Wall clock time and date at job start Tue Mar 31 2020 06:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47075 * 2 1 4 4 C 1.50697 * 109.46880 * 120.00146 * 2 1 3 5 5 C 1.37963 * 120.07786 * 306.15587 * 4 2 1 6 6 C 1.38343 * 120.14999 * 179.72477 * 5 4 2 7 7 C 1.38396 * 120.30738 * 0.27719 * 6 5 4 8 8 C 1.37925 * 120.14578 * 0.02562 * 7 6 5 9 9 C 1.39616 * 120.07718 * 126.45351 * 4 2 1 10 10 C 1.47726 * 120.14868 * 359.97438 * 9 4 2 11 11 O 1.21470 * 120.00074 * 39.08655 * 10 9 4 12 12 O 1.34712 * 120.00293 * 219.08986 * 10 9 4 13 13 C 1.45197 * 117.00126 * 180.02562 * 12 10 9 14 14 C 1.50700 * 109.47018 * 179.97438 * 13 12 10 15 15 O 1.21290 * 120.00201 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99979 * 179.97438 * 14 13 12 17 17 C 1.37090 * 119.99957 * 179.97438 * 16 14 13 18 18 H 1.08000 * 120.00794 * 0.02562 * 17 16 14 19 19 C 1.38956 * 120.00051 * 180.02562 * 17 16 14 20 20 N 1.31415 * 120.00016 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00198 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46858 * 89.99876 * 21 19 17 23 23 H 1.48495 * 109.47050 * 210.00100 * 21 19 17 24 24 H 1.48500 * 109.46934 * 330.00011 * 21 19 17 25 25 H 1.08995 * 109.47486 * 299.99708 * 1 2 3 26 26 H 1.09001 * 109.47356 * 60.00067 * 1 2 3 27 27 H 1.09008 * 109.47006 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47120 * 239.99714 * 2 1 3 29 29 H 1.09003 * 109.46873 * 60.00442 * 3 2 1 30 30 H 1.08998 * 109.47136 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46973 * 300.00167 * 3 2 1 32 32 H 1.07999 * 119.92475 * 0.02562 * 5 4 2 33 33 H 1.08004 * 119.85323 * 180.25040 * 6 5 4 34 34 H 1.07997 * 119.92662 * 180.02562 * 7 6 5 35 35 H 1.08002 * 120.07854 * 179.97438 * 8 7 6 36 36 H 1.09004 * 109.47336 * 299.99373 * 13 12 10 37 37 H 1.08999 * 109.47301 * 59.99690 * 13 12 10 38 38 H 0.96998 * 120.00077 * 0.02562 * 16 14 13 39 39 H 0.96999 * 120.00005 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.5986 -0.3190 2.4803 6 6 2.0544 -0.9739 3.6105 7 6 2.9518 -2.0213 3.4966 8 6 3.3983 -2.4188 2.2537 9 6 2.9423 -1.7622 1.1086 10 6 3.4157 -2.1830 -0.2260 11 8 3.6498 -1.3494 -1.0780 12 8 3.5877 -3.4910 -0.4982 13 6 4.0557 -3.8312 -1.8299 14 6 4.1885 -5.3277 -1.9487 15 8 3.9160 -6.0376 -1.0037 16 7 4.6101 -5.8772 -3.1049 17 6 4.7314 -7.2384 -3.2127 18 1 4.4887 -7.8706 -2.3714 19 6 5.1665 -7.8049 -4.4046 20 7 5.4623 -7.0358 -5.4283 21 14 5.3311 -9.6599 -4.5518 22 1 4.0497 -10.2336 -5.0355 23 1 6.4140 -9.9859 -5.5142 24 1 5.6605 -10.2346 -3.2227 25 1 -0.3634 0.5137 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 0.8981 0.4973 2.5763 33 1 1.7086 -0.6661 4.5863 34 1 3.3032 -2.5284 4.3830 35 1 4.0989 -3.2361 2.1661 36 1 3.3413 -3.4697 -2.5696 37 1 5.0258 -3.3658 -2.0040 38 1 4.8284 -5.3094 -3.8605 39 1 5.7664 -7.4312 -6.2601 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333240430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:50 Heat of formation + Delta-G solvation = -106.217651 kcal Electronic energy + Delta-G solvation = -22495.856234 eV Core-core repulsion = 18982.261236 eV Total energy + Delta-G solvation = -3513.594998 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.74679 -39.17134 -38.02263 -36.20704 -35.33947 -33.99708 -31.66786 -31.34766 -30.00720 -28.35556 -27.25438 -24.93325 -23.89259 -23.61078 -20.96962 -20.10378 -19.56483 -18.06799 -17.94701 -16.83780 -16.48857 -16.02950 -15.63402 -15.26247 -14.72962 -14.34913 -14.18891 -14.07094 -13.93876 -13.76938 -13.59987 -12.99085 -12.64578 -12.39521 -12.33567 -12.18554 -11.99006 -11.76385 -11.62062 -11.27194 -11.17062 -11.07713 -10.85551 -10.44226 -10.41080 -10.29882 -10.04597 -9.60425 -9.15941 -8.92845 -8.51903 -8.08146 -6.49856 -3.91845 0.71914 1.18293 2.42525 2.72686 3.13450 3.23600 3.29831 3.58008 3.74035 4.11329 4.43024 4.53218 4.64767 4.83257 4.96333 5.00837 5.07610 5.15134 5.18970 5.27524 5.30105 5.48441 5.50088 5.66889 5.68334 5.69346 5.71233 5.85277 5.93678 6.01981 6.05255 6.14404 6.16458 6.26355 6.38456 6.61970 6.71146 7.47960 7.82250 7.95909 8.48757 9.07256 9.39458 9.89460 10.67391 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.027028 B = 0.003143 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.725326 B = 8907.175770 C = 9541.067609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.134 4.134 4 C -0.018 4.018 5 C -0.128 4.128 6 C -0.090 4.090 7 C -0.134 4.134 8 C -0.061 4.061 9 C -0.113 4.113 10 C 0.505 3.495 11 O -0.502 6.502 12 O -0.319 6.319 13 C 0.060 3.940 14 C 0.438 3.562 15 O -0.575 6.575 16 N -0.552 5.552 17 C -0.303 4.303 18 H 0.106 0.894 19 C 0.025 3.975 20 N -0.897 5.897 21 Si 0.934 3.066 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.268 1.268 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.101 0.899 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.139 0.861 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.395 0.605 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.832 15.678 12.799 21.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.098 4.098 3 C -0.191 4.191 4 C -0.018 4.018 5 C -0.145 4.145 6 C -0.108 4.108 7 C -0.152 4.152 8 C -0.079 4.079 9 C -0.114 4.114 10 C 0.349 3.651 11 O -0.392 6.392 12 O -0.233 6.233 13 C -0.018 4.018 14 C 0.223 3.777 15 O -0.459 6.459 16 N -0.190 5.190 17 C -0.432 4.432 18 H 0.124 0.876 19 C -0.177 4.177 20 N -0.538 5.538 21 Si 0.760 3.240 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.193 1.193 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.119 0.881 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.156 0.844 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.228 0.772 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.862 15.353 12.956 21.229 hybrid contribution 0.343 -0.531 -0.784 1.007 sum -6.519 14.821 12.172 20.257 Atomic orbital electron populations 1.21888 0.94256 1.02128 1.01913 1.20511 0.95857 0.96998 0.96441 1.21724 1.01653 0.94237 1.01470 1.19885 0.93418 0.92815 0.95727 1.20895 1.01380 1.00982 0.91289 1.21367 0.95819 0.95008 0.98647 1.21132 0.98639 0.98050 0.97413 1.21460 0.97916 0.97210 0.91361 1.19008 1.02457 0.99245 0.90654 1.21297 0.74553 0.81187 0.88045 1.90784 1.47132 1.53013 1.48279 1.86658 1.76667 1.25149 1.34813 1.22783 1.00784 0.96954 0.81260 1.19307 0.85778 0.87494 0.85101 1.90563 1.54683 1.62272 1.38404 1.41697 1.57664 1.08165 1.11454 1.19728 1.42338 0.81517 0.99575 0.87612 1.25313 0.96722 1.00796 0.94915 1.69615 1.44657 1.36099 1.03405 0.85798 0.78004 0.81750 0.78405 1.20255 1.20811 1.19266 0.92536 0.92095 0.92489 0.88147 0.92902 0.92218 0.92251 0.85275 0.85530 0.85159 0.84353 0.89459 0.89431 0.77153 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.94 37.16 0.33 -1.05 16 2 C -0.08 -0.93 2.65 -91.77 -0.24 -1.17 16 3 C -0.13 -1.34 9.06 37.16 0.34 -1.00 16 4 C -0.02 -0.22 4.81 -104.21 -0.50 -0.72 16 5 C -0.13 -1.24 8.76 -39.64 -0.35 -1.58 16 6 C -0.09 -0.80 10.04 -39.48 -0.40 -1.20 16 7 C -0.13 -1.34 10.03 -39.64 -0.40 -1.74 16 8 C -0.06 -0.78 9.66 -39.17 -0.38 -1.16 16 9 C -0.11 -1.61 5.81 -104.98 -0.61 -2.22 16 10 C 0.50 8.56 7.03 34.61 0.24 8.81 16 11 O -0.50 -8.90 14.25 -19.24 -0.27 -9.18 16 12 O -0.32 -6.17 9.61 -47.20 -0.45 -6.62 16 13 C 0.06 1.16 5.95 36.01 0.21 1.37 16 14 C 0.44 10.67 7.86 -10.98 -0.09 10.58 16 15 O -0.58 -16.11 16.08 -14.11 -0.23 -16.33 16 16 N -0.55 -14.04 5.29 -10.96 -0.06 -14.10 16 17 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 18 H 0.11 3.06 7.16 -52.49 -0.38 2.68 16 19 C 0.02 0.66 5.50 -17.46 -0.10 0.56 16 20 N -0.90 -24.11 13.05 55.50 0.72 -23.39 16 21 Si 0.93 20.74 29.55 -169.99 -5.02 15.72 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 25 H 0.06 0.44 7.07 -51.93 -0.37 0.08 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 28 H 0.10 1.43 5.10 -51.93 -0.26 1.16 16 29 H 0.05 0.44 7.78 -51.93 -0.40 0.03 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.13 0.96 7.10 -52.49 -0.37 0.58 16 33 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 34 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 38 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 39 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 338.37 15.07 5.10 5.10 Total: -1.00 -32.04 338.37 -7.33 -39.38 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -5.05 Total: 8.45 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -2.07 Total: 0.97 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.67 Total: -37.48 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.95 Total: -32.14 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.04 -7.33 -39.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333240430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.840 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds