Wall clock time and date at job start Tue Mar 31 2020 06:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47288 * 28.88399 * 3 2 1 5 5 C 1.36938 * 119.99947 * 264.43776 * 4 3 2 6 6 H 1.07997 * 120.00163 * 196.56574 * 5 4 3 7 7 C 1.38813 * 119.99928 * 16.56377 * 5 4 3 8 8 N 1.31619 * 119.99897 * 22.45672 * 7 5 4 9 9 Si 1.86802 * 119.99921 * 202.45642 * 7 5 4 10 10 H 1.48499 * 109.47063 * 60.00464 * 9 7 5 11 11 H 1.48503 * 109.47083 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47096 * 299.99917 * 9 7 5 13 13 C 1.46500 * 120.00071 * 84.43905 * 4 3 2 14 14 C 1.50697 * 109.47208 * 269.99843 * 13 4 3 15 15 C 1.34156 * 125.42648 * 89.99956 * 14 13 4 16 16 C 1.47061 * 105.94876 * 180.02562 * 15 14 13 17 17 C 1.47228 * 127.20056 * 179.97438 * 16 15 14 18 18 O 1.21539 * 120.00071 * 180.02562 * 17 16 15 19 19 O 1.34773 * 120.00440 * 0.03338 * 17 16 15 20 20 C 1.45189 * 117.00635 * 179.97438 * 19 17 16 21 21 C 1.36494 * 105.59881 * 0.02562 * 16 15 14 22 22 C 1.50695 * 125.81223 * 180.02562 * 21 16 15 23 23 C 1.52993 * 109.47497 * 89.99411 * 22 21 16 24 24 O 1.33631 * 108.38243 * 359.97438 * 21 16 15 25 25 H 4.40634 * 5.51377 * 180.02562 * 4 1 2 26 26 H 1.09000 * 109.47182 * 268.87860 * 3 2 1 27 27 H 1.09003 * 109.46845 * 148.88496 * 3 2 1 28 28 H 0.97000 * 119.99943 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.46880 * 149.99524 * 13 4 3 30 30 H 1.08999 * 109.47077 * 30.00063 * 13 4 3 31 31 H 1.08004 * 127.02343 * 359.76099 * 15 14 13 32 32 H 1.09005 * 109.47215 * 299.99641 * 20 19 17 33 33 H 1.08999 * 109.47435 * 59.99512 * 20 19 17 34 34 H 1.09001 * 109.47770 * 179.97438 * 20 19 17 35 35 H 1.08999 * 109.47482 * 209.99984 * 22 21 16 36 36 H 1.09006 * 109.46761 * 329.99318 * 22 21 16 37 37 H 1.08999 * 109.47222 * 300.00732 * 23 22 21 38 38 H 1.09006 * 109.47191 * 60.00171 * 23 22 21 39 39 H 1.08996 * 109.47861 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2085 -0.6672 5 6 3.4721 -2.3101 0.0730 6 1 4.0732 -3.0925 -0.3661 7 6 3.0411 -2.4213 1.3879 8 7 1.9872 -1.7457 1.7943 9 14 3.9570 -3.5297 2.5804 10 1 5.3641 -3.0707 2.7017 11 1 3.3011 -3.4737 3.9116 12 1 3.9334 -4.9261 2.0760 13 6 3.2632 -1.2391 -2.1262 14 6 1.9743 -1.7294 -2.7337 15 6 0.9431 -0.9538 -3.1009 16 6 -0.0789 -1.8665 -3.6351 17 6 -1.4023 -1.5058 -4.1700 18 8 -2.1489 -2.3728 -4.5801 19 8 -1.7859 -0.2143 -4.2052 20 6 -3.1034 0.0677 -4.7462 21 6 0.4557 -3.1180 -3.5301 22 6 -0.2141 -4.4010 -3.9499 23 6 0.1299 -4.7019 -5.4099 24 8 1.6746 -3.0118 -2.9927 25 1 -1.0497 -0.0003 -0.0004 26 1 3.0094 0.0209 1.0275 27 1 3.0089 0.8807 -0.5311 28 1 1.6858 -1.8236 2.7130 29 1 4.0752 -1.9105 -2.4055 30 1 3.4792 -0.2356 -2.4931 31 1 0.8754 0.1208 -3.0169 32 1 -3.1549 -0.2813 -5.7776 33 1 -3.8582 -0.4459 -4.1508 34 1 -3.2864 1.1418 -4.7161 35 1 0.1363 -5.2173 -3.3183 36 1 -1.2942 -4.2982 -3.8448 37 1 -0.2205 -3.8855 -6.0415 38 1 1.2100 -4.8046 -5.5151 39 1 -0.3549 -5.6296 -5.7138 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335119014.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:13 Heat of formation + Delta-G solvation = 8.305942 kcal Electronic energy + Delta-G solvation = -23594.150675 eV Core-core repulsion = 20085.521793 eV Total energy + Delta-G solvation = -3508.628882 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.01303 -39.85358 -36.37202 -36.15930 -33.80851 -32.49253 -31.55149 -31.44887 -29.07262 -27.70269 -26.25524 -25.58997 -23.97747 -22.53299 -21.39241 -20.87576 -19.07665 -17.50250 -17.29806 -16.54021 -16.35208 -16.17429 -15.57489 -15.33772 -14.95266 -14.25616 -13.96795 -13.74128 -13.56449 -13.21264 -13.11244 -12.83291 -12.56955 -12.21995 -12.11585 -11.89105 -11.55971 -11.46557 -11.35473 -11.05873 -10.81755 -10.71555 -10.64735 -10.36124 -10.25342 -10.02969 -9.32095 -8.94478 -8.85190 -8.47776 -7.83437 -7.19502 -5.89194 -3.31003 1.55660 2.62807 2.88703 3.31854 3.38553 3.40358 3.41840 3.47802 4.19550 4.39837 4.50157 4.86219 5.06517 5.13504 5.19463 5.20705 5.29652 5.34764 5.42677 5.53750 5.57467 5.62148 5.83318 5.90829 5.94693 5.99174 6.14690 6.23715 6.26781 6.37680 6.52973 6.59967 6.64847 6.98384 7.15072 7.41211 7.67508 7.72478 8.02785 8.14913 8.98526 9.21854 9.62294 10.06456 11.13221 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.017433 B = 0.005325 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.749784 B = 5256.871442 C = 6009.594180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.101 4.101 3 C 0.265 3.735 4 N -0.568 5.568 5 C -0.273 4.273 6 H 0.080 0.920 7 C 0.009 3.991 8 N -0.881 5.881 9 Si 0.905 3.095 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.283 1.283 13 C 0.211 3.789 14 C 0.003 3.997 15 C -0.178 4.178 16 C -0.236 4.236 17 C 0.546 3.454 18 O -0.523 6.523 19 O -0.350 6.350 20 C 0.038 3.962 21 C 0.078 3.922 22 C -0.053 4.053 23 C -0.140 4.140 24 O -0.158 6.158 25 H 0.186 0.814 26 H 0.099 0.901 27 H 0.041 0.959 28 H 0.257 0.743 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.149 0.851 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.677 2.202 -11.773 12.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 C -0.104 4.104 3 C 0.140 3.860 4 N -0.285 5.285 5 C -0.401 4.401 6 H 0.097 0.903 7 C -0.192 4.192 8 N -0.523 5.523 9 Si 0.734 3.266 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.209 1.209 13 C 0.082 3.918 14 C -0.049 4.049 15 C -0.198 4.198 16 C -0.239 4.239 17 C 0.394 3.606 18 O -0.414 6.414 19 O -0.267 6.267 20 C -0.056 4.056 21 C 0.024 3.976 22 C -0.090 4.090 23 C -0.198 4.198 24 O -0.053 6.053 25 H 0.203 0.797 26 H 0.117 0.883 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.167 0.833 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.123 0.877 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.723 1.748 -11.610 12.317 hybrid contribution -0.700 -0.558 0.824 1.217 sum -4.423 1.190 -10.786 11.718 Atomic orbital electron populations 1.24069 0.95212 1.05324 1.06017 1.24036 0.95080 0.95744 0.95545 1.17940 0.83062 0.86221 0.98734 1.44600 1.72835 1.12308 0.98773 1.19252 1.26819 1.00559 0.93512 0.90266 1.24985 0.96123 0.99108 0.98958 1.70151 1.20992 1.44143 1.16967 0.86338 0.79648 0.80320 0.80322 1.20722 1.21650 1.20868 1.19904 0.88863 0.98738 0.84283 1.24670 1.02023 0.79102 0.99117 1.22321 0.92343 0.99774 1.05383 1.19982 0.94887 0.93983 1.15011 1.20116 0.85755 0.80307 0.74437 1.90767 1.54642 1.49723 1.46279 1.86616 1.35695 1.28298 1.76050 1.23204 0.81640 1.02018 0.98748 1.22615 0.84488 0.95569 0.94972 1.20317 1.00632 0.90740 0.97282 1.21668 1.01663 1.01800 0.94634 1.83832 1.29640 1.30693 1.61098 0.79694 0.88274 0.94116 0.93253 0.91170 0.90109 0.83323 0.92172 0.92081 0.88301 0.89885 0.87663 0.92321 0.92416 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.64 19.15 29.55 0.57 -6.07 16 2 C -0.10 -2.41 10.55 -37.12 -0.39 -2.80 16 3 C 0.27 5.98 5.45 -6.83 -0.04 5.95 16 4 N -0.57 -13.17 2.49 -177.95 -0.44 -13.61 16 5 C -0.27 -7.04 9.66 -15.06 -0.15 -7.19 16 6 H 0.08 2.02 7.90 -52.49 -0.41 1.60 16 7 C 0.01 0.23 4.85 -17.43 -0.08 0.15 16 8 N -0.88 -24.49 9.49 55.49 0.53 -23.96 16 9 Si 0.90 20.99 29.61 -169.99 -5.03 15.95 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.21 4.05 6.21 -5.19 -0.03 4.02 16 14 C 0.00 0.07 6.58 -35.75 -0.24 -0.17 16 15 C -0.18 -3.46 10.07 -37.44 -0.38 -3.84 16 16 C -0.24 -4.53 6.32 -103.30 -0.65 -5.19 16 17 C 0.55 9.84 7.95 34.38 0.27 10.11 16 18 O -0.52 -9.57 14.64 -19.30 -0.28 -9.85 16 19 O -0.35 -5.64 10.48 -40.69 -0.43 -6.07 16 20 C 0.04 0.43 10.57 101.05 1.07 1.50 16 21 C 0.08 1.46 6.63 -34.94 -0.23 1.23 16 22 C -0.05 -0.81 5.94 -27.89 -0.17 -0.97 16 23 C -0.14 -1.78 9.89 37.15 0.37 -1.41 16 24 O -0.16 -3.28 10.52 7.70 0.08 -3.20 16 25 H 0.19 3.80 7.80 -54.11 -0.42 3.38 16 26 H 0.10 2.44 6.42 -51.93 -0.33 2.11 16 27 H 0.04 0.78 7.97 -51.93 -0.41 0.36 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.07 1.27 8.02 -51.93 -0.42 0.85 16 30 H 0.08 1.30 7.95 -51.93 -0.41 0.89 16 31 H 0.15 2.76 8.06 -52.48 -0.42 2.33 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.11 1.65 6.49 -51.93 -0.34 1.32 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 344.29 15.07 5.19 5.19 Total: -1.00 -31.03 344.29 -5.73 -36.77 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -5.27 Total: 3.47 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -0.08 Total: -4.68 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.08 Total: -37.58 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.63 Total: -19.12 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.03 -5.73 -36.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335119014.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.073 kcal (2) G-P(sol) polarization free energy of solvation -31.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds