Wall clock time and date at job start Tue Mar 31 2020 07:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35633 * 119.99705 * 2 1 4 4 C 1.41548 * 120.00083 * 179.97438 * 3 2 1 5 5 O 1.21782 * 120.00131 * 0.02562 * 4 3 2 6 6 N 1.34770 * 120.00440 * 180.02562 * 4 3 2 7 7 C 1.47433 * 125.64428 * 359.96045 * 6 4 3 8 8 C 1.55393 * 104.87396 * 204.16622 * 7 6 4 9 9 C 1.55158 * 101.36604 * 323.02138 * 8 7 6 10 10 O 1.42905 * 110.71665 * 277.04214 * 9 8 7 11 11 C 1.50698 * 110.72071 * 153.94900 * 9 8 7 12 12 H 1.08000 * 120.00108 * 2.43313 * 11 9 8 13 13 C 1.37875 * 119.99880 * 182.43864 * 11 9 8 14 14 N 1.31516 * 120.00122 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 120.00107 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47289 * 89.99941 * 15 13 11 17 17 H 1.48504 * 109.47431 * 210.00143 * 15 13 11 18 18 H 1.48509 * 109.47375 * 330.00068 * 15 13 11 19 19 C 1.47023 * 125.65372 * 180.02562 * 6 4 3 20 20 C 1.41606 * 120.00364 * 180.02562 * 2 1 3 21 21 C 1.37951 * 126.10343 * 294.99881 * 20 2 1 22 22 C 1.40312 * 106.53027 * 179.97438 * 21 20 2 23 23 C 1.35158 * 107.20386 * 0.02562 * 22 21 20 24 24 O 1.34020 * 109.03438 * 359.76884 * 23 22 21 25 25 H 1.08994 * 109.47212 * 89.99904 * 1 2 3 26 26 H 1.09008 * 109.46899 * 209.99631 * 1 2 3 27 27 H 1.08994 * 109.47274 * 329.99697 * 1 2 3 28 28 H 1.08002 * 120.00044 * 0.02562 * 3 2 1 29 29 H 1.08994 * 110.36621 * 323.00423 * 7 6 4 30 30 H 1.09005 * 110.36538 * 85.21633 * 7 6 4 31 31 H 1.09003 * 111.18887 * 204.98028 * 8 7 6 32 32 H 1.08998 * 111.02037 * 80.98017 * 8 7 6 33 33 H 0.96696 * 114.00036 * 177.55969 * 10 9 8 34 34 H 0.97000 * 119.99972 * 179.97438 * 14 13 11 35 35 H 1.09001 * 109.87979 * 59.49193 * 19 6 4 36 36 H 1.09001 * 109.87860 * 298.32082 * 19 6 4 37 37 H 1.08001 * 126.73717 * 359.93984 * 21 20 2 38 38 H 1.07991 * 126.39824 * 180.02562 * 22 21 20 39 39 H 1.08003 * 125.48312 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.1746 0.0000 4 6 3.6005 1.1747 0.0005 5 8 4.2095 0.1201 0.0005 6 7 4.2744 2.3419 0.0011 7 6 3.6664 3.6850 0.0003 8 6 4.7508 4.6134 -0.6136 9 6 6.0484 3.9980 -0.0261 10 8 6.2879 4.4892 1.2943 11 6 7.2266 4.2838 -0.9211 12 1 7.0967 4.8831 -1.8101 13 6 8.4705 3.7800 -0.6050 14 7 8.6289 3.0506 0.4778 15 14 9.9310 4.1336 -1.7147 16 1 10.5988 5.3836 -1.2709 17 1 10.8935 3.0051 -1.6409 18 1 9.4618 4.2932 -3.1146 19 6 5.7375 2.4867 0.0011 20 6 2.2151 -1.2263 -0.0005 21 6 2.2136 -2.1662 1.0092 22 6 3.0463 -3.2119 0.5825 23 6 3.5128 -2.8774 -0.6412 24 8 3.0079 -1.6862 -0.9909 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.6450 2.1099 0.0004 29 1 2.7671 3.6939 -0.6155 30 1 3.4313 3.9956 1.0184 31 1 4.6216 5.6435 -0.2813 32 1 4.7474 4.5522 -1.7018 33 1 7.0670 4.1069 1.7208 34 1 9.5039 2.6959 0.7000 35 1 6.1576 2.0058 -0.8822 36 1 6.1542 2.0389 0.9033 37 1 1.6774 -2.1084 1.9449 38 1 3.2722 -4.1151 1.1295 39 1 4.1818 -3.4756 -1.2421 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328422347.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:32 Heat of formation + Delta-G solvation = -65.648725 kcal Electronic energy + Delta-G solvation = -23563.319700 eV Core-core repulsion = 20051.483902 eV Total energy + Delta-G solvation = -3511.835798 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.32456 -41.12678 -39.13258 -36.35519 -36.01399 -34.23108 -33.73133 -31.94944 -30.13382 -29.55900 -28.99316 -26.85573 -24.52008 -23.46316 -22.49807 -21.55929 -21.06783 -19.80594 -19.18288 -18.46451 -17.66852 -17.22817 -16.85520 -16.55974 -16.48506 -16.04088 -15.06468 -14.84798 -14.74755 -14.71490 -14.21814 -14.03082 -13.81054 -13.73486 -13.54127 -13.47911 -13.32676 -13.11534 -12.86987 -12.74850 -12.52539 -12.33506 -12.30025 -12.09611 -11.20645 -11.04633 -10.76055 -10.66406 -10.41463 -10.29808 -9.53493 -8.99275 -8.29555 -6.45859 -0.22941 0.96586 1.38694 1.40221 1.50108 1.75279 2.15769 2.25343 2.36315 2.50494 2.97093 3.69141 3.79414 3.81123 4.08256 4.14130 4.21205 4.23220 4.28392 4.42780 4.51700 4.64323 4.69248 4.76888 4.81661 4.95024 4.97767 5.00348 5.11367 5.12092 5.24234 5.30543 5.35479 5.43311 5.54685 5.70723 5.72825 6.02528 6.27292 6.60290 6.70969 7.21854 7.25327 7.32788 8.76584 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020660 B = 0.004487 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.977191 B = 6238.071493 C = 7086.916437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.032 3.968 3 C -0.204 4.204 4 C 0.532 3.468 5 O -0.583 6.583 6 N -0.614 5.614 7 C 0.105 3.895 8 C -0.112 4.112 9 C 0.232 3.768 10 O -0.588 6.588 11 C -0.559 4.559 12 H 0.068 0.932 13 C 0.024 3.976 14 N -0.918 5.918 15 Si 0.964 3.036 16 H -0.270 1.270 17 H -0.286 1.286 18 H -0.267 1.267 19 C 0.125 3.875 20 C 0.008 3.992 21 C -0.207 4.207 22 C -0.224 4.224 23 C -0.051 4.051 24 O -0.172 6.172 25 H 0.100 0.900 26 H 0.085 0.915 27 H 0.105 0.895 28 H 0.175 0.825 29 H 0.111 0.889 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.376 0.624 34 H 0.270 0.730 35 H 0.027 0.973 36 H 0.024 0.976 37 H 0.164 0.836 38 H 0.169 0.831 39 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.305 -5.542 -0.907 18.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.029 3.971 3 C -0.224 4.224 4 C 0.326 3.674 5 O -0.467 6.467 6 N -0.346 5.346 7 C -0.017 4.017 8 C -0.150 4.150 9 C 0.191 3.809 10 O -0.396 6.396 11 C -0.597 4.597 12 H 0.086 0.914 13 C -0.176 4.176 14 N -0.558 5.558 15 Si 0.789 3.211 16 H -0.195 1.195 17 H -0.212 1.212 18 H -0.191 1.191 19 C 0.001 3.999 20 C -0.042 4.042 21 C -0.226 4.226 22 C -0.242 4.242 23 C -0.119 4.119 24 O -0.067 6.067 25 H 0.118 0.882 26 H 0.104 0.896 27 H 0.124 0.876 28 H 0.192 0.808 29 H 0.129 0.871 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.101 0.899 33 H 0.225 0.775 34 H 0.079 0.921 35 H 0.045 0.955 36 H 0.043 0.957 37 H 0.182 0.818 38 H 0.186 0.814 39 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -17.384 -5.713 -1.202 18.338 hybrid contribution 2.365 -0.592 -0.027 2.438 sum -15.019 -6.304 -1.229 16.335 Atomic orbital electron populations 1.21068 0.85002 1.05583 1.04786 1.19875 0.97768 0.87783 0.91656 1.22325 0.91717 1.00678 1.07667 1.17631 0.90016 0.82252 0.77530 1.90803 1.71596 1.31402 1.52914 1.48780 1.07877 1.06817 1.71148 1.22605 0.97041 0.80214 1.01825 1.22835 0.92570 0.99519 1.00083 1.19726 0.93245 0.86576 0.81305 1.86071 1.51590 1.70548 1.31371 1.21888 0.94066 1.33670 1.10121 0.91403 1.25842 1.01829 0.93429 0.96520 1.69763 1.25019 1.34790 1.26223 0.85463 0.78526 0.77833 0.79289 1.19512 1.21172 1.19130 1.22411 0.78798 1.00735 0.97922 1.20000 0.96704 0.96891 0.90650 1.22288 1.05418 0.94278 1.00573 1.21921 1.02969 1.02363 0.96976 1.24654 1.02011 0.86082 0.99197 1.84136 1.49021 1.31785 1.41748 0.88194 0.89614 0.87614 0.80757 0.87143 0.90692 0.88908 0.89921 0.77469 0.92089 0.95473 0.95745 0.81805 0.81388 0.76365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 10.02 71.23 0.71 -0.78 16 2 C 0.03 0.82 5.78 -19.64 -0.11 0.71 16 3 C -0.20 -5.85 8.99 22.48 0.20 -5.65 16 4 C 0.53 21.93 7.58 85.06 0.64 22.57 16 5 O -0.58 -28.88 13.15 17.70 0.23 -28.65 16 6 N -0.61 -25.92 3.33 -821.43 -2.73 -28.66 16 7 C 0.10 3.42 6.49 87.02 0.56 3.98 16 8 C -0.11 -4.30 6.26 32.16 0.20 -4.10 16 9 C 0.23 11.49 0.85 -10.35 -0.01 11.48 16 10 O -0.59 -30.42 13.08 -148.98 -1.95 -32.36 16 11 C -0.56 -30.01 8.11 25.60 0.21 -29.80 16 12 H 0.07 3.52 7.77 -2.91 -0.02 3.50 16 13 C 0.02 1.31 5.27 84.65 0.45 1.76 16 14 N -0.92 -51.46 10.96 21.45 0.24 -51.23 16 15 Si 0.96 42.88 29.54 68.60 2.03 44.91 16 16 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 17 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 19 C 0.13 6.48 5.38 86.73 0.47 6.94 16 20 C 0.01 0.25 4.36 23.03 0.10 0.35 16 21 C -0.21 -5.99 10.90 22.71 0.25 -5.74 16 22 C -0.22 -6.25 10.87 22.06 0.24 -6.01 16 23 C -0.05 -1.55 12.06 67.11 0.81 -0.74 16 24 O -0.17 -6.30 8.93 16.17 0.14 -6.16 16 25 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.09 1.04 8.10 -2.38 -0.02 1.02 16 27 H 0.11 0.94 8.08 -2.39 -0.02 0.92 16 28 H 0.18 3.42 6.74 -2.91 -0.02 3.40 16 29 H 0.11 2.58 7.11 -2.39 -0.02 2.56 16 30 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 31 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 32 H 0.08 3.04 8.04 -2.39 -0.02 3.02 16 33 H 0.38 20.50 7.23 -74.06 -0.54 19.96 16 34 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 35 H 0.03 1.56 7.82 -2.39 -0.02 1.54 16 36 H 0.02 1.41 8.00 -2.39 -0.02 1.39 16 37 H 0.16 3.82 8.06 -2.91 -0.02 3.80 16 38 H 0.17 3.62 8.06 -2.92 -0.02 3.60 16 39 H 0.22 5.00 8.06 -2.91 -0.02 4.98 16 Total: -1.00 -74.07 329.00 3.21 -70.86 By element: Atomic # 1 Polarization: 35.78 SS G_CDS: 0.53 Total: 36.32 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 4.72 Total: -5.03 kcal Atomic # 7 Polarization: -77.39 SS G_CDS: -2.50 Total: -79.89 kcal Atomic # 8 Polarization: -65.60 SS G_CDS: -1.57 Total: -67.17 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -74.07 3.21 -70.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328422347.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.213 kcal (2) G-P(sol) polarization free energy of solvation -74.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds