Wall clock time and date at job start Tue Mar 31 2020 07:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35633 * 119.99748 * 2 1 4 4 C 1.41542 * 119.99954 * 5.65879 * 3 2 1 5 5 O 1.21779 * 120.00126 * 354.65673 * 4 3 2 6 6 N 1.34785 * 119.99770 * 174.65673 * 4 3 2 7 7 C 1.47416 * 125.64879 * 359.95769 * 6 4 3 8 8 C 1.55385 * 104.87332 * 204.16729 * 7 6 4 9 9 C 1.55158 * 101.36552 * 323.01683 * 8 7 6 10 10 O 1.42897 * 110.72018 * 277.04050 * 9 8 7 11 11 C 1.50701 * 110.71976 * 153.94548 * 9 8 7 12 12 H 1.08005 * 120.00191 * 2.44149 * 11 9 8 13 13 C 1.37879 * 119.99955 * 182.43994 * 11 9 8 14 14 N 1.31510 * 120.00208 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 119.99878 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47370 * 89.99713 * 15 13 11 17 17 H 1.48497 * 109.47208 * 210.00394 * 15 13 11 18 18 H 1.48507 * 109.47438 * 330.00149 * 15 13 11 19 19 C 1.47025 * 125.64441 * 180.02562 * 6 4 3 20 20 C 1.41607 * 120.00624 * 179.97438 * 2 1 3 21 21 C 1.37953 * 126.10300 * 295.00526 * 20 2 1 22 22 C 1.40315 * 106.52882 * 179.97438 * 21 20 2 23 23 C 1.35154 * 107.20217 * 359.97438 * 22 21 20 24 24 O 1.34016 * 109.03665 * 359.76883 * 23 22 21 25 25 H 1.09000 * 109.47088 * 58.20370 * 1 2 3 26 26 H 1.09011 * 109.47009 * 178.20198 * 1 2 3 27 27 H 1.08996 * 109.47349 * 298.19915 * 1 2 3 28 28 H 1.07998 * 119.99596 * 185.65514 * 3 2 1 29 29 H 1.08997 * 110.36794 * 323.00074 * 7 6 4 30 30 H 1.08997 * 110.36731 * 85.21319 * 7 6 4 31 31 H 1.08999 * 111.19125 * 204.97972 * 8 7 6 32 32 H 1.09001 * 111.02410 * 80.98373 * 8 7 6 33 33 H 0.96701 * 114.00241 * 177.55705 * 10 9 8 34 34 H 0.97000 * 119.99928 * 179.97438 * 14 13 11 35 35 H 1.08997 * 109.88352 * 59.48881 * 19 6 4 36 36 H 1.09006 * 109.87959 * 298.32204 * 19 6 4 37 37 H 1.08005 * 126.73769 * 359.94385 * 21 20 2 38 38 H 1.07997 * 126.39769 * 180.02562 * 22 21 20 39 39 H 1.08000 * 125.47758 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1851 1.1746 0.0000 4 6 1.4825 2.3974 0.1209 5 8 0.2647 2.4019 0.1269 6 7 2.1613 3.5568 0.2293 7 6 3.6289 3.6957 0.2368 8 6 3.8992 5.0324 0.9815 9 6 2.7183 5.9055 0.4809 10 8 3.0198 6.4823 -0.7912 11 6 2.3854 6.9785 1.4853 12 1 2.9742 7.0772 2.3854 13 6 1.3292 7.8344 1.2552 14 7 0.6119 7.7141 0.1595 15 14 0.9170 9.1649 2.4999 16 1 1.6686 10.4022 2.1692 17 1 -0.5407 9.4456 2.4601 18 1 1.2954 8.7047 3.8602 19 6 1.5606 4.8922 0.3611 20 6 2.2151 -1.2263 0.0005 21 6 2.2136 -2.1654 1.0111 22 6 3.0464 -3.2113 0.5853 23 6 3.5120 -2.8784 -0.6391 24 8 3.0066 -1.6878 -0.9900 25 1 -0.3633 0.5415 -0.8734 26 1 -0.3634 -1.0273 -0.0322 27 1 -0.3634 0.4856 0.9056 28 1 3.2611 1.1769 -0.0922 29 1 4.0859 2.8640 0.7730 30 1 4.0105 3.7440 -0.7830 31 1 4.8560 5.4621 0.6849 32 1 3.8528 4.8945 2.0617 33 1 2.2992 7.0074 -1.1658 34 1 -0.1314 8.3160 -0.0021 35 1 0.9385 4.9323 1.2552 36 1 0.9608 5.1176 -0.5208 37 1 1.6772 -2.1068 1.9467 38 1 3.2723 -4.1142 1.1332 39 1 4.1802 -3.4775 -1.2398 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328422344.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:26 Heat of formation + Delta-G solvation = -65.666548 kcal Electronic energy + Delta-G solvation = -23027.044743 eV Core-core repulsion = 19515.208173 eV Total energy + Delta-G solvation = -3511.836570 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.48087 -41.28260 -39.25308 -36.37722 -35.95320 -34.21229 -33.88624 -32.00754 -30.26122 -29.54501 -28.94903 -26.87068 -24.77682 -23.63275 -22.58800 -21.53146 -21.02870 -19.67692 -19.16581 -18.34706 -17.88035 -17.25426 -17.03738 -16.65556 -16.31583 -15.90489 -15.75901 -15.08291 -14.77268 -14.74729 -14.13590 -13.98814 -13.87957 -13.80835 -13.51092 -13.47483 -13.31422 -13.28639 -12.89744 -12.79209 -12.46311 -12.32286 -12.28465 -12.08586 -11.19546 -10.94622 -10.80578 -10.64050 -10.59578 -10.28155 -9.55464 -9.22604 -8.27467 -6.43482 -0.29182 0.71068 1.40912 1.42712 1.52403 1.65813 2.02428 2.15960 2.34853 2.41473 2.98997 3.61393 3.78803 3.81413 3.99992 4.05844 4.10776 4.21363 4.24859 4.37507 4.45192 4.61778 4.69104 4.71366 4.77331 4.91637 4.96050 5.01459 5.07847 5.11006 5.12621 5.28507 5.35296 5.40769 5.52532 5.57969 5.73944 6.04125 6.09611 6.60954 6.67857 7.14456 7.27466 7.35116 8.78732 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.031315 B = 0.003430 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.928852 B = 8162.039172 C = 8477.275281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.045 3.955 3 C -0.197 4.197 4 C 0.544 3.456 5 O -0.584 6.584 6 N -0.614 5.614 7 C 0.104 3.896 8 C -0.112 4.112 9 C 0.231 3.769 10 O -0.589 6.589 11 C -0.558 4.558 12 H 0.067 0.933 13 C 0.025 3.975 14 N -0.917 5.917 15 Si 0.964 3.036 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.267 1.267 19 C 0.123 3.877 20 C -0.028 4.028 21 C -0.174 4.174 22 C -0.221 4.221 23 C -0.028 4.028 24 O -0.180 6.180 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.148 0.852 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.376 0.624 34 H 0.270 0.730 35 H 0.034 0.966 36 H 0.030 0.970 37 H 0.163 0.837 38 H 0.179 0.821 39 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.786 -20.098 0.468 21.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.042 3.958 3 C -0.217 4.217 4 C 0.339 3.661 5 O -0.468 6.468 6 N -0.346 5.346 7 C -0.018 4.018 8 C -0.149 4.149 9 C 0.191 3.809 10 O -0.397 6.397 11 C -0.596 4.596 12 H 0.086 0.914 13 C -0.176 4.176 14 N -0.556 5.556 15 Si 0.790 3.210 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.192 1.192 19 C -0.001 4.001 20 C -0.077 4.077 21 C -0.193 4.193 22 C -0.240 4.240 23 C -0.096 4.096 24 O -0.076 6.076 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.166 0.834 29 H 0.121 0.879 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.226 0.774 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.180 0.820 38 H 0.196 0.804 39 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 6.608 -20.213 0.198 21.266 hybrid contribution -1.195 1.407 0.423 1.894 sum 5.413 -18.806 0.621 19.579 Atomic orbital electron populations 1.20938 0.88823 1.02187 1.03555 1.19285 0.96030 0.88780 0.91694 1.22048 1.01535 0.90859 1.07302 1.17193 0.86992 0.84208 0.77737 1.90785 1.15033 1.87719 1.53272 1.48772 1.08954 1.06408 1.70441 1.22568 0.79034 0.98971 1.01198 1.22832 0.98802 0.93400 0.99915 1.19727 0.89768 0.89242 0.82151 1.86077 1.45763 1.70838 1.37025 1.21859 1.15094 1.15989 1.06697 0.91438 1.25830 0.95066 0.99378 0.97315 1.69752 1.20034 1.39040 1.26795 0.85455 0.77113 0.79104 0.79377 1.19765 1.21096 1.19152 1.22478 0.97796 0.81452 0.98348 1.19608 1.00424 0.97040 0.90672 1.22487 1.03096 0.93451 1.00289 1.22099 1.02265 1.02105 0.97495 1.25122 1.01100 0.85119 0.98243 1.84181 1.49745 1.32823 1.40820 0.90920 0.90366 0.90495 0.83444 0.87894 0.90946 0.89072 0.89748 0.77374 0.92034 0.94710 0.95140 0.81960 0.80386 0.74036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.80 8.32 71.23 0.59 -2.20 16 2 C 0.04 1.26 5.78 -19.64 -0.11 1.14 16 3 C -0.20 -6.12 8.92 22.48 0.20 -5.92 16 4 C 0.54 21.91 7.58 85.05 0.65 22.56 16 5 O -0.58 -27.00 13.32 -4.60 -0.06 -27.06 16 6 N -0.61 -25.70 3.33 -821.48 -2.73 -28.43 16 7 C 0.10 3.53 6.46 87.02 0.56 4.09 16 8 C -0.11 -4.31 6.26 32.15 0.20 -4.11 16 9 C 0.23 11.36 0.85 -10.35 -0.01 11.35 16 10 O -0.59 -30.29 13.07 -148.98 -1.95 -32.24 16 11 C -0.56 -29.55 8.11 25.60 0.21 -29.34 16 12 H 0.07 3.47 7.77 -2.91 -0.02 3.44 16 13 C 0.02 1.31 5.27 84.66 0.45 1.76 16 14 N -0.92 -50.40 10.96 21.45 0.24 -50.17 16 15 Si 0.96 42.32 29.54 68.60 2.03 44.35 16 16 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 17 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 18 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 19 C 0.12 6.19 5.38 86.73 0.47 6.66 16 20 C -0.03 -0.68 6.29 23.03 0.14 -0.53 16 21 C -0.17 -3.39 10.90 22.71 0.25 -3.14 16 22 C -0.22 -3.22 10.87 22.06 0.24 -2.98 16 23 C -0.03 -0.40 12.06 67.11 0.81 0.41 16 24 O -0.18 -4.01 10.67 -6.06 -0.06 -4.08 16 25 H 0.07 2.33 7.31 -2.39 -0.02 2.31 16 26 H 0.08 1.75 7.97 -2.38 -0.02 1.73 16 27 H 0.08 2.41 7.15 -2.39 -0.02 2.39 16 28 H 0.15 3.87 6.82 -2.91 -0.02 3.85 16 29 H 0.10 2.68 7.19 -2.39 -0.02 2.66 16 30 H 0.07 2.37 8.14 -2.39 -0.02 2.36 16 31 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 32 H 0.08 3.11 8.04 -2.39 -0.02 3.09 16 33 H 0.38 20.29 7.23 -74.06 -0.54 19.76 16 34 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 35 H 0.03 1.93 7.81 -2.39 -0.02 1.91 16 36 H 0.03 1.71 8.00 -2.38 -0.02 1.69 16 37 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 38 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 39 H 0.24 1.18 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -66.68 329.30 2.63 -64.05 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: 0.54 Total: 33.83 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 4.64 Total: -0.25 kcal Atomic # 7 Polarization: -76.10 SS G_CDS: -2.50 Total: -78.60 kcal Atomic # 8 Polarization: -61.30 SS G_CDS: -2.07 Total: -63.37 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -66.68 2.63 -64.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328422344.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.621 kcal (2) G-P(sol) polarization free energy of solvation -66.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds