Wall clock time and date at job start Tue Mar 31 2020 06:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 120.00465 * 2 1 4 4 C 1.53000 * 109.47527 * 119.99393 * 3 2 1 5 5 O 1.42905 * 109.46790 * 359.97438 * 3 2 1 6 6 C 1.50696 * 109.47075 * 239.99932 * 3 2 1 7 7 O 1.21282 * 119.99986 * 334.98974 * 6 3 2 8 8 N 1.34779 * 119.99974 * 154.99988 * 6 3 2 9 9 C 1.46499 * 119.99791 * 179.97438 * 8 6 3 10 10 C 1.50707 * 109.46958 * 179.97438 * 9 8 6 11 11 C 1.38321 * 119.96235 * 269.72501 * 10 9 8 12 12 C 1.38280 * 120.13700 * 179.76757 * 11 10 9 13 13 C 1.38127 * 120.06774 * 0.50859 * 12 11 10 14 14 C 1.38853 * 119.92806 * 359.74640 * 13 12 11 15 15 O 1.35757 * 120.06919 * 179.97438 * 14 13 12 16 16 C 1.34827 * 116.99849 * 354.48487 * 15 14 13 17 17 H 1.08006 * 120.00052 * 5.06617 * 16 15 14 18 18 C 1.38652 * 120.00267 * 185.05922 * 16 15 14 19 19 N 1.31556 * 119.99911 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00268 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47483 * 89.99813 * 20 18 16 22 22 H 1.48498 * 109.46765 * 210.00050 * 20 18 16 23 23 H 1.48501 * 109.46757 * 329.99451 * 20 18 16 24 24 C 1.38079 * 119.96612 * 90.00278 * 10 9 8 25 25 H 1.07994 * 119.99722 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.00161 * 179.97438 * 1 2 3 27 27 H 1.08008 * 119.99724 * 179.97438 * 2 1 3 28 28 H 1.08993 * 109.47060 * 180.02562 * 4 3 2 29 29 H 1.08999 * 109.46927 * 300.00042 * 4 3 2 30 30 H 1.08999 * 109.47020 * 60.00378 * 4 3 2 31 31 H 0.96698 * 113.99876 * 299.99985 * 5 3 2 32 32 H 0.96996 * 120.00278 * 359.97438 * 8 6 3 33 33 H 1.09000 * 109.47295 * 59.99759 * 9 8 6 34 34 H 1.09001 * 109.47659 * 299.99946 * 9 8 6 35 35 H 1.08002 * 119.93628 * 359.97438 * 11 10 9 36 36 H 1.07998 * 119.96810 * 180.25311 * 12 11 10 37 37 H 1.08000 * 120.03454 * 179.72133 * 13 12 11 38 38 H 0.97001 * 120.00363 * 179.97438 * 19 18 16 39 39 H 1.07995 * 120.03338 * 359.95102 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9431 1.3861 1.2493 5 8 1.1350 2.3912 -0.0006 6 6 2.9300 1.3847 -1.2304 7 8 3.3003 0.3680 -1.7783 8 7 3.2935 2.5859 -1.7219 9 6 4.1363 2.6634 -2.9178 10 6 4.3954 4.1087 -3.2569 11 6 3.5374 4.7835 -4.1065 12 6 3.7691 6.1111 -4.4163 13 6 4.8645 6.7645 -3.8862 14 6 5.7305 6.0883 -3.0372 15 8 6.8082 6.7276 -2.5149 16 6 7.0454 7.9819 -2.9487 17 1 6.3465 8.4635 -3.6167 18 6 8.1864 8.6537 -2.5372 19 7 9.0378 8.0670 -1.7239 20 14 8.5146 10.3919 -3.1377 21 1 7.9034 11.3645 -2.1967 22 1 9.9798 10.6233 -3.2063 23 1 7.9217 10.5694 -4.4875 24 6 5.4922 4.7563 -2.7237 25 1 -0.5399 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 3.4878 2.3302 1.2494 29 1 2.3164 1.3285 2.1392 30 1 3.6514 0.5577 1.2494 31 1 0.5440 2.4030 -0.7659 32 1 2.9972 3.3990 -1.2839 33 1 3.6281 2.1802 -3.7523 34 1 5.0837 2.1588 -2.7280 35 1 2.6830 4.2734 -4.5262 36 1 3.0952 6.6365 -5.0768 37 1 5.0474 7.8001 -4.1321 38 1 9.8362 8.5368 -1.4363 39 1 6.1637 4.2278 -2.0634 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328322787.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:48 Heat of formation + Delta-G solvation = -68.457083 kcal Electronic energy + Delta-G solvation = -22339.219989 eV Core-core repulsion = 18827.262412 eV Total energy + Delta-G solvation = -3511.957577 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.42414 -39.15343 -37.59877 -36.78383 -34.64837 -33.09791 -32.35692 -31.16390 -30.37678 -29.15083 -26.29174 -25.27903 -24.15695 -21.76109 -21.19531 -20.79848 -19.82610 -18.56913 -17.63287 -17.15611 -16.75529 -16.00938 -15.55231 -15.15459 -14.87427 -14.52589 -14.31436 -14.24920 -13.65557 -13.54882 -13.25703 -12.83607 -12.67793 -12.53022 -12.43185 -12.40516 -12.13382 -11.79666 -11.69836 -11.40472 -11.06887 -10.95410 -10.85921 -10.73483 -10.49547 -10.02521 -9.51066 -9.42687 -9.06063 -8.91074 -8.26771 -7.35695 -6.51030 -4.10654 1.79245 1.95622 2.24047 2.46740 3.08261 3.09942 3.14811 3.28238 3.78475 3.90965 4.38648 4.43986 4.66832 4.82024 4.90325 5.04541 5.05127 5.23050 5.41319 5.46082 5.50605 5.65202 5.69162 5.80111 5.84987 5.86479 6.04707 6.22056 6.26201 6.33396 6.40247 6.52344 6.78544 6.96626 7.06752 7.14972 7.24445 7.33029 7.52079 7.68429 7.92964 8.12549 8.94271 9.62521 10.66694 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.026692 B = 0.003040 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.771047 B = 9206.985773 C = 9599.822094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.165 4.165 3 C 0.147 3.853 4 C -0.134 4.134 5 O -0.545 6.545 6 C 0.490 3.510 7 O -0.538 6.538 8 N -0.710 5.710 9 C 0.166 3.834 10 C -0.074 4.074 11 C -0.195 4.195 12 C -0.076 4.076 13 C -0.225 4.225 14 C 0.151 3.849 15 O -0.176 6.176 16 C -0.394 4.394 17 H 0.092 0.908 18 C 0.040 3.960 19 N -0.861 5.861 20 Si 0.941 3.059 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.171 4.171 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.125 0.875 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.382 0.618 32 H 0.409 0.591 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.128 0.872 38 H 0.271 0.729 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.530 -10.042 1.812 17.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.184 4.184 3 C 0.103 3.897 4 C -0.191 4.191 5 O -0.352 6.352 6 C 0.274 3.726 7 O -0.415 6.415 8 N -0.362 5.362 9 C 0.043 3.957 10 C -0.074 4.074 11 C -0.215 4.215 12 C -0.094 4.094 13 C -0.245 4.245 14 C 0.097 3.903 15 O -0.079 6.079 16 C -0.470 4.470 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.495 5.495 20 Si 0.766 3.234 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.192 1.192 24 C -0.190 4.190 25 H 0.123 0.877 26 H 0.122 0.878 27 H 0.143 0.857 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.230 0.770 32 H 0.245 0.755 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.146 0.854 38 H 0.081 0.919 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.532 -10.632 2.247 17.355 hybrid contribution -0.226 1.199 -0.744 1.429 sum -13.758 -9.433 1.503 16.749 Atomic orbital electron populations 1.23845 0.95748 1.02556 0.99665 1.23231 0.96327 0.98002 1.00825 1.20395 0.88621 0.86136 0.94509 1.21704 0.98801 1.03815 0.94796 1.86616 1.50388 1.48333 1.49819 1.21233 0.81705 0.83811 0.85803 1.90704 1.55942 1.34781 1.60098 1.46162 1.51680 1.08653 1.29658 1.20200 0.94927 0.93633 0.86937 1.19242 0.95653 0.93834 0.98700 1.20461 1.01410 0.95275 1.04315 1.20744 0.96337 0.94224 0.98075 1.21247 0.97712 1.01503 1.04019 1.19314 0.88232 0.91422 0.91339 1.83982 1.38407 1.28372 1.57148 1.21326 1.07832 0.87841 1.29971 0.89023 1.25299 0.94645 1.00133 0.96374 1.70034 1.11120 1.37570 1.30803 0.85705 0.78177 0.80359 0.79160 1.19827 1.20201 1.19172 1.20080 1.00097 0.92862 1.06004 0.87746 0.87760 0.85733 0.90726 0.90465 0.90207 0.76975 0.75503 0.90913 0.90760 0.87552 0.87257 0.85430 0.91922 0.86407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.45 13.93 29.01 0.40 -1.05 16 2 C -0.17 -1.61 8.15 -36.03 -0.29 -1.91 16 3 C 0.15 1.55 1.29 -92.93 -0.12 1.43 16 4 C -0.13 -1.31 8.81 37.16 0.33 -0.98 16 5 O -0.55 -5.17 11.26 -35.23 -0.40 -5.57 16 6 C 0.49 6.48 6.68 -10.99 -0.07 6.41 16 7 O -0.54 -8.83 16.26 5.56 0.09 -8.74 16 8 N -0.71 -9.23 5.46 -61.47 -0.34 -9.57 16 9 C 0.17 2.40 5.80 -5.19 -0.03 2.37 16 10 C -0.07 -1.23 5.25 -104.65 -0.55 -1.78 16 11 C -0.20 -3.14 9.70 -39.54 -0.38 -3.52 16 12 C -0.08 -1.30 10.04 -39.61 -0.40 -1.70 16 13 C -0.23 -4.67 9.17 -39.39 -0.36 -5.03 16 14 C 0.15 3.50 6.65 -39.11 -0.26 3.24 16 15 O -0.18 -4.88 9.76 0.04 0.00 -4.88 16 16 C -0.39 -10.73 9.49 30.89 0.29 -10.44 16 17 H 0.09 2.30 5.20 -52.48 -0.27 2.03 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -24.84 13.67 55.48 0.76 -24.08 16 20 Si 0.94 20.09 29.55 -169.99 -5.02 15.07 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 23 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 24 C -0.17 -3.43 9.65 -39.40 -0.38 -3.81 16 25 H 0.10 0.73 6.41 -52.49 -0.34 0.40 16 26 H 0.10 0.70 8.06 -52.49 -0.42 0.27 16 27 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.38 2.59 8.05 45.56 0.37 2.96 16 32 H 0.41 5.04 7.90 -40.82 -0.32 4.71 16 33 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 34 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 35 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 38 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 339.75 15.07 5.12 5.12 Total: -1.00 -31.56 339.75 -5.92 -37.49 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -4.22 Total: 10.93 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -1.92 Total: -15.77 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.42 Total: -33.64 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.31 Total: -19.19 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.56 -5.92 -37.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328322787.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.971 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds