Wall clock time and date at job start Tue Mar 31 2020 06:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50707 * 119.99744 * 2 1 4 4 C 1.53002 * 109.46979 * 239.99583 * 3 2 1 5 5 O 1.42899 * 109.46968 * 359.97438 * 3 2 1 6 6 C 1.50707 * 109.46836 * 120.00147 * 3 2 1 7 7 O 1.21273 * 120.00204 * 24.99349 * 6 3 2 8 8 N 1.34774 * 119.99327 * 204.99910 * 6 3 2 9 9 C 1.46508 * 119.99681 * 179.97438 * 8 6 3 10 10 C 1.50699 * 109.47169 * 180.02562 * 9 8 6 11 11 C 1.38328 * 119.96224 * 270.02412 * 10 9 8 12 12 C 1.38281 * 120.13505 * 179.97438 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47010 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46908 * 119.99967 * 20 18 16 23 23 H 1.48504 * 109.47373 * 240.00300 * 20 18 16 24 24 C 1.38073 * 119.96539 * 89.99807 * 10 9 8 25 25 H 1.08003 * 120.00245 * 0.02562 * 1 2 3 26 26 H 1.08006 * 120.00100 * 180.02562 * 1 2 3 27 27 H 1.08003 * 120.00245 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46937 * 300.00361 * 4 3 2 29 29 H 1.08997 * 109.46767 * 60.00044 * 4 3 2 30 30 H 1.08995 * 109.47087 * 180.02562 * 4 3 2 31 31 H 0.96693 * 113.99756 * 60.00653 * 5 3 2 32 32 H 0.96993 * 120.00552 * 0.02562 * 8 6 3 33 33 H 1.09004 * 109.46757 * 59.99773 * 9 8 6 34 34 H 1.08998 * 109.46890 * 300.00426 * 9 8 6 35 35 H 1.08001 * 119.93314 * 359.97438 * 11 10 9 36 36 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 37 37 H 1.08006 * 120.03715 * 180.31908 * 13 12 11 38 38 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 39 39 H 1.07996 * 120.03547 * 0.04988 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.9431 1.3862 -1.2492 5 8 1.1348 2.3913 -0.0006 6 6 2.9299 1.3850 1.2305 7 8 3.3000 0.3684 1.7785 8 7 3.2932 2.5862 1.7219 9 6 4.1350 2.6638 2.9185 10 6 4.3942 4.1092 3.2574 11 6 5.4932 4.7577 2.7235 12 6 5.7341 6.0840 3.0317 13 6 4.8738 6.7672 3.8689 14 6 3.7729 6.1174 4.4110 15 8 2.9289 6.7845 5.2389 16 6 3.2803 8.0377 5.5910 17 1 4.1545 8.4965 5.1533 18 6 2.5193 8.7372 6.5152 19 7 1.4548 8.1781 7.0488 20 14 3.0066 10.4732 7.0036 21 1 4.2335 10.8689 6.2664 22 1 1.9042 11.4097 6.6678 23 1 3.2693 10.5212 8.4644 24 6 3.5341 4.7848 4.1001 25 1 -0.5401 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 3.6514 0.5577 -1.2491 29 1 2.3165 1.3284 -2.1392 30 1 3.4884 2.3299 -1.2490 31 1 0.5433 2.4033 0.7642 32 1 2.9968 3.3992 1.2839 33 1 5.0825 2.1590 2.7295 34 1 3.6261 2.1809 3.7527 35 1 6.1645 4.2270 2.0646 36 1 6.5932 6.5874 2.6137 37 1 5.0596 7.8046 4.1052 38 1 0.9227 8.6674 7.6955 39 1 2.6764 4.2778 4.5169 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328322792.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:50 Heat of formation + Delta-G solvation = -68.626038 kcal Electronic energy + Delta-G solvation = -22355.153384 eV Core-core repulsion = 18843.188480 eV Total energy + Delta-G solvation = -3511.964903 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.41537 -39.15406 -37.58239 -36.78304 -34.64519 -33.06898 -32.35968 -31.16837 -30.37840 -29.15417 -26.29315 -25.28592 -24.15834 -21.76554 -21.18225 -20.79822 -19.80163 -18.55781 -17.63078 -17.13021 -16.76998 -15.98675 -15.55491 -15.17672 -14.78420 -14.62567 -14.35466 -14.16343 -13.64099 -13.59893 -13.18118 -12.88898 -12.70875 -12.51302 -12.44631 -12.43109 -12.13623 -11.76705 -11.70042 -11.40895 -11.05182 -10.97376 -10.84768 -10.72914 -10.48089 -10.00620 -9.49698 -9.42698 -9.05843 -8.91701 -8.26938 -7.35804 -6.51523 -4.11017 1.80264 1.97219 2.24073 2.47575 3.07578 3.09890 3.15411 3.28537 3.80503 3.90621 4.39498 4.43989 4.67138 4.81409 4.90224 5.04250 5.07411 5.23269 5.38167 5.41960 5.50390 5.66735 5.69450 5.78545 5.80752 5.86274 6.04685 6.21774 6.29153 6.36161 6.40655 6.52213 6.78345 6.96821 7.09991 7.14927 7.24580 7.32814 7.52671 7.68321 7.92671 8.12933 8.94004 9.62237 10.66277 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.023468 B = 0.003152 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.834106 B = 8882.426993 C = 9479.207907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.168 4.168 3 C 0.147 3.853 4 C -0.132 4.132 5 O -0.546 6.546 6 C 0.490 3.510 7 O -0.538 6.538 8 N -0.710 5.710 9 C 0.165 3.835 10 C -0.074 4.074 11 C -0.195 4.195 12 C -0.075 4.075 13 C -0.225 4.225 14 C 0.151 3.849 15 O -0.176 6.176 16 C -0.393 4.393 17 H 0.093 0.907 18 C 0.040 3.960 19 N -0.860 5.860 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.171 4.171 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.124 0.876 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.384 0.616 32 H 0.409 0.591 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.128 0.872 38 H 0.270 0.730 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.828 -10.289 -13.345 16.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.187 4.187 3 C 0.103 3.897 4 C -0.189 4.189 5 O -0.353 6.353 6 C 0.274 3.726 7 O -0.415 6.415 8 N -0.362 5.362 9 C 0.043 3.957 10 C -0.074 4.074 11 C -0.214 4.214 12 C -0.094 4.094 13 C -0.245 4.245 14 C 0.097 3.903 15 O -0.080 6.080 16 C -0.469 4.469 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.495 5.495 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.191 4.191 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.142 0.858 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.234 0.766 32 H 0.245 0.755 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.146 0.854 38 H 0.080 0.920 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.001 -10.865 -13.207 17.218 hybrid contribution -0.107 1.194 0.676 1.376 sum 1.894 -9.671 -12.531 15.942 Atomic orbital electron populations 1.23871 0.95773 1.02654 0.99266 1.23211 0.96337 0.97924 1.01189 1.20381 0.88679 0.86270 0.94363 1.21684 0.98779 1.03502 0.94957 1.86593 1.50384 1.48246 1.50063 1.21244 0.81642 0.83801 0.85879 1.90701 1.55903 1.34797 1.60127 1.46165 1.51771 1.08658 1.29575 1.20200 0.94779 0.93618 0.87102 1.19242 0.95961 0.93801 0.98415 1.20475 0.99780 0.95460 1.05720 1.20745 0.97875 0.94104 0.96650 1.21249 0.98028 1.01429 1.03761 1.19313 0.89289 0.91270 0.90422 1.83980 1.41296 1.27759 1.54930 1.21377 1.13011 0.87789 1.24761 0.88969 1.25299 0.95494 1.00128 0.95542 1.70041 1.14873 1.37527 1.27070 0.85641 0.78742 0.80245 0.78766 1.19077 1.20093 1.20088 1.20072 1.02146 0.92670 1.04179 0.87661 0.87728 0.85779 0.90326 0.90484 0.90951 0.76642 0.75508 0.90863 0.90814 0.87517 0.87246 0.85426 0.91982 0.86434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 13.93 29.02 0.40 -1.13 16 2 C -0.17 -1.68 8.15 -36.02 -0.29 -1.98 16 3 C 0.15 1.55 1.29 -92.92 -0.12 1.43 16 4 C -0.13 -1.19 8.81 37.16 0.33 -0.86 16 5 O -0.55 -5.47 11.26 -35.23 -0.40 -5.87 16 6 C 0.49 6.49 6.69 -10.98 -0.07 6.41 16 7 O -0.54 -8.84 16.26 5.56 0.09 -8.75 16 8 N -0.71 -9.24 5.46 -61.47 -0.34 -9.57 16 9 C 0.17 2.40 5.80 -5.19 -0.03 2.37 16 10 C -0.07 -1.23 5.25 -104.65 -0.55 -1.78 16 11 C -0.19 -3.15 9.70 -39.53 -0.38 -3.54 16 12 C -0.08 -1.31 10.04 -39.61 -0.40 -1.70 16 13 C -0.23 -4.67 9.17 -39.40 -0.36 -5.03 16 14 C 0.15 3.49 6.65 -39.11 -0.26 3.23 16 15 O -0.18 -4.88 9.76 0.05 0.00 -4.88 16 16 C -0.39 -10.70 9.49 30.89 0.29 -10.41 16 17 H 0.09 2.32 5.21 -52.49 -0.27 2.04 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -24.74 13.67 55.48 0.76 -23.98 16 20 Si 0.94 20.07 29.55 -169.99 -5.02 15.04 16 21 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 24 C -0.17 -3.41 9.65 -39.39 -0.38 -3.79 16 25 H 0.11 0.83 6.41 -52.48 -0.34 0.49 16 26 H 0.10 0.76 8.06 -52.48 -0.42 0.34 16 27 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.38 3.07 8.04 45.56 0.37 3.44 16 32 H 0.41 5.04 7.90 -40.82 -0.32 4.72 16 33 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 34 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 35 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 36 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.13 2.66 5.64 -52.48 -0.30 2.36 16 38 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 339.76 15.07 5.12 5.12 Total: -1.00 -31.46 339.76 -5.92 -37.39 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -4.22 Total: 11.30 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -1.92 Total: -15.79 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.42 Total: -33.56 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.31 Total: -19.50 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.46 -5.92 -37.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328322792.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.240 kcal (2) G-P(sol) polarization free energy of solvation -31.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds