Wall clock time and date at job start Tue Mar 31 2020 07:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35633 * 119.99748 * 2 1 4 4 C 1.41542 * 119.99954 * 5.65879 * 3 2 1 5 5 O 1.21779 * 120.00126 * 354.65673 * 4 3 2 6 6 N 1.34785 * 119.99770 * 174.65673 * 4 3 2 7 7 C 1.47416 * 125.64879 * 359.95769 * 6 4 3 8 8 C 1.55385 * 104.87332 * 204.16729 * 7 6 4 9 9 C 1.55158 * 101.36552 * 323.01683 * 8 7 6 10 10 O 1.42897 * 110.72018 * 277.04050 * 9 8 7 11 11 C 1.50701 * 110.71976 * 153.94548 * 9 8 7 12 12 H 1.08005 * 120.00191 * 2.44149 * 11 9 8 13 13 C 1.37879 * 119.99955 * 182.43994 * 11 9 8 14 14 N 1.31510 * 120.00208 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 119.99878 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47370 * 89.99713 * 15 13 11 17 17 H 1.48497 * 109.47208 * 210.00394 * 15 13 11 18 18 H 1.48507 * 109.47438 * 330.00149 * 15 13 11 19 19 C 1.47025 * 125.64441 * 180.02562 * 6 4 3 20 20 C 1.41607 * 120.00624 * 179.97438 * 2 1 3 21 21 C 1.37953 * 126.10300 * 295.00526 * 20 2 1 22 22 C 1.40315 * 106.52882 * 179.97438 * 21 20 2 23 23 C 1.35154 * 107.20217 * 359.97438 * 22 21 20 24 24 O 1.34016 * 109.03665 * 359.76883 * 23 22 21 25 25 H 1.09000 * 109.47088 * 58.20370 * 1 2 3 26 26 H 1.09011 * 109.47009 * 178.20198 * 1 2 3 27 27 H 1.08996 * 109.47349 * 298.19915 * 1 2 3 28 28 H 1.07998 * 119.99596 * 185.65514 * 3 2 1 29 29 H 1.08997 * 110.36794 * 323.00074 * 7 6 4 30 30 H 1.08997 * 110.36731 * 85.21319 * 7 6 4 31 31 H 1.08999 * 111.19125 * 204.97972 * 8 7 6 32 32 H 1.09001 * 111.02410 * 80.98373 * 8 7 6 33 33 H 0.96701 * 114.00241 * 177.55705 * 10 9 8 34 34 H 0.97000 * 119.99928 * 179.97438 * 14 13 11 35 35 H 1.08997 * 109.88352 * 59.48881 * 19 6 4 36 36 H 1.09006 * 109.87959 * 298.32204 * 19 6 4 37 37 H 1.08005 * 126.73769 * 359.94385 * 21 20 2 38 38 H 1.07997 * 126.39769 * 180.02562 * 22 21 20 39 39 H 1.08000 * 125.47758 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1851 1.1746 0.0000 4 6 1.4825 2.3974 0.1209 5 8 0.2647 2.4019 0.1269 6 7 2.1613 3.5568 0.2293 7 6 3.6289 3.6957 0.2368 8 6 3.8992 5.0324 0.9815 9 6 2.7183 5.9055 0.4809 10 8 3.0198 6.4823 -0.7912 11 6 2.3854 6.9785 1.4853 12 1 2.9742 7.0772 2.3854 13 6 1.3292 7.8344 1.2552 14 7 0.6119 7.7141 0.1595 15 14 0.9170 9.1649 2.4999 16 1 1.6686 10.4022 2.1692 17 1 -0.5407 9.4456 2.4601 18 1 1.2954 8.7047 3.8602 19 6 1.5606 4.8922 0.3611 20 6 2.2151 -1.2263 0.0005 21 6 2.2136 -2.1654 1.0111 22 6 3.0464 -3.2113 0.5853 23 6 3.5120 -2.8784 -0.6391 24 8 3.0066 -1.6878 -0.9900 25 1 -0.3633 0.5415 -0.8734 26 1 -0.3634 -1.0273 -0.0322 27 1 -0.3634 0.4856 0.9056 28 1 3.2611 1.1769 -0.0922 29 1 4.0859 2.8640 0.7730 30 1 4.0105 3.7440 -0.7830 31 1 4.8560 5.4621 0.6849 32 1 3.8528 4.8945 2.0617 33 1 2.2992 7.0074 -1.1658 34 1 -0.1314 8.3160 -0.0021 35 1 0.9385 4.9323 1.2552 36 1 0.9608 5.1176 -0.5208 37 1 1.6772 -2.1068 1.9467 38 1 3.2723 -4.1142 1.1332 39 1 4.1802 -3.4775 -1.2398 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328422344.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:27 Heat of formation + Delta-G solvation = -46.061918 kcal Electronic energy + Delta-G solvation = -23026.194622 eV Core-core repulsion = 19515.208173 eV Total energy + Delta-G solvation = -3510.986450 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.65740 -39.71541 -37.56248 -35.02766 -34.26936 -33.08148 -32.20174 -30.35461 -29.10633 -28.17727 -27.42299 -25.10653 -23.40956 -22.30682 -21.81205 -20.10910 -19.52898 -18.37295 -17.32510 -17.03494 -16.65305 -16.13117 -15.52978 -14.94619 -14.90694 -14.46036 -14.26734 -13.61250 -13.21367 -13.08567 -12.95379 -12.84967 -12.75293 -12.53136 -12.48384 -12.01877 -11.79578 -11.54333 -11.38969 -11.05148 -10.79141 -10.66495 -10.48851 -10.17838 -10.13806 -9.45552 -9.34154 -9.21854 -8.67725 -8.42499 -8.30909 -7.81261 -6.29296 -4.37873 0.86099 1.60717 2.40560 2.95779 3.20766 3.28461 3.31048 3.67069 3.79431 4.26789 4.59871 4.78025 4.90355 4.97386 4.98939 5.30253 5.39022 5.47354 5.60550 5.65920 5.71299 5.79936 5.86934 5.93898 6.00401 6.03899 6.16611 6.25912 6.34331 6.49723 6.54632 6.75773 6.85598 6.89306 6.99430 7.26471 7.37784 7.72742 8.00026 8.22030 8.63990 8.72027 9.30044 9.39708 10.78526 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.031315 B = 0.003430 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.928852 B = 8162.039172 C = 8477.275281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.014 3.986 3 C -0.174 4.174 4 C 0.547 3.453 5 O -0.548 6.548 6 N -0.605 5.605 7 C 0.099 3.901 8 C -0.117 4.117 9 C 0.247 3.753 10 O -0.586 6.586 11 C -0.538 4.538 12 H 0.066 0.934 13 C 0.070 3.930 14 N -0.895 5.895 15 Si 0.904 3.096 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.272 1.272 19 C 0.104 3.896 20 C 0.014 3.986 21 C -0.184 4.184 22 C -0.212 4.212 23 C -0.042 4.042 24 O -0.162 6.162 25 H 0.089 0.911 26 H 0.051 0.949 27 H 0.091 0.909 28 H 0.127 0.873 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.384 0.616 34 H 0.270 0.730 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.905 -17.578 -0.242 18.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.012 3.988 3 C -0.195 4.195 4 C 0.339 3.661 5 O -0.430 6.430 6 N -0.337 5.337 7 C -0.024 4.024 8 C -0.155 4.155 9 C 0.207 3.793 10 O -0.395 6.395 11 C -0.576 4.576 12 H 0.085 0.915 13 C -0.133 4.133 14 N -0.534 5.534 15 Si 0.731 3.269 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.018 4.018 20 C -0.036 4.036 21 C -0.203 4.203 22 C -0.231 4.231 23 C -0.110 4.110 24 O -0.058 6.058 25 H 0.108 0.892 26 H 0.070 0.930 27 H 0.109 0.891 28 H 0.145 0.855 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.235 0.765 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.170 0.830 38 H 0.168 0.832 39 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 4.694 -17.674 -0.517 18.294 hybrid contribution -0.592 0.811 0.661 1.202 sum 4.101 -16.864 0.144 17.356 Atomic orbital electron populations 1.20981 0.88417 1.01055 1.05101 1.19185 0.96082 0.88211 0.95365 1.22232 1.00785 0.92499 1.03990 1.16558 0.87199 0.83402 0.78952 1.90806 1.13336 1.87180 1.51667 1.48735 1.07672 1.07539 1.69798 1.22437 0.80840 0.98659 1.00450 1.22834 1.00081 0.93288 0.99315 1.19498 0.87783 0.89181 0.82874 1.86088 1.46114 1.70887 1.36410 1.21521 1.14807 1.15160 1.06140 0.91536 1.25074 0.95133 0.97376 0.95700 1.69642 1.19823 1.38424 1.25493 0.86397 0.77581 0.81542 0.81358 1.20383 1.20994 1.19708 1.23002 0.98237 0.78891 1.01665 1.19830 0.97965 0.96666 0.89102 1.22162 1.03803 0.93798 1.00575 1.21715 1.02685 1.01582 0.97164 1.24196 1.02410 0.86445 0.97986 1.84195 1.49513 1.31396 1.40653 0.89215 0.92979 0.89109 0.85536 0.91992 0.91611 0.90451 0.90479 0.76487 0.91955 0.91482 0.91602 0.82976 0.83198 0.78012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.40 8.32 36.00 0.30 -1.10 16 2 C 0.01 0.21 5.78 -104.27 -0.60 -0.40 16 3 C -0.17 -2.77 8.92 -39.25 -0.35 -3.12 16 4 C 0.55 10.79 7.58 -15.00 -0.11 10.68 16 5 O -0.55 -12.09 13.32 5.12 0.07 -12.02 16 6 N -0.61 -12.48 3.33 -173.65 -0.58 -13.06 16 7 C 0.10 1.76 6.46 -2.28 -0.01 1.74 16 8 C -0.12 -2.32 6.26 -24.32 -0.15 -2.47 16 9 C 0.25 5.95 0.85 -89.94 -0.08 5.87 16 10 O -0.59 -14.72 13.07 -35.23 -0.46 -15.18 16 11 C -0.54 -14.00 8.11 -34.44 -0.28 -14.28 16 12 H 0.07 1.70 7.77 -52.48 -0.41 1.29 16 13 C 0.07 1.83 5.27 -17.82 -0.09 1.73 16 14 N -0.89 -23.76 10.96 55.43 0.61 -23.15 16 15 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 C 0.10 2.50 5.38 -3.07 -0.02 2.48 16 20 C 0.01 0.18 6.29 -38.40 -0.24 -0.06 16 21 C -0.18 -2.06 10.90 -38.91 -0.42 -2.49 16 22 C -0.21 -1.98 10.87 -39.90 -0.43 -2.41 16 23 C -0.04 -0.38 12.06 29.63 0.36 -0.03 16 24 O -0.16 -2.03 10.67 4.71 0.05 -1.98 16 25 H 0.09 1.39 7.31 -51.93 -0.38 1.01 16 26 H 0.05 0.61 7.97 -51.92 -0.41 0.19 16 27 H 0.09 1.38 7.15 -51.93 -0.37 1.01 16 28 H 0.13 1.79 6.82 -52.49 -0.36 1.43 16 29 H 0.06 0.90 7.19 -51.93 -0.37 0.53 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 32 H 0.08 1.47 8.04 -51.93 -0.42 1.05 16 33 H 0.38 9.93 7.23 45.56 0.33 10.25 16 34 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16 35 H 0.07 1.75 7.81 -51.93 -0.41 1.35 16 36 H 0.07 1.74 8.00 -51.93 -0.42 1.32 16 37 H 0.15 1.48 8.06 -52.48 -0.42 1.06 16 38 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.20 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 329.30 15.07 4.96 4.96 Total: -1.00 -29.53 329.30 -6.97 -36.50 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -4.46 Total: 12.41 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -2.14 Total: -3.85 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.03 Total: -36.21 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -0.34 Total: -29.19 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.53 -6.97 -36.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328422344.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.561 kcal (2) G-P(sol) polarization free energy of solvation -29.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds