Wall clock time and date at job start Tue Mar 31 2020 06:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47075 * 2 1 4 4 C 1.50697 * 109.46880 * 120.00146 * 2 1 3 5 5 C 1.37963 * 120.07786 * 306.15587 * 4 2 1 6 6 C 1.38343 * 120.14999 * 179.72477 * 5 4 2 7 7 C 1.38396 * 120.30738 * 0.27719 * 6 5 4 8 8 C 1.37925 * 120.14578 * 0.02562 * 7 6 5 9 9 C 1.39616 * 120.07718 * 126.45351 * 4 2 1 10 10 C 1.47726 * 120.14868 * 359.97438 * 9 4 2 11 11 O 1.21470 * 120.00074 * 39.08655 * 10 9 4 12 12 O 1.34712 * 120.00293 * 219.08986 * 10 9 4 13 13 C 1.45197 * 117.00126 * 180.02562 * 12 10 9 14 14 C 1.50700 * 109.47018 * 179.97438 * 13 12 10 15 15 O 1.21290 * 120.00201 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99979 * 179.97438 * 14 13 12 17 17 C 1.37090 * 119.99957 * 179.97438 * 16 14 13 18 18 H 1.08000 * 120.00794 * 0.02562 * 17 16 14 19 19 C 1.38956 * 120.00051 * 180.02562 * 17 16 14 20 20 N 1.31415 * 120.00016 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00198 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46858 * 89.99876 * 21 19 17 23 23 H 1.48495 * 109.47050 * 210.00100 * 21 19 17 24 24 H 1.48500 * 109.46934 * 330.00011 * 21 19 17 25 25 H 1.08995 * 109.47486 * 299.99708 * 1 2 3 26 26 H 1.09001 * 109.47356 * 60.00067 * 1 2 3 27 27 H 1.09008 * 109.47006 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47120 * 239.99714 * 2 1 3 29 29 H 1.09003 * 109.46873 * 60.00442 * 3 2 1 30 30 H 1.08998 * 109.47136 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46973 * 300.00167 * 3 2 1 32 32 H 1.07999 * 119.92475 * 0.02562 * 5 4 2 33 33 H 1.08004 * 119.85323 * 180.25040 * 6 5 4 34 34 H 1.07997 * 119.92662 * 180.02562 * 7 6 5 35 35 H 1.08002 * 120.07854 * 179.97438 * 8 7 6 36 36 H 1.09004 * 109.47336 * 299.99373 * 13 12 10 37 37 H 1.08999 * 109.47301 * 59.99690 * 13 12 10 38 38 H 0.96998 * 120.00077 * 0.02562 * 16 14 13 39 39 H 0.96999 * 120.00005 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.5986 -0.3190 2.4803 6 6 2.0544 -0.9739 3.6105 7 6 2.9518 -2.0213 3.4966 8 6 3.3983 -2.4188 2.2537 9 6 2.9423 -1.7622 1.1086 10 6 3.4157 -2.1830 -0.2260 11 8 3.6498 -1.3494 -1.0780 12 8 3.5877 -3.4910 -0.4982 13 6 4.0557 -3.8312 -1.8299 14 6 4.1885 -5.3277 -1.9487 15 8 3.9160 -6.0376 -1.0037 16 7 4.6101 -5.8772 -3.1049 17 6 4.7314 -7.2384 -3.2127 18 1 4.4887 -7.8706 -2.3714 19 6 5.1665 -7.8049 -4.4046 20 7 5.4623 -7.0358 -5.4283 21 14 5.3311 -9.6599 -4.5518 22 1 4.0497 -10.2336 -5.0355 23 1 6.4140 -9.9859 -5.5142 24 1 5.6605 -10.2346 -3.2227 25 1 -0.3634 0.5137 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 0.8981 0.4973 2.5763 33 1 1.7086 -0.6661 4.5863 34 1 3.3032 -2.5284 4.3830 35 1 4.0989 -3.2361 2.1661 36 1 3.3413 -3.4697 -2.5696 37 1 5.0258 -3.3658 -2.0040 38 1 4.8284 -5.3094 -3.8605 39 1 5.7664 -7.4312 -6.2601 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333240430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:49 Heat of formation + Delta-G solvation = -124.564791 kcal Electronic energy + Delta-G solvation = -22496.651826 eV Core-core repulsion = 18982.261236 eV Total energy + Delta-G solvation = -3514.390590 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.97479 -40.45228 -39.73804 -37.58979 -36.26198 -36.04720 -33.45753 -32.57091 -30.83180 -30.01495 -28.00953 -26.76741 -25.13060 -24.43393 -22.14336 -21.48308 -20.96144 -20.10492 -19.18384 -18.15098 -17.88263 -17.55520 -16.94693 -16.55204 -16.30577 -15.87683 -15.55674 -15.32848 -15.00064 -14.81013 -14.56942 -14.47485 -13.97794 -13.72982 -13.57780 -13.34347 -13.09651 -12.96141 -12.94167 -12.61536 -12.50203 -12.21473 -12.12853 -12.08619 -11.87642 -11.66393 -11.60489 -11.14913 -10.55939 -10.14824 -10.02524 -9.75948 -8.54675 -6.05707 -0.23670 0.35749 1.17228 1.34260 1.37354 1.44485 1.56767 1.83212 2.28143 2.71829 2.98701 3.10516 3.53379 3.63170 3.77223 3.98138 4.07733 4.10451 4.17081 4.23477 4.26927 4.42310 4.43564 4.45893 4.78124 4.79592 4.88481 4.94995 5.06043 5.13461 5.17488 5.21381 5.34544 5.37410 5.37677 5.46839 5.60786 5.85861 5.91522 6.41262 6.54147 6.99874 7.36007 7.89525 8.62388 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.027028 B = 0.003143 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.725326 B = 8907.175770 C = 9541.067609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 C -0.129 4.129 4 C -0.027 4.027 5 C -0.124 4.124 6 C -0.075 4.075 7 C -0.133 4.133 8 C -0.080 4.080 9 C -0.146 4.146 10 C 0.504 3.496 11 O -0.516 6.516 12 O -0.339 6.339 13 C 0.070 3.930 14 C 0.436 3.564 15 O -0.617 6.617 16 N -0.556 5.556 17 C -0.340 4.340 18 H 0.084 0.916 19 C -0.008 4.008 20 N -0.915 5.915 21 Si 0.999 3.001 22 H -0.269 1.269 23 H -0.269 1.269 24 H -0.270 1.270 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.043 0.957 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.161 0.839 33 H 0.168 0.832 34 H 0.156 0.844 35 H 0.125 0.875 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.400 0.600 39 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.868 16.943 14.260 23.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.102 4.102 3 C -0.186 4.186 4 C -0.027 4.027 5 C -0.141 4.141 6 C -0.093 4.093 7 C -0.151 4.151 8 C -0.098 4.098 9 C -0.147 4.147 10 C 0.350 3.650 11 O -0.407 6.407 12 O -0.255 6.255 13 C -0.007 4.007 14 C 0.223 3.777 15 O -0.504 6.504 16 N -0.193 5.193 17 C -0.469 4.469 18 H 0.102 0.898 19 C -0.209 4.209 20 N -0.555 5.555 21 Si 0.822 3.178 22 H -0.194 1.194 23 H -0.193 1.193 24 H -0.195 1.195 25 H 0.099 0.901 26 H 0.086 0.914 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.178 0.822 33 H 0.185 0.815 34 H 0.174 0.826 35 H 0.143 0.857 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.235 0.765 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.892 16.652 14.394 23.383 hybrid contribution 0.641 -0.851 -1.181 1.591 sum -7.251 15.801 13.213 21.837 Atomic orbital electron populations 1.21864 0.92557 1.01779 1.03507 1.20500 0.97258 0.97477 0.94966 1.21695 1.00413 0.93446 1.03025 1.20096 0.93159 0.92299 0.97191 1.21274 1.01211 1.01444 0.90211 1.21856 0.93912 0.93341 1.00183 1.21470 0.98366 0.98363 0.96899 1.21515 0.98555 0.97381 0.92373 1.19091 1.04903 1.01388 0.89339 1.21885 0.73973 0.79976 0.89167 1.90760 1.47881 1.52902 1.49129 1.86659 1.77238 1.27076 1.34481 1.22555 1.02473 0.93282 0.82360 1.20040 0.84199 0.89442 0.84044 1.90523 1.56234 1.63985 1.39672 1.41725 1.57769 1.07793 1.12013 1.19738 1.44758 0.82517 0.99878 0.89754 1.26151 0.95424 1.05308 0.94004 1.69674 1.44098 1.37911 1.03777 0.84841 0.78527 0.76070 0.78383 1.19382 1.19310 1.19499 0.90059 0.91383 0.93787 0.91576 0.90453 0.94109 0.91563 0.82162 0.81475 0.82600 0.85714 0.87607 0.87523 0.76548 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.94 71.98 0.64 -1.80 16 2 C -0.08 -1.89 2.65 -11.54 -0.03 -1.92 16 3 C -0.13 -2.39 9.06 71.98 0.65 -1.74 16 4 C -0.03 -0.64 4.81 -19.60 -0.09 -0.73 16 5 C -0.12 -1.98 8.76 22.23 0.19 -1.79 16 6 C -0.08 -1.03 10.04 22.33 0.22 -0.81 16 7 C -0.13 -2.36 10.03 22.23 0.22 -2.14 16 8 C -0.08 -2.05 9.66 22.54 0.22 -1.83 16 9 C -0.15 -4.28 5.81 -20.10 -0.12 -4.39 16 10 C 0.50 17.92 7.03 70.33 0.49 18.41 16 11 O -0.52 -19.09 14.25 19.93 0.28 -18.81 16 12 O -0.34 -13.79 9.61 -49.83 -0.48 -14.27 16 13 C 0.07 2.82 5.95 71.24 0.42 3.25 16 14 C 0.44 22.07 7.86 87.66 0.69 22.76 16 15 O -0.62 -36.18 16.08 15.74 0.25 -35.92 16 16 N -0.56 -29.16 5.29 -306.98 -1.62 -30.78 16 17 C -0.34 -19.37 9.68 84.04 0.81 -18.56 16 18 H 0.08 5.09 7.16 -2.91 -0.02 5.07 16 19 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 20 N -0.91 -49.00 13.05 21.67 0.28 -48.72 16 21 Si 1.00 42.35 29.55 68.60 2.03 44.37 16 22 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 23 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 25 H 0.08 1.00 7.07 -2.39 -0.02 0.98 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.07 1.95 5.10 -2.39 -0.01 1.94 16 29 H 0.08 1.04 7.78 -2.39 -0.02 1.02 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.16 1.55 7.10 -2.91 -0.02 1.53 16 33 H 0.17 1.00 8.06 -2.91 -0.02 0.97 16 34 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 35 H 0.12 3.40 8.06 -2.91 -0.02 3.38 16 36 H 0.11 3.82 8.14 -2.38 -0.02 3.80 16 37 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 38 H 0.40 19.76 7.90 -92.71 -0.73 19.03 16 39 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -71.86 338.37 5.89 -65.97 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 0.34 Total: 29.42 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 4.80 Total: 8.74 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -1.34 Total: -79.50 kcal Atomic # 8 Polarization: -69.06 SS G_CDS: 0.06 Total: -69.00 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Total: -71.86 5.89 -65.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333240430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.599 kcal (2) G-P(sol) polarization free energy of solvation -71.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds