Wall clock time and date at job start Tue Mar 31 2020 06:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.06575 * 2 1 4 4 C 1.50975 * 109.11486 * 119.11932 * 2 1 3 5 5 C 1.54037 * 109.03786 * 215.60195 * 4 2 1 6 6 N 1.38715 * 112.88820 * 276.20398 * 5 4 2 7 7 C 1.46900 * 111.00300 * 193.22179 * 6 5 4 8 8 C 1.52994 * 109.47449 * 163.76874 * 7 6 5 9 9 H 1.09011 * 109.47098 * 58.59172 * 8 7 6 10 10 O 1.42903 * 109.47172 * 298.59618 * 8 7 6 11 11 C 1.50696 * 109.47401 * 178.59002 * 8 7 6 12 12 H 1.07999 * 120.00287 * 0.02562 * 11 8 7 13 13 C 1.37881 * 120.00000 * 179.72390 * 11 8 7 14 14 N 1.31517 * 119.99763 * 180.02562 * 13 11 8 15 15 Si 1.86798 * 120.00107 * 0.02562 * 13 11 8 16 16 H 1.48497 * 109.47024 * 90.00082 * 15 13 11 17 17 H 1.48506 * 109.47055 * 209.99900 * 15 13 11 18 18 H 1.48501 * 109.47057 * 329.99837 * 15 13 11 19 19 C 1.47513 * 115.28884 * 65.92632 * 6 5 4 20 20 C 1.51104 * 107.76048 * 271.18443 * 19 6 5 21 21 S 1.82107 * 110.65260 * 97.22836 * 20 19 6 22 22 O 1.42095 * 108.30784 * 204.65295 * 21 20 19 23 23 O 1.42102 * 108.26845 * 74.35446 * 21 20 19 24 24 H 1.09004 * 109.46847 * 300.88561 * 1 2 3 25 25 H 1.08999 * 109.46687 * 60.88557 * 1 2 3 26 26 H 1.08998 * 109.47203 * 180.88334 * 1 2 3 27 27 H 1.08994 * 109.47110 * 168.05119 * 3 2 1 28 28 H 1.08994 * 109.47114 * 288.06048 * 3 2 1 29 29 H 1.09005 * 109.46674 * 48.05803 * 3 2 1 30 30 H 1.09001 * 109.54394 * 95.73764 * 4 2 1 31 31 H 1.08999 * 109.54333 * 335.46744 * 4 2 1 32 32 H 1.09003 * 108.79683 * 155.32923 * 5 4 2 33 33 H 1.09001 * 108.70926 * 37.02239 * 5 4 2 34 34 H 1.09001 * 109.47058 * 43.77066 * 7 6 5 35 35 H 1.09001 * 109.46877 * 283.77382 * 7 6 5 36 36 H 0.96702 * 113.99583 * 299.99481 * 10 8 7 37 37 H 0.97002 * 119.99946 * 180.02562 * 14 13 11 38 38 H 1.09000 * 109.80582 * 30.75366 * 19 6 5 39 39 H 1.09002 * 109.80165 * 151.62058 * 19 6 5 40 40 H 1.08997 * 109.23701 * 336.92905 * 20 19 6 41 41 H 1.08996 * 109.21021 * 217.51104 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0298 1.4460 0.0000 4 6 2.0244 -0.6942 1.2462 5 6 3.3076 0.0040 1.7348 6 7 4.4477 -0.4473 1.0862 7 6 5.6615 0.0003 1.7822 8 6 6.8578 -0.8240 1.3025 9 1 6.9693 -0.7091 0.2242 10 8 6.6430 -2.2018 1.6150 11 6 8.1086 -0.3418 1.9910 12 1 8.0555 0.4710 2.7002 13 6 9.3198 -0.9423 1.7202 14 7 10.4113 -0.5218 2.3215 15 14 9.4105 -2.3533 0.4994 16 1 9.6550 -1.8144 -0.8626 17 1 10.5203 -3.2646 0.8777 18 1 8.1284 -3.1025 0.5127 19 6 4.5187 -0.1352 -0.3538 20 6 3.8518 -1.2649 -1.1037 21 16 2.1276 -0.8389 -1.5063 22 8 1.3951 -2.0461 -1.6653 23 8 2.1384 0.1051 -2.5684 24 1 -0.3633 0.5276 0.8820 25 1 -0.3633 0.5000 -0.8978 26 1 -0.3633 -1.0275 0.0158 27 1 3.0987 1.4610 0.2128 28 1 1.8474 1.8935 -0.9770 29 1 1.4992 2.0137 0.7645 30 1 2.2409 -1.7384 1.0205 31 1 1.2609 -0.6382 2.0221 32 1 3.4186 -0.1736 2.8045 33 1 3.2084 1.0762 1.5656 34 1 5.5348 -0.1344 2.8565 35 1 5.8363 1.0543 1.5664 36 1 6.5351 -2.3786 2.5595 37 1 11.2635 -0.9441 2.1307 38 1 3.9970 0.8004 -0.5551 39 1 5.5607 -0.0515 -0.6626 40 1 3.8651 -2.1630 -0.4862 41 1 4.3996 -1.4553 -2.0266 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334208559.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:04 Heat of formation + Delta-G solvation = -76.266399 kcal Electronic energy + Delta-G solvation = -23393.123152 eV Core-core repulsion = 20016.270889 eV Total energy + Delta-G solvation = -3376.852263 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.00485 -37.05689 -36.71093 -36.07401 -35.05085 -32.28477 -31.81436 -30.04248 -28.02886 -27.82942 -24.73057 -23.97046 -22.43711 -20.51738 -20.14208 -18.39920 -17.57260 -17.13090 -16.85146 -16.13119 -15.45794 -15.10412 -14.97292 -14.83417 -14.32771 -14.16401 -13.73106 -13.51290 -13.18735 -12.91501 -12.83596 -12.62513 -12.60763 -12.12967 -12.05369 -11.85510 -11.77824 -11.66121 -11.41264 -11.35985 -10.99557 -10.96979 -10.81334 -10.41773 -10.36154 -10.00353 -9.89617 -9.08027 -8.67761 -8.33479 -7.80268 -6.18778 -4.30886 -0.06018 2.62925 3.34847 3.45633 3.54954 3.71854 3.79338 4.08176 4.23972 4.34519 4.48792 4.64752 4.77838 4.85762 4.99008 5.09669 5.16068 5.17856 5.26804 5.28194 5.40004 5.46124 5.58761 5.68611 5.72109 5.74780 5.82312 5.91433 5.98941 6.00649 6.03317 6.20479 6.47414 7.15136 7.23811 7.56198 7.65671 8.22567 8.77172 9.03893 9.46028 10.91729 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.028122 B = 0.004942 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.430662 B = 5664.418772 C = 6093.922556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.523 4.523 3 C -0.165 4.165 4 C -0.095 4.095 5 C 0.050 3.950 6 N -0.554 5.554 7 C 0.047 3.953 8 C 0.199 3.801 9 H 0.054 0.946 10 O -0.570 6.570 11 C -0.569 4.569 12 H 0.071 0.929 13 C 0.085 3.915 14 N -0.892 5.892 15 Si 0.869 3.131 16 H -0.288 1.288 17 H -0.296 1.296 18 H -0.214 1.214 19 C 0.061 3.939 20 C -0.586 4.586 21 S 2.396 3.604 22 O -0.945 6.945 23 O -0.944 6.944 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.039 0.961 36 H 0.354 0.646 37 H 0.265 0.735 38 H 0.064 0.936 39 H 0.103 0.897 40 H 0.153 0.847 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.213 1.928 -2.767 18.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.614 4.614 3 C -0.222 4.222 4 C -0.134 4.134 5 C -0.080 4.080 6 N -0.278 5.278 7 C -0.079 4.079 8 C 0.141 3.859 9 H 0.071 0.929 10 O -0.375 6.375 11 C -0.607 4.607 12 H 0.089 0.911 13 C -0.120 4.120 14 N -0.529 5.529 15 Si 0.695 3.305 16 H -0.215 1.215 17 H -0.223 1.223 18 H -0.136 1.136 19 C -0.067 4.067 20 C -0.717 4.717 21 S 2.579 3.421 22 O -0.942 6.942 23 O -0.941 6.941 24 H 0.098 0.902 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.115 0.885 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.200 0.800 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.121 0.879 40 H 0.171 0.829 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.508 1.223 -4.140 19.005 hybrid contribution 0.684 0.414 0.668 1.041 sum -17.825 1.637 -3.472 18.233 Atomic orbital electron populations 1.21756 0.89600 1.03880 1.03810 1.29434 1.06088 1.08405 1.17441 1.22563 1.03506 0.91815 1.04335 1.21405 0.97803 0.99421 0.94790 1.21049 0.89468 0.97984 0.99449 1.58141 1.03188 1.64955 1.01478 1.22857 0.89078 0.98005 0.98005 1.19776 0.90561 0.79405 0.96111 0.92886 1.86674 1.94827 1.27850 1.28182 1.21496 0.91225 1.20423 1.27519 0.91078 1.24979 0.95170 0.96585 0.95234 1.69955 0.99135 1.41646 1.42183 0.87065 0.79837 0.83302 0.80290 1.21495 1.22272 1.13623 1.21832 1.03492 0.93427 0.87939 1.30093 1.20348 1.10508 1.10798 1.09113 0.79095 0.76037 0.77808 1.93543 1.70160 1.45280 1.85215 1.93543 1.86683 1.63438 1.50470 0.90202 0.91763 0.90547 0.88497 0.90545 0.90343 0.90106 0.89376 0.90263 0.93876 0.90857 0.94318 0.80033 0.92531 0.91833 0.87930 0.82882 0.84784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.12 7.96 37.16 0.30 -0.82 16 2 C -0.52 -5.10 0.80 -91.64 -0.07 -5.17 16 3 C -0.17 -1.50 6.45 37.15 0.24 -1.26 16 4 C -0.10 -0.91 5.04 -27.21 -0.14 -1.04 16 5 C 0.05 0.55 4.76 -7.47 -0.04 0.51 16 6 N -0.55 -7.62 3.68 -240.97 -0.89 -8.51 16 7 C 0.05 0.79 4.49 -3.83 -0.02 0.77 16 8 C 0.20 4.23 2.26 -27.89 -0.06 4.16 16 9 H 0.05 1.16 5.76 -51.92 -0.30 0.86 16 10 O -0.57 -12.01 10.00 -35.23 -0.35 -12.36 16 11 C -0.57 -14.86 9.34 -34.44 -0.32 -15.18 16 12 H 0.07 2.01 7.99 -52.49 -0.42 1.59 16 13 C 0.09 2.36 5.47 -17.82 -0.10 2.26 16 14 N -0.89 -26.48 13.96 55.43 0.77 -25.70 16 15 Si 0.87 21.12 26.99 -169.99 -4.59 16.53 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 18 H -0.21 -5.06 5.29 56.52 0.30 -4.76 16 19 C 0.06 0.80 5.11 -4.44 -0.02 0.78 16 20 C -0.59 -7.23 5.75 36.20 0.21 -7.02 16 21 S 2.40 29.80 4.29 -107.50 -0.46 29.34 16 22 O -0.94 -14.34 17.64 -57.87 -1.02 -15.36 16 23 O -0.94 -14.06 16.96 -57.87 -0.98 -15.04 16 24 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.65 7.94 -51.93 -0.41 0.24 16 27 H 0.10 0.92 2.73 -51.93 -0.14 0.78 16 28 H 0.08 0.72 7.24 -51.93 -0.38 0.34 16 29 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 30 H 0.08 0.81 7.13 -51.93 -0.37 0.44 16 31 H 0.09 0.68 7.68 -51.93 -0.40 0.28 16 32 H 0.08 0.85 7.58 -51.93 -0.39 0.46 16 33 H 0.04 0.44 4.70 -51.93 -0.24 0.19 16 34 H 0.07 1.21 7.62 -51.93 -0.40 0.81 16 35 H 0.04 0.65 8.12 -51.93 -0.42 0.23 16 36 H 0.35 6.67 9.04 45.56 0.41 7.08 16 37 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.06 0.71 4.01 -51.93 -0.21 0.50 16 39 H 0.10 1.49 5.91 -51.93 -0.31 1.19 16 40 H 0.15 1.93 7.49 -51.93 -0.39 1.54 16 41 H 0.13 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 312.17 15.07 4.70 4.70 Total: -1.00 -33.49 312.17 -8.12 -41.62 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -5.29 Total: 6.80 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: -0.02 Total: -22.02 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: -0.11 Total: -34.21 kcal Atomic # 8 Polarization: -40.41 SS G_CDS: -2.35 Total: -42.76 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.59 Total: 16.53 kcal Atomic # 16 Polarization: 29.80 SS G_CDS: -0.46 Total: 29.34 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.49 -8.12 -41.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334208559.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.651 kcal (2) G-P(sol) polarization free energy of solvation -33.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds