Wall clock time and date at job start Tue Mar 31 2020 07:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35633 * 119.99705 * 2 1 4 4 C 1.41548 * 120.00083 * 179.97438 * 3 2 1 5 5 O 1.21782 * 120.00131 * 0.02562 * 4 3 2 6 6 N 1.34770 * 120.00440 * 180.02562 * 4 3 2 7 7 C 1.47433 * 125.64428 * 359.96045 * 6 4 3 8 8 C 1.55393 * 104.87396 * 204.16622 * 7 6 4 9 9 C 1.55158 * 101.36604 * 323.02138 * 8 7 6 10 10 O 1.42905 * 110.71665 * 277.04214 * 9 8 7 11 11 C 1.50698 * 110.72071 * 153.94900 * 9 8 7 12 12 H 1.08000 * 120.00108 * 2.43313 * 11 9 8 13 13 C 1.37875 * 119.99880 * 182.43864 * 11 9 8 14 14 N 1.31516 * 120.00122 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 120.00107 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47289 * 89.99941 * 15 13 11 17 17 H 1.48504 * 109.47431 * 210.00143 * 15 13 11 18 18 H 1.48509 * 109.47375 * 330.00068 * 15 13 11 19 19 C 1.47023 * 125.65372 * 180.02562 * 6 4 3 20 20 C 1.41606 * 120.00364 * 180.02562 * 2 1 3 21 21 C 1.37951 * 126.10343 * 294.99881 * 20 2 1 22 22 C 1.40312 * 106.53027 * 179.97438 * 21 20 2 23 23 C 1.35158 * 107.20386 * 0.02562 * 22 21 20 24 24 O 1.34020 * 109.03438 * 359.76884 * 23 22 21 25 25 H 1.08994 * 109.47212 * 89.99904 * 1 2 3 26 26 H 1.09008 * 109.46899 * 209.99631 * 1 2 3 27 27 H 1.08994 * 109.47274 * 329.99697 * 1 2 3 28 28 H 1.08002 * 120.00044 * 0.02562 * 3 2 1 29 29 H 1.08994 * 110.36621 * 323.00423 * 7 6 4 30 30 H 1.09005 * 110.36538 * 85.21633 * 7 6 4 31 31 H 1.09003 * 111.18887 * 204.98028 * 8 7 6 32 32 H 1.08998 * 111.02037 * 80.98017 * 8 7 6 33 33 H 0.96696 * 114.00036 * 177.55969 * 10 9 8 34 34 H 0.97000 * 119.99972 * 179.97438 * 14 13 11 35 35 H 1.09001 * 109.87979 * 59.49193 * 19 6 4 36 36 H 1.09001 * 109.87860 * 298.32082 * 19 6 4 37 37 H 1.08001 * 126.73717 * 359.93984 * 21 20 2 38 38 H 1.07991 * 126.39824 * 180.02562 * 22 21 20 39 39 H 1.08003 * 125.48312 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.1746 0.0000 4 6 3.6005 1.1747 0.0005 5 8 4.2095 0.1201 0.0005 6 7 4.2744 2.3419 0.0011 7 6 3.6664 3.6850 0.0003 8 6 4.7508 4.6134 -0.6136 9 6 6.0484 3.9980 -0.0261 10 8 6.2879 4.4892 1.2943 11 6 7.2266 4.2838 -0.9211 12 1 7.0967 4.8831 -1.8101 13 6 8.4705 3.7800 -0.6050 14 7 8.6289 3.0506 0.4778 15 14 9.9310 4.1336 -1.7147 16 1 10.5988 5.3836 -1.2709 17 1 10.8935 3.0051 -1.6409 18 1 9.4618 4.2932 -3.1146 19 6 5.7375 2.4867 0.0011 20 6 2.2151 -1.2263 -0.0005 21 6 2.2136 -2.1662 1.0092 22 6 3.0463 -3.2119 0.5825 23 6 3.5128 -2.8774 -0.6412 24 8 3.0079 -1.6862 -0.9909 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.6450 2.1099 0.0004 29 1 2.7671 3.6939 -0.6155 30 1 3.4313 3.9956 1.0184 31 1 4.6216 5.6435 -0.2813 32 1 4.7474 4.5522 -1.7018 33 1 7.0670 4.1069 1.7208 34 1 9.5039 2.6959 0.7000 35 1 6.1576 2.0058 -0.8822 36 1 6.1542 2.0389 0.9033 37 1 1.6774 -2.1084 1.9449 38 1 3.2722 -4.1151 1.1295 39 1 4.1818 -3.4756 -1.2421 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328422347.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:33 Heat of formation + Delta-G solvation = -44.338256 kcal Electronic energy + Delta-G solvation = -23562.395608 eV Core-core repulsion = 20051.483902 eV Total energy + Delta-G solvation = -3510.911706 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.13784 -39.54321 -37.43584 -35.12849 -34.25225 -32.55382 -32.19327 -30.28280 -28.71022 -28.44617 -27.48576 -25.05939 -23.04052 -22.17948 -21.32922 -19.99871 -19.44562 -18.52696 -17.27587 -16.96209 -16.33095 -15.61110 -15.41862 -15.02501 -14.81714 -14.29618 -13.84239 -13.44344 -13.22213 -13.04088 -12.88518 -12.85579 -12.65678 -12.58580 -12.26714 -11.94888 -11.90558 -11.60217 -11.39394 -11.05385 -10.81149 -10.65985 -10.48421 -10.17170 -9.60957 -9.47792 -9.33603 -9.24123 -8.66974 -8.31381 -7.93502 -7.71011 -6.28444 -4.37111 0.95024 2.14446 2.89163 3.21055 3.28660 3.31344 3.43351 3.76083 3.82016 4.27349 4.81874 4.85985 4.99551 5.23031 5.25181 5.30315 5.36920 5.39953 5.45172 5.62567 5.72950 5.80428 5.91078 6.00667 6.03416 6.11700 6.20259 6.31364 6.48884 6.50786 6.76049 6.79681 6.87264 7.03003 7.28106 7.39695 7.44312 7.73533 8.01032 8.26030 8.65330 8.78871 9.30723 9.40276 10.79399 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020660 B = 0.004487 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.977191 B = 6238.071493 C = 7086.916437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.009 3.991 3 C -0.178 4.178 4 C 0.540 3.460 5 O -0.536 6.536 6 N -0.606 5.606 7 C 0.100 3.900 8 C -0.117 4.117 9 C 0.247 3.753 10 O -0.586 6.586 11 C -0.538 4.538 12 H 0.066 0.934 13 C 0.071 3.929 14 N -0.895 5.895 15 Si 0.903 3.097 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.272 1.272 19 C 0.105 3.895 20 C 0.040 3.960 21 C -0.200 4.200 22 C -0.218 4.218 23 C -0.031 4.031 24 O -0.142 6.142 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.135 0.865 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.384 0.616 34 H 0.270 0.730 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.762 -6.091 -0.548 15.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.007 3.993 3 C -0.199 4.199 4 C 0.331 3.669 5 O -0.417 6.417 6 N -0.338 5.338 7 C -0.023 4.023 8 C -0.155 4.155 9 C 0.207 3.793 10 O -0.395 6.395 11 C -0.577 4.577 12 H 0.085 0.915 13 C -0.133 4.133 14 N -0.534 5.534 15 Si 0.731 3.269 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.017 4.017 20 C -0.011 4.011 21 C -0.219 4.219 22 C -0.237 4.237 23 C -0.101 4.101 24 O -0.035 6.035 25 H 0.100 0.900 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.153 0.847 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.235 0.765 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -14.798 -6.289 -0.844 16.101 hybrid contribution 1.577 -0.271 -0.161 1.609 sum -13.221 -6.560 -1.005 14.793 Atomic orbital electron populations 1.20901 0.89142 1.03642 1.03180 1.19180 0.95259 0.89295 0.95601 1.22370 0.94909 0.98334 1.04237 1.16717 0.87902 0.83296 0.78966 1.90832 1.70142 1.29840 1.50865 1.48716 1.09580 1.04920 1.70600 1.22427 0.96485 0.82986 1.00407 1.22832 0.94494 0.98385 0.99812 1.19496 0.91418 0.86484 0.81911 1.86083 1.52082 1.70584 1.30765 1.21522 0.92916 1.33597 1.09629 0.91541 1.25072 0.99256 0.93628 0.95295 1.69647 1.24651 1.34150 1.24944 0.86404 0.81687 0.77999 0.80832 1.20349 1.20999 1.19697 1.22970 0.76010 1.00893 1.01807 1.19291 0.96169 0.95440 0.90170 1.21870 1.05423 0.94524 1.00090 1.21501 1.03524 1.01542 0.97122 1.23960 1.01602 0.86393 0.98112 1.84167 1.48202 1.30578 1.40563 0.90031 0.90706 0.90398 0.84735 0.92003 0.91666 0.90457 0.90512 0.76499 0.91970 0.91638 0.91770 0.84000 0.83980 0.78820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.02 36.00 0.36 -0.65 16 2 C 0.01 0.13 5.78 -104.27 -0.60 -0.47 16 3 C -0.18 -2.75 8.99 -39.25 -0.35 -3.11 16 4 C 0.54 11.11 7.58 -15.00 -0.11 10.99 16 5 O -0.54 -12.78 13.15 -18.22 -0.24 -13.02 16 6 N -0.61 -12.75 3.33 -173.63 -0.58 -13.33 16 7 C 0.10 1.76 6.49 -2.26 -0.01 1.74 16 8 C -0.12 -2.33 6.26 -24.32 -0.15 -2.48 16 9 C 0.25 6.03 0.85 -89.94 -0.08 5.95 16 10 O -0.59 -14.86 13.08 -35.23 -0.46 -15.32 16 11 C -0.54 -14.19 8.11 -34.44 -0.28 -14.47 16 12 H 0.07 1.72 7.77 -52.49 -0.41 1.31 16 13 C 0.07 1.86 5.27 -17.82 -0.09 1.77 16 14 N -0.89 -24.15 10.96 55.43 0.61 -23.54 16 15 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 C 0.10 2.60 5.38 -3.06 -0.02 2.58 16 20 C 0.04 0.66 4.36 -38.40 -0.17 0.49 16 21 C -0.20 -3.01 10.90 -38.91 -0.42 -3.43 16 22 C -0.22 -3.13 10.87 -39.90 -0.43 -3.56 16 23 C -0.03 -0.47 12.06 29.64 0.36 -0.11 16 24 O -0.14 -2.56 8.93 -18.65 -0.17 -2.72 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.60 8.10 -51.92 -0.42 0.18 16 27 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 28 H 0.13 1.62 6.74 -52.49 -0.35 1.27 16 29 H 0.06 0.86 7.11 -51.93 -0.37 0.49 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.08 1.47 8.04 -51.93 -0.42 1.05 16 33 H 0.38 10.05 7.23 45.56 0.33 10.38 16 34 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.07 1.77 7.82 -51.93 -0.41 1.37 16 36 H 0.06 1.75 8.00 -51.93 -0.42 1.33 16 37 H 0.14 1.80 8.06 -52.49 -0.42 1.37 16 38 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.20 2.21 8.06 -52.48 -0.42 1.79 16 LS Contribution 329.00 15.07 4.96 4.96 Total: -1.00 -31.92 329.00 -7.46 -39.38 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -4.55 Total: 12.76 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -2.01 Total: -4.76 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.03 Total: -36.87 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -0.87 Total: -31.06 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.92 -7.46 -39.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328422347.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.958 kcal (2) G-P(sol) polarization free energy of solvation -31.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds