Wall clock time and date at job start Tue Mar 31 2020 06:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.06575 * 2 1 4 4 C 1.50975 * 109.11486 * 119.11932 * 2 1 3 5 5 C 1.54037 * 109.03786 * 215.60195 * 4 2 1 6 6 N 1.38715 * 112.88820 * 276.20398 * 5 4 2 7 7 C 1.46900 * 111.00300 * 193.22179 * 6 5 4 8 8 C 1.52994 * 109.47449 * 163.76874 * 7 6 5 9 9 H 1.09011 * 109.47098 * 58.59172 * 8 7 6 10 10 O 1.42903 * 109.47172 * 298.59618 * 8 7 6 11 11 C 1.50696 * 109.47401 * 178.59002 * 8 7 6 12 12 H 1.07999 * 120.00287 * 0.02562 * 11 8 7 13 13 C 1.37881 * 120.00000 * 179.72390 * 11 8 7 14 14 N 1.31517 * 119.99763 * 180.02562 * 13 11 8 15 15 Si 1.86798 * 120.00107 * 0.02562 * 13 11 8 16 16 H 1.48497 * 109.47024 * 90.00082 * 15 13 11 17 17 H 1.48506 * 109.47055 * 209.99900 * 15 13 11 18 18 H 1.48501 * 109.47057 * 329.99837 * 15 13 11 19 19 C 1.47513 * 115.28884 * 65.92632 * 6 5 4 20 20 C 1.51104 * 107.76048 * 271.18443 * 19 6 5 21 21 S 1.82107 * 110.65260 * 97.22836 * 20 19 6 22 22 O 1.42095 * 108.30784 * 204.65295 * 21 20 19 23 23 O 1.42102 * 108.26845 * 74.35446 * 21 20 19 24 24 H 1.09004 * 109.46847 * 300.88561 * 1 2 3 25 25 H 1.08999 * 109.46687 * 60.88557 * 1 2 3 26 26 H 1.08998 * 109.47203 * 180.88334 * 1 2 3 27 27 H 1.08994 * 109.47110 * 168.05119 * 3 2 1 28 28 H 1.08994 * 109.47114 * 288.06048 * 3 2 1 29 29 H 1.09005 * 109.46674 * 48.05803 * 3 2 1 30 30 H 1.09001 * 109.54394 * 95.73764 * 4 2 1 31 31 H 1.08999 * 109.54333 * 335.46744 * 4 2 1 32 32 H 1.09003 * 108.79683 * 155.32923 * 5 4 2 33 33 H 1.09001 * 108.70926 * 37.02239 * 5 4 2 34 34 H 1.09001 * 109.47058 * 43.77066 * 7 6 5 35 35 H 1.09001 * 109.46877 * 283.77382 * 7 6 5 36 36 H 0.96702 * 113.99583 * 299.99481 * 10 8 7 37 37 H 0.97002 * 119.99946 * 180.02562 * 14 13 11 38 38 H 1.09000 * 109.80582 * 30.75366 * 19 6 5 39 39 H 1.09002 * 109.80165 * 151.62058 * 19 6 5 40 40 H 1.08997 * 109.23701 * 336.92905 * 20 19 6 41 41 H 1.08996 * 109.21021 * 217.51104 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0298 1.4460 0.0000 4 6 2.0244 -0.6942 1.2462 5 6 3.3076 0.0040 1.7348 6 7 4.4477 -0.4473 1.0862 7 6 5.6615 0.0003 1.7822 8 6 6.8578 -0.8240 1.3025 9 1 6.9693 -0.7091 0.2242 10 8 6.6430 -2.2018 1.6150 11 6 8.1086 -0.3418 1.9910 12 1 8.0555 0.4710 2.7002 13 6 9.3198 -0.9423 1.7202 14 7 10.4113 -0.5218 2.3215 15 14 9.4105 -2.3533 0.4994 16 1 9.6550 -1.8144 -0.8626 17 1 10.5203 -3.2646 0.8777 18 1 8.1284 -3.1025 0.5127 19 6 4.5187 -0.1352 -0.3538 20 6 3.8518 -1.2649 -1.1037 21 16 2.1276 -0.8389 -1.5063 22 8 1.3951 -2.0461 -1.6653 23 8 2.1384 0.1051 -2.5684 24 1 -0.3633 0.5276 0.8820 25 1 -0.3633 0.5000 -0.8978 26 1 -0.3633 -1.0275 0.0158 27 1 3.0987 1.4610 0.2128 28 1 1.8474 1.8935 -0.9770 29 1 1.4992 2.0137 0.7645 30 1 2.2409 -1.7384 1.0205 31 1 1.2609 -0.6382 2.0221 32 1 3.4186 -0.1736 2.8045 33 1 3.2084 1.0762 1.5656 34 1 5.5348 -0.1344 2.8565 35 1 5.8363 1.0543 1.5664 36 1 6.5351 -2.3786 2.5595 37 1 11.2635 -0.9441 2.1307 38 1 3.9970 0.8004 -0.5551 39 1 5.5607 -0.0515 -0.6626 40 1 3.8651 -2.1630 -0.4862 41 1 4.3996 -1.4553 -2.0266 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334208559.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:04 Heat of formation + Delta-G solvation = -104.192204 kcal Electronic energy + Delta-G solvation = -23394.334106 eV Core-core repulsion = 20016.270889 eV Total energy + Delta-G solvation = -3378.063217 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.98512 -38.11979 -38.06640 -37.14949 -36.27185 -34.36358 -32.84922 -31.25179 -29.26978 -28.69467 -26.29751 -24.89207 -23.51184 -21.98492 -21.17730 -19.44897 -19.29513 -18.03988 -17.85711 -17.15598 -16.81402 -16.64929 -16.30497 -16.05795 -15.62452 -15.50059 -14.80835 -14.67154 -14.43544 -14.06206 -13.89967 -13.62577 -13.48751 -13.42586 -13.15604 -13.09760 -12.93706 -12.86840 -12.63271 -12.53425 -12.39477 -12.18636 -11.89867 -11.76289 -11.58541 -11.37317 -10.97927 -10.80019 -10.76923 -10.05706 -8.88579 -8.33154 -6.46530 -1.01221 1.40093 1.47466 1.69747 1.77049 2.45150 2.61166 2.80570 3.05833 3.08905 3.44617 3.50579 3.78268 3.91739 3.92746 3.99784 4.17151 4.24556 4.40937 4.48258 4.54863 4.61367 4.63038 4.66164 4.75425 4.84859 4.90258 4.99678 5.04403 5.09044 5.14703 5.18794 5.31044 5.50765 5.57037 6.08617 6.14678 6.61784 6.67671 7.27693 7.44560 8.80937 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.028122 B = 0.004942 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.430662 B = 5664.418772 C = 6093.922556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.500 4.500 3 C -0.169 4.169 4 C -0.093 4.093 5 C 0.041 3.959 6 N -0.555 5.555 7 C 0.060 3.940 8 C 0.203 3.797 9 H 0.050 0.950 10 O -0.574 6.574 11 C -0.563 4.563 12 H 0.040 0.960 13 C 0.030 3.970 14 N -0.941 5.941 15 Si 0.931 3.069 16 H -0.288 1.288 17 H -0.303 1.303 18 H -0.200 1.200 19 C 0.053 3.947 20 C -0.586 4.586 21 S 2.394 3.606 22 O -0.978 6.978 23 O -0.975 6.975 24 H 0.108 0.892 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.365 0.635 37 H 0.265 0.735 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.151 0.849 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.550 1.974 -2.415 20.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.594 4.594 3 C -0.226 4.226 4 C -0.132 4.132 5 C -0.088 4.088 6 N -0.279 5.279 7 C -0.067 4.067 8 C 0.145 3.855 9 H 0.068 0.932 10 O -0.380 6.380 11 C -0.601 4.601 12 H 0.058 0.942 13 C -0.169 4.169 14 N -0.581 5.581 15 Si 0.756 3.244 16 H -0.215 1.215 17 H -0.230 1.230 18 H -0.122 1.122 19 C -0.074 4.074 20 C -0.717 4.717 21 S 2.581 3.419 22 O -0.975 6.975 23 O -0.972 6.972 24 H 0.126 0.874 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.110 0.890 28 H 0.091 0.909 29 H 0.122 0.878 30 H 0.094 0.906 31 H 0.135 0.865 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.212 0.788 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.169 0.831 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -20.867 1.250 -3.821 21.251 hybrid contribution 1.360 0.475 0.640 1.576 sum -19.507 1.725 -3.181 19.840 Atomic orbital electron populations 1.21895 0.88172 1.04369 1.05265 1.29219 1.07078 1.08221 1.14842 1.22621 1.03456 0.91330 1.05143 1.21457 0.97733 0.98799 0.95170 1.21212 0.88766 0.99167 0.99615 1.58040 1.02924 1.65342 1.01549 1.22496 0.88930 0.96927 0.98380 1.19623 0.90411 0.80047 0.95403 0.93239 1.86604 1.94730 1.27358 1.29279 1.21903 0.93197 1.18822 1.26187 0.94190 1.25789 0.95072 0.99090 0.96997 1.70084 0.99828 1.43624 1.44553 0.86120 0.79886 0.80472 0.77951 1.21527 1.22995 1.12197 1.21923 1.02941 0.94790 0.87747 1.30055 1.20510 1.10172 1.11001 1.09043 0.78699 0.75353 0.78766 1.93497 1.70716 1.46914 1.86357 1.93500 1.86956 1.63747 1.52965 0.87380 0.91683 0.90693 0.88961 0.90857 0.87754 0.90629 0.86466 0.89566 0.92235 0.90338 0.94497 0.78764 0.92644 0.89743 0.89571 0.83101 0.84168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 7.96 71.98 0.57 -1.29 16 2 C -0.50 -8.19 0.80 -11.45 -0.01 -8.20 16 3 C -0.17 -2.47 6.45 71.98 0.46 -2.01 16 4 C -0.09 -1.42 5.04 30.29 0.15 -1.27 16 5 C 0.04 0.76 4.76 88.12 0.42 1.18 16 6 N -0.55 -13.96 3.68 -916.28 -3.37 -17.33 16 7 C 0.06 1.90 4.49 86.30 0.39 2.29 16 8 C 0.20 8.40 2.26 29.84 0.07 8.47 16 9 H 0.05 2.12 5.76 -2.38 -0.01 2.10 16 10 O -0.57 -23.03 10.00 -148.98 -1.49 -24.52 16 11 C -0.56 -29.55 9.34 25.60 0.24 -29.31 16 12 H 0.04 2.30 7.99 -2.91 -0.02 2.28 16 13 C 0.03 1.68 5.47 84.66 0.46 2.14 16 14 N -0.94 -57.06 13.96 21.45 0.30 -56.76 16 15 Si 0.93 43.86 26.99 68.60 1.85 45.71 16 16 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 17 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 18 H -0.20 -8.92 5.29 99.48 0.53 -8.39 16 19 C 0.05 1.32 5.11 85.57 0.44 1.76 16 20 C -0.59 -13.77 5.75 71.36 0.41 -13.36 16 21 S 2.39 56.69 4.29 -56.49 -0.24 56.45 16 22 O -0.98 -29.04 17.64 -127.34 -2.25 -31.28 16 23 O -0.97 -28.34 16.96 -127.34 -2.16 -30.50 16 24 H 0.11 0.90 8.09 -2.39 -0.02 0.88 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.07 1.06 7.94 -2.39 -0.02 1.04 16 27 H 0.09 1.45 2.73 -2.39 -0.01 1.44 16 28 H 0.07 1.18 7.24 -2.39 -0.02 1.16 16 29 H 0.10 1.06 8.07 -2.38 -0.02 1.05 16 30 H 0.08 1.30 7.13 -2.39 -0.02 1.28 16 31 H 0.12 1.22 7.68 -2.39 -0.02 1.20 16 32 H 0.09 1.53 7.58 -2.39 -0.02 1.51 16 33 H 0.06 0.95 4.70 -2.39 -0.01 0.94 16 34 H 0.08 2.42 7.62 -2.39 -0.02 2.41 16 35 H 0.04 1.19 8.12 -2.39 -0.02 1.17 16 36 H 0.37 13.02 9.04 -74.06 -0.67 12.36 16 37 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 38 H 0.09 1.72 4.01 -2.39 -0.01 1.71 16 39 H 0.09 2.43 5.91 -2.39 -0.01 2.41 16 40 H 0.15 3.62 7.49 -2.39 -0.02 3.60 16 41 H 0.14 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -72.39 312.17 -3.55 -75.95 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 0.20 Total: 21.89 kcal Atomic # 6 Polarization: -43.21 SS G_CDS: 3.61 Total: -39.61 kcal Atomic # 7 Polarization: -71.02 SS G_CDS: -3.07 Total: -74.09 kcal Atomic # 8 Polarization: -80.41 SS G_CDS: -5.90 Total: -86.30 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.85 Total: 45.71 kcal Atomic # 16 Polarization: 56.69 SS G_CDS: -0.24 Total: 56.45 kcal Total: -72.39 -3.55 -75.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334208559.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.245 kcal (2) G-P(sol) polarization free energy of solvation -72.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds