Wall clock time and date at job start Tue Mar 31 2020 06:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 120.00465 * 2 1 4 4 C 1.53000 * 109.47527 * 119.99393 * 3 2 1 5 5 O 1.42905 * 109.46790 * 359.97438 * 3 2 1 6 6 C 1.50696 * 109.47075 * 239.99932 * 3 2 1 7 7 O 1.21282 * 119.99986 * 334.98974 * 6 3 2 8 8 N 1.34779 * 119.99974 * 154.99988 * 6 3 2 9 9 C 1.46499 * 119.99791 * 179.97438 * 8 6 3 10 10 C 1.50707 * 109.46958 * 179.97438 * 9 8 6 11 11 C 1.38321 * 119.96235 * 269.72501 * 10 9 8 12 12 C 1.38280 * 120.13700 * 179.76757 * 11 10 9 13 13 C 1.38127 * 120.06774 * 0.50859 * 12 11 10 14 14 C 1.38853 * 119.92806 * 359.74640 * 13 12 11 15 15 O 1.35757 * 120.06919 * 179.97438 * 14 13 12 16 16 C 1.34827 * 116.99849 * 354.48487 * 15 14 13 17 17 H 1.08006 * 120.00052 * 5.06617 * 16 15 14 18 18 C 1.38652 * 120.00267 * 185.05922 * 16 15 14 19 19 N 1.31556 * 119.99911 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00268 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47483 * 89.99813 * 20 18 16 22 22 H 1.48498 * 109.46765 * 210.00050 * 20 18 16 23 23 H 1.48501 * 109.46757 * 329.99451 * 20 18 16 24 24 C 1.38079 * 119.96612 * 90.00278 * 10 9 8 25 25 H 1.07994 * 119.99722 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.00161 * 179.97438 * 1 2 3 27 27 H 1.08008 * 119.99724 * 179.97438 * 2 1 3 28 28 H 1.08993 * 109.47060 * 180.02562 * 4 3 2 29 29 H 1.08999 * 109.46927 * 300.00042 * 4 3 2 30 30 H 1.08999 * 109.47020 * 60.00378 * 4 3 2 31 31 H 0.96698 * 113.99876 * 299.99985 * 5 3 2 32 32 H 0.96996 * 120.00278 * 359.97438 * 8 6 3 33 33 H 1.09000 * 109.47295 * 59.99759 * 9 8 6 34 34 H 1.09001 * 109.47659 * 299.99946 * 9 8 6 35 35 H 1.08002 * 119.93628 * 359.97438 * 11 10 9 36 36 H 1.07998 * 119.96810 * 180.25311 * 12 11 10 37 37 H 1.08000 * 120.03454 * 179.72133 * 13 12 11 38 38 H 0.97001 * 120.00363 * 179.97438 * 19 18 16 39 39 H 1.07995 * 120.03338 * 359.95102 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9431 1.3861 1.2493 5 8 1.1350 2.3912 -0.0006 6 6 2.9300 1.3847 -1.2304 7 8 3.3003 0.3680 -1.7783 8 7 3.2935 2.5859 -1.7219 9 6 4.1363 2.6634 -2.9178 10 6 4.3954 4.1087 -3.2569 11 6 3.5374 4.7835 -4.1065 12 6 3.7691 6.1111 -4.4163 13 6 4.8645 6.7645 -3.8862 14 6 5.7305 6.0883 -3.0372 15 8 6.8082 6.7276 -2.5149 16 6 7.0454 7.9819 -2.9487 17 1 6.3465 8.4635 -3.6167 18 6 8.1864 8.6537 -2.5372 19 7 9.0378 8.0670 -1.7239 20 14 8.5146 10.3919 -3.1377 21 1 7.9034 11.3645 -2.1967 22 1 9.9798 10.6233 -3.2063 23 1 7.9217 10.5694 -4.4875 24 6 5.4922 4.7563 -2.7237 25 1 -0.5399 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 3.4878 2.3302 1.2494 29 1 2.3164 1.3285 2.1392 30 1 3.6514 0.5577 1.2494 31 1 0.5440 2.4030 -0.7659 32 1 2.9972 3.3990 -1.2839 33 1 3.6281 2.1802 -3.7523 34 1 5.0837 2.1588 -2.7280 35 1 2.6830 4.2734 -4.5262 36 1 3.0952 6.6365 -5.0768 37 1 5.0474 7.8001 -4.1321 38 1 9.8362 8.5368 -1.4363 39 1 6.1637 4.2278 -2.0634 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328322787.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:47 Heat of formation + Delta-G solvation = -91.649086 kcal Electronic energy + Delta-G solvation = -22340.225670 eV Core-core repulsion = 18827.262412 eV Total energy + Delta-G solvation = -3512.963258 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.46237 -40.76357 -38.73028 -38.20722 -35.88806 -34.29562 -33.84121 -32.38520 -31.36890 -30.72521 -27.72603 -27.02764 -25.11051 -23.28419 -22.55513 -21.97155 -20.63846 -19.83775 -19.20498 -18.64092 -17.70144 -17.11298 -16.82702 -16.61777 -16.27293 -16.08705 -15.62082 -15.43274 -15.28244 -14.87613 -14.37729 -14.04160 -13.98278 -13.70923 -13.57860 -13.36772 -13.22956 -13.18829 -13.02837 -12.55978 -12.48420 -12.40198 -12.28778 -12.12073 -11.85111 -11.22644 -10.88284 -10.80621 -10.37730 -10.20110 -9.75251 -9.04472 -8.47604 -6.16314 0.36002 0.69431 1.18780 1.35578 1.42313 1.44674 1.52937 2.16949 2.21194 2.84150 3.04714 3.14553 3.38232 3.61696 3.68696 3.83173 4.02600 4.08327 4.28666 4.38027 4.39519 4.51135 4.61775 4.67727 4.71158 4.73102 4.99971 5.01709 5.09018 5.10918 5.23875 5.28327 5.60483 5.61434 5.66697 5.69013 5.70325 6.00886 6.15115 6.30640 6.59658 6.97183 7.07507 7.77225 8.75548 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.026692 B = 0.003040 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.771047 B = 9206.985773 C = 9599.822094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.190 4.190 3 C 0.158 3.842 4 C -0.136 4.136 5 O -0.546 6.546 6 C 0.491 3.509 7 O -0.571 6.571 8 N -0.705 5.705 9 C 0.171 3.829 10 C -0.060 4.060 11 C -0.168 4.168 12 C -0.069 4.069 13 C -0.234 4.234 14 C 0.113 3.887 15 O -0.232 6.232 16 C -0.413 4.413 17 H 0.104 0.896 18 C -0.023 4.023 19 N -0.921 5.921 20 Si 1.018 2.982 21 H -0.263 1.263 22 H -0.273 1.273 23 H -0.252 1.252 24 C -0.183 4.183 25 H 0.117 0.883 26 H 0.119 0.881 27 H 0.116 0.884 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.394 0.606 32 H 0.414 0.586 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.121 0.879 38 H 0.272 0.728 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.950 -10.195 0.481 20.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.209 4.209 3 C 0.113 3.887 4 C -0.194 4.194 5 O -0.355 6.355 6 C 0.277 3.723 7 O -0.450 6.450 8 N -0.357 5.357 9 C 0.048 3.952 10 C -0.060 4.060 11 C -0.186 4.186 12 C -0.087 4.087 13 C -0.254 4.254 14 C 0.062 3.938 15 O -0.139 6.139 16 C -0.489 4.489 17 H 0.121 0.879 18 C -0.221 4.221 19 N -0.559 5.559 20 Si 0.837 3.163 21 H -0.188 1.188 22 H -0.198 1.198 23 H -0.175 1.175 24 C -0.203 4.203 25 H 0.135 0.865 26 H 0.137 0.863 27 H 0.134 0.866 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.245 0.755 32 H 0.251 0.749 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.167 0.833 36 H 0.168 0.832 37 H 0.139 0.861 38 H 0.081 0.919 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.023 -10.802 0.898 20.181 hybrid contribution 0.523 0.986 -0.410 1.189 sum -16.500 -9.816 0.488 19.205 Atomic orbital electron populations 1.24093 0.95092 1.03895 0.96688 1.23158 0.96989 0.97198 1.03569 1.20243 0.88494 0.86988 0.92932 1.21745 0.99020 1.03366 0.95238 1.86611 1.50323 1.47908 1.50628 1.21787 0.81350 0.83022 0.86142 1.90688 1.57290 1.35814 1.61239 1.46078 1.51264 1.09071 1.29238 1.20096 0.95133 0.91811 0.88166 1.19438 0.94193 0.94731 0.97686 1.20998 1.01275 0.94710 1.01664 1.21175 0.95269 0.94738 0.97486 1.21388 0.98605 1.01475 1.03922 1.19848 0.88249 0.92669 0.92993 1.83949 1.41073 1.29111 1.59790 1.21829 1.08483 0.88282 1.30293 0.87879 1.26589 0.94131 1.04908 0.96434 1.70185 1.12252 1.39956 1.33554 0.84590 0.78114 0.74296 0.79254 1.18763 1.19806 1.17529 1.20222 1.01383 0.92141 1.06513 0.86474 0.86287 0.86572 0.91533 0.89125 0.90253 0.75495 0.74924 0.89225 0.91886 0.83252 0.83224 0.86122 0.91865 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 13.93 67.78 0.94 -1.16 16 2 C -0.19 -3.37 8.15 25.64 0.21 -3.16 16 3 C 0.16 3.05 1.29 -12.29 -0.02 3.04 16 4 C -0.14 -2.54 8.81 71.98 0.63 -1.91 16 5 O -0.55 -8.93 11.26 -148.98 -1.68 -10.61 16 6 C 0.49 12.28 6.68 87.66 0.59 12.87 16 7 O -0.57 -18.19 16.26 -3.03 -0.05 -18.24 16 8 N -0.70 -17.04 5.46 -466.78 -2.55 -19.58 16 9 C 0.17 4.62 5.80 85.64 0.50 5.11 16 10 C -0.06 -1.88 5.25 -19.88 -0.10 -1.99 16 11 C -0.17 -4.65 9.70 22.30 0.22 -4.44 16 12 C -0.07 -2.12 10.04 22.25 0.22 -1.90 16 13 C -0.23 -9.59 9.17 22.39 0.21 -9.39 16 14 C 0.11 5.40 6.65 22.58 0.15 5.55 16 15 O -0.23 -13.74 9.76 -22.78 -0.22 -13.96 16 16 C -0.41 -23.57 9.49 67.92 0.64 -22.93 16 17 H 0.10 5.35 5.20 -2.91 -0.02 5.33 16 18 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16 19 N -0.92 -56.23 13.67 21.61 0.30 -55.93 16 20 Si 1.02 42.17 29.55 68.60 2.03 44.20 16 21 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 23 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 24 C -0.18 -7.49 9.65 22.39 0.22 -7.27 16 25 H 0.12 1.22 6.41 -2.91 -0.02 1.20 16 26 H 0.12 1.20 8.06 -2.91 -0.02 1.18 16 27 H 0.12 2.23 8.06 -2.91 -0.02 2.21 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.39 4.04 8.05 -74.06 -0.60 3.44 16 32 H 0.41 9.35 7.90 -92.71 -0.73 8.62 16 33 H 0.09 2.19 8.08 -2.39 -0.02 2.17 16 34 H 0.06 1.88 8.08 -2.39 -0.02 1.86 16 35 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 36 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 37 H 0.12 5.03 5.64 -2.91 -0.02 5.02 16 38 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 39 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -73.18 339.75 2.45 -70.73 By element: Atomic # 1 Polarization: 32.04 SS G_CDS: -0.24 Total: 31.80 kcal Atomic # 6 Polarization: -33.26 SS G_CDS: 4.87 Total: -28.39 kcal Atomic # 7 Polarization: -73.26 SS G_CDS: -2.25 Total: -75.52 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -1.95 Total: -42.81 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -73.18 2.45 -70.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328322787.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.921 kcal (2) G-P(sol) polarization free energy of solvation -73.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds