Wall clock time and date at job start Tue Mar 31 2020 06:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50707 * 119.99744 * 2 1 4 4 C 1.53002 * 109.46979 * 239.99583 * 3 2 1 5 5 O 1.42899 * 109.46968 * 359.97438 * 3 2 1 6 6 C 1.50707 * 109.46836 * 120.00147 * 3 2 1 7 7 O 1.21273 * 120.00204 * 24.99349 * 6 3 2 8 8 N 1.34774 * 119.99327 * 204.99910 * 6 3 2 9 9 C 1.46508 * 119.99681 * 179.97438 * 8 6 3 10 10 C 1.50699 * 109.47169 * 180.02562 * 9 8 6 11 11 C 1.38328 * 119.96224 * 270.02412 * 10 9 8 12 12 C 1.38281 * 120.13505 * 179.97438 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47010 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46908 * 119.99967 * 20 18 16 23 23 H 1.48504 * 109.47373 * 240.00300 * 20 18 16 24 24 C 1.38073 * 119.96539 * 89.99807 * 10 9 8 25 25 H 1.08003 * 120.00245 * 0.02562 * 1 2 3 26 26 H 1.08006 * 120.00100 * 180.02562 * 1 2 3 27 27 H 1.08003 * 120.00245 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46937 * 300.00361 * 4 3 2 29 29 H 1.08997 * 109.46767 * 60.00044 * 4 3 2 30 30 H 1.08995 * 109.47087 * 180.02562 * 4 3 2 31 31 H 0.96693 * 113.99756 * 60.00653 * 5 3 2 32 32 H 0.96993 * 120.00552 * 0.02562 * 8 6 3 33 33 H 1.09004 * 109.46757 * 59.99773 * 9 8 6 34 34 H 1.08998 * 109.46890 * 300.00426 * 9 8 6 35 35 H 1.08001 * 119.93314 * 359.97438 * 11 10 9 36 36 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 37 37 H 1.08006 * 120.03715 * 180.31908 * 13 12 11 38 38 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 39 39 H 1.07996 * 120.03547 * 0.04988 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.9431 1.3862 -1.2492 5 8 1.1348 2.3913 -0.0006 6 6 2.9299 1.3850 1.2305 7 8 3.3000 0.3684 1.7785 8 7 3.2932 2.5862 1.7219 9 6 4.1350 2.6638 2.9185 10 6 4.3942 4.1092 3.2574 11 6 5.4932 4.7577 2.7235 12 6 5.7341 6.0840 3.0317 13 6 4.8738 6.7672 3.8689 14 6 3.7729 6.1174 4.4110 15 8 2.9289 6.7845 5.2389 16 6 3.2803 8.0377 5.5910 17 1 4.1545 8.4965 5.1533 18 6 2.5193 8.7372 6.5152 19 7 1.4548 8.1781 7.0488 20 14 3.0066 10.4732 7.0036 21 1 4.2335 10.8689 6.2664 22 1 1.9042 11.4097 6.6678 23 1 3.2693 10.5212 8.4644 24 6 3.5341 4.7848 4.1001 25 1 -0.5401 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 3.6514 0.5577 -1.2491 29 1 2.3165 1.3284 -2.1392 30 1 3.4884 2.3299 -1.2490 31 1 0.5433 2.4033 0.7642 32 1 2.9968 3.3992 1.2839 33 1 5.0825 2.1590 2.7295 34 1 3.6261 2.1809 3.7527 35 1 6.1645 4.2270 2.0646 36 1 6.5932 6.5874 2.6137 37 1 5.0596 7.8046 4.1052 38 1 0.9227 8.6674 7.6955 39 1 2.6764 4.2778 4.5169 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328322792.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:49 Heat of formation + Delta-G solvation = -91.589216 kcal Electronic energy + Delta-G solvation = -22356.149142 eV Core-core repulsion = 18843.188480 eV Total energy + Delta-G solvation = -3512.960662 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.45931 -40.76251 -38.72963 -38.20722 -35.88695 -34.29416 -33.84569 -32.38762 -31.35220 -30.72674 -27.72133 -27.02475 -25.09595 -23.28813 -22.55360 -21.97508 -20.63758 -19.83546 -19.20275 -18.64079 -17.72004 -17.09273 -16.84422 -16.64258 -16.16144 -16.11707 -15.69638 -15.49322 -15.16931 -14.89725 -14.37403 -14.07323 -13.94481 -13.73893 -13.55271 -13.34493 -13.21139 -13.16903 -13.03903 -12.58562 -12.50436 -12.38363 -12.29102 -12.08949 -11.85143 -11.22489 -10.88847 -10.81276 -10.38891 -10.19503 -9.75312 -9.04413 -8.47600 -6.16095 0.36008 0.69222 1.16838 1.35942 1.43453 1.44231 1.53860 2.16872 2.20666 2.84160 3.04634 3.14590 3.38096 3.61377 3.69397 3.83025 4.04464 4.08317 4.28862 4.37067 4.38745 4.51086 4.62266 4.71297 4.71510 4.76002 4.99486 5.00202 5.11364 5.12189 5.24069 5.28482 5.59088 5.60819 5.65023 5.69004 5.70333 6.01116 6.14798 6.28104 6.56345 6.97392 7.07702 7.77206 8.75635 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.023468 B = 0.003152 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.834106 B = 8882.426993 C = 9479.207907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.189 4.189 3 C 0.154 3.846 4 C -0.132 4.132 5 O -0.549 6.549 6 C 0.491 3.509 7 O -0.571 6.571 8 N -0.705 5.705 9 C 0.171 3.829 10 C -0.060 4.060 11 C -0.169 4.169 12 C -0.069 4.069 13 C -0.234 4.234 14 C 0.113 3.887 15 O -0.232 6.232 16 C -0.412 4.412 17 H 0.104 0.896 18 C -0.023 4.023 19 N -0.920 5.920 20 Si 1.018 2.982 21 H -0.250 1.250 22 H -0.269 1.269 23 H -0.270 1.270 24 C -0.181 4.181 25 H 0.113 0.887 26 H 0.118 0.882 27 H 0.120 0.880 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.392 0.608 32 H 0.414 0.586 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.121 0.879 38 H 0.272 0.728 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.664 -10.537 -15.609 19.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.208 4.208 3 C 0.110 3.890 4 C -0.189 4.189 5 O -0.357 6.357 6 C 0.277 3.723 7 O -0.450 6.450 8 N -0.356 5.356 9 C 0.048 3.952 10 C -0.060 4.060 11 C -0.188 4.188 12 C -0.087 4.087 13 C -0.254 4.254 14 C 0.063 3.937 15 O -0.139 6.139 16 C -0.489 4.489 17 H 0.121 0.879 18 C -0.220 4.220 19 N -0.558 5.558 20 Si 0.837 3.163 21 H -0.173 1.173 22 H -0.194 1.194 23 H -0.195 1.195 24 C -0.201 4.201 25 H 0.131 0.869 26 H 0.137 0.863 27 H 0.138 0.862 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.242 0.758 32 H 0.251 0.749 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.166 0.834 36 H 0.167 0.833 37 H 0.138 0.862 38 H 0.081 0.919 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.865 -11.132 -15.521 19.488 hybrid contribution -0.560 1.005 1.169 1.640 sum 3.305 -10.127 -14.352 17.874 Atomic orbital electron populations 1.24091 0.95397 1.03732 0.97126 1.23212 0.96867 0.97515 1.03171 1.20345 0.88533 0.86699 0.93436 1.21732 0.98841 1.03803 0.94526 1.86590 1.50385 1.48162 1.50556 1.21780 0.81239 0.83022 0.86236 1.90686 1.57245 1.35824 1.61284 1.46077 1.51526 1.09068 1.28976 1.20095 0.95711 0.91811 0.87582 1.19434 0.95169 0.94652 0.96782 1.21001 0.98913 0.94981 1.03907 1.21163 0.97963 0.94514 0.95070 1.21382 0.98048 1.01450 1.04504 1.19844 0.90384 0.92473 0.91006 1.83945 1.43752 1.28486 1.57686 1.21862 1.13553 0.88245 1.25191 0.87919 1.26571 0.95312 1.04831 0.95295 1.70185 1.16902 1.39847 1.28897 0.84537 0.78997 0.74242 0.78498 1.17317 1.19398 1.19537 1.20216 1.02829 0.91939 1.05104 0.86906 0.86342 0.86199 0.89864 0.89386 0.90758 0.75760 0.74921 0.89344 0.91752 0.83420 0.83320 0.86162 0.91869 0.87381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 13.93 67.79 0.94 -1.60 16 2 C -0.19 -3.50 8.15 25.65 0.21 -3.29 16 3 C 0.15 2.97 1.29 -12.28 -0.02 2.96 16 4 C -0.13 -2.08 8.81 71.98 0.63 -1.44 16 5 O -0.55 -9.99 11.26 -148.98 -1.68 -11.66 16 6 C 0.49 12.23 6.69 87.66 0.59 12.82 16 7 O -0.57 -18.12 16.26 -3.01 -0.05 -18.17 16 8 N -0.70 -16.96 5.46 -466.77 -2.55 -19.51 16 9 C 0.17 4.60 5.80 85.63 0.50 5.10 16 10 C -0.06 -1.87 5.25 -19.88 -0.10 -1.98 16 11 C -0.17 -4.76 9.70 22.30 0.22 -4.54 16 12 C -0.07 -2.16 10.04 22.25 0.22 -1.93 16 13 C -0.23 -9.60 9.17 22.39 0.21 -9.39 16 14 C 0.11 5.40 6.65 22.58 0.15 5.55 16 15 O -0.23 -13.62 9.76 -22.74 -0.22 -13.84 16 16 C -0.41 -23.46 9.49 67.92 0.64 -22.81 16 17 H 0.10 5.33 5.21 -2.91 -0.02 5.31 16 18 C -0.02 -1.26 5.49 84.83 0.47 -0.79 16 19 N -0.92 -55.78 13.67 21.61 0.30 -55.48 16 20 Si 1.02 42.04 29.55 68.60 2.03 44.07 16 21 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 22 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 23 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 24 C -0.18 -7.34 9.65 22.39 0.22 -7.12 16 25 H 0.11 1.53 6.41 -2.91 -0.02 1.52 16 26 H 0.12 1.46 8.06 -2.91 -0.02 1.44 16 27 H 0.12 2.30 8.06 -2.91 -0.02 2.28 16 28 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.39 5.69 8.04 -74.06 -0.60 5.09 16 32 H 0.41 9.31 7.90 -92.71 -0.73 8.58 16 33 H 0.09 2.18 8.09 -2.38 -0.02 2.16 16 34 H 0.06 1.89 8.08 -2.39 -0.02 1.87 16 35 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 36 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 37 H 0.12 5.03 5.64 -2.91 -0.02 5.01 16 38 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 39 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -72.20 339.76 2.45 -69.75 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: -0.24 Total: 33.33 kcal Atomic # 6 Polarization: -33.36 SS G_CDS: 4.87 Total: -28.49 kcal Atomic # 7 Polarization: -72.73 SS G_CDS: -2.25 Total: -74.99 kcal Atomic # 8 Polarization: -41.72 SS G_CDS: -1.95 Total: -43.67 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -72.20 2.45 -69.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328322792.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.839 kcal (2) G-P(sol) polarization free energy of solvation -72.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds