Wall clock time and date at job start Tue Mar 31 2020 06:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47288 * 28.88399 * 3 2 1 5 5 C 1.36938 * 119.99947 * 264.43776 * 4 3 2 6 6 H 1.07997 * 120.00163 * 196.56574 * 5 4 3 7 7 C 1.38813 * 119.99928 * 16.56377 * 5 4 3 8 8 N 1.31619 * 119.99897 * 22.45672 * 7 5 4 9 9 Si 1.86802 * 119.99921 * 202.45642 * 7 5 4 10 10 H 1.48499 * 109.47063 * 60.00464 * 9 7 5 11 11 H 1.48503 * 109.47083 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47096 * 299.99917 * 9 7 5 13 13 C 1.46500 * 120.00071 * 84.43905 * 4 3 2 14 14 C 1.50697 * 109.47208 * 269.99843 * 13 4 3 15 15 C 1.34156 * 125.42648 * 89.99956 * 14 13 4 16 16 C 1.47061 * 105.94876 * 180.02562 * 15 14 13 17 17 C 1.47228 * 127.20056 * 179.97438 * 16 15 14 18 18 O 1.21539 * 120.00071 * 180.02562 * 17 16 15 19 19 O 1.34773 * 120.00440 * 0.03338 * 17 16 15 20 20 C 1.45189 * 117.00635 * 179.97438 * 19 17 16 21 21 C 1.36494 * 105.59881 * 0.02562 * 16 15 14 22 22 C 1.50695 * 125.81223 * 180.02562 * 21 16 15 23 23 C 1.52993 * 109.47497 * 89.99411 * 22 21 16 24 24 O 1.33631 * 108.38243 * 359.97438 * 21 16 15 25 25 H 4.40634 * 5.51377 * 180.02562 * 4 1 2 26 26 H 1.09000 * 109.47182 * 268.87860 * 3 2 1 27 27 H 1.09003 * 109.46845 * 148.88496 * 3 2 1 28 28 H 0.97000 * 119.99943 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.46880 * 149.99524 * 13 4 3 30 30 H 1.08999 * 109.47077 * 30.00063 * 13 4 3 31 31 H 1.08004 * 127.02343 * 359.76099 * 15 14 13 32 32 H 1.09005 * 109.47215 * 299.99641 * 20 19 17 33 33 H 1.08999 * 109.47435 * 59.99512 * 20 19 17 34 34 H 1.09001 * 109.47770 * 179.97438 * 20 19 17 35 35 H 1.08999 * 109.47482 * 209.99984 * 22 21 16 36 36 H 1.09006 * 109.46761 * 329.99318 * 22 21 16 37 37 H 1.08999 * 109.47222 * 300.00732 * 23 22 21 38 38 H 1.09006 * 109.47191 * 60.00171 * 23 22 21 39 39 H 1.08996 * 109.47861 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2085 -0.6672 5 6 3.4721 -2.3101 0.0730 6 1 4.0732 -3.0925 -0.3661 7 6 3.0411 -2.4213 1.3879 8 7 1.9872 -1.7457 1.7943 9 14 3.9570 -3.5297 2.5804 10 1 5.3641 -3.0707 2.7017 11 1 3.3011 -3.4737 3.9116 12 1 3.9334 -4.9261 2.0760 13 6 3.2632 -1.2391 -2.1262 14 6 1.9743 -1.7294 -2.7337 15 6 0.9431 -0.9538 -3.1009 16 6 -0.0789 -1.8665 -3.6351 17 6 -1.4023 -1.5058 -4.1700 18 8 -2.1489 -2.3728 -4.5801 19 8 -1.7859 -0.2143 -4.2052 20 6 -3.1034 0.0677 -4.7462 21 6 0.4557 -3.1180 -3.5301 22 6 -0.2141 -4.4010 -3.9499 23 6 0.1299 -4.7019 -5.4099 24 8 1.6746 -3.0118 -2.9927 25 1 -1.0497 -0.0003 -0.0004 26 1 3.0094 0.0209 1.0275 27 1 3.0089 0.8807 -0.5311 28 1 1.6858 -1.8236 2.7130 29 1 4.0752 -1.9105 -2.4055 30 1 3.4792 -0.2356 -2.4931 31 1 0.8754 0.1208 -3.0169 32 1 -3.1549 -0.2813 -5.7776 33 1 -3.8582 -0.4459 -4.1508 34 1 -3.2864 1.1418 -4.7161 35 1 0.1363 -5.2173 -3.3183 36 1 -1.2942 -4.2982 -3.8448 37 1 -0.2205 -3.8855 -6.0415 38 1 1.2100 -4.8046 -5.5151 39 1 -0.3549 -5.6296 -5.7138 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335119014.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:12 Heat of formation + Delta-G solvation = -7.614578 kcal Electronic energy + Delta-G solvation = -23594.841041 eV Core-core repulsion = 20085.521793 eV Total energy + Delta-G solvation = -3509.319248 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.51564 -41.16121 -38.04007 -37.52237 -35.08052 -34.10000 -33.37264 -33.10991 -30.61157 -28.75827 -28.00535 -27.20115 -25.27273 -24.07234 -22.90800 -22.34801 -20.49077 -19.34136 -18.67083 -18.29927 -17.75356 -17.50021 -17.01261 -16.78071 -16.66934 -15.60641 -15.47628 -15.41839 -15.18750 -14.59827 -14.29894 -14.21205 -13.95778 -13.66326 -13.45055 -13.31332 -13.16247 -12.95940 -12.69525 -12.58221 -12.40597 -12.26153 -12.11159 -11.87324 -11.79965 -11.56879 -10.93233 -10.78325 -10.60953 -10.28708 -9.36980 -9.04889 -7.86604 -5.28825 0.13675 1.10959 1.49048 1.51886 1.57880 1.63364 1.99044 2.04854 2.39488 2.55427 2.64361 3.26371 3.53361 3.73096 3.85269 3.96552 4.11144 4.13266 4.26078 4.28913 4.32375 4.44479 4.48788 4.60510 4.66487 4.78306 4.84099 4.92263 4.95743 5.05669 5.08664 5.21428 5.32520 5.33589 5.48838 5.63760 5.69986 6.19602 6.26656 6.69587 7.06026 7.41224 7.76031 8.16410 9.13826 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.017433 B = 0.005325 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.749784 B = 5256.871442 C = 6009.594180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 C -0.117 4.117 3 C 0.265 3.735 4 N -0.581 5.581 5 C -0.274 4.274 6 H 0.078 0.922 7 C -0.040 4.040 8 N -0.909 5.909 9 Si 0.961 3.039 10 H -0.272 1.272 11 H -0.300 1.300 12 H -0.284 1.284 13 C 0.209 3.791 14 C -0.016 4.016 15 C -0.172 4.172 16 C -0.256 4.256 17 C 0.546 3.454 18 O -0.531 6.531 19 O -0.360 6.360 20 C 0.030 3.970 21 C 0.075 3.925 22 C -0.053 4.053 23 C -0.133 4.133 24 O -0.177 6.177 25 H 0.204 0.796 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.247 0.753 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.156 0.844 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.132 0.868 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.049 0.951 38 H 0.061 0.939 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.785 2.286 -13.105 13.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 C -0.120 4.120 3 C 0.140 3.860 4 N -0.299 5.299 5 C -0.403 4.403 6 H 0.096 0.904 7 C -0.237 4.237 8 N -0.553 5.553 9 Si 0.790 3.210 10 H -0.198 1.198 11 H -0.227 1.227 12 H -0.210 1.210 13 C 0.082 3.918 14 C -0.067 4.067 15 C -0.193 4.193 16 C -0.258 4.258 17 C 0.394 3.606 18 O -0.423 6.423 19 O -0.276 6.276 20 C -0.063 4.063 21 C 0.021 3.979 22 C -0.090 4.090 23 C -0.190 4.190 24 O -0.072 6.072 25 H 0.221 0.779 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.057 0.943 29 H 0.097 0.903 30 H 0.133 0.867 31 H 0.174 0.826 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.150 0.850 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.819 1.846 -12.979 13.654 hybrid contribution -0.730 -0.548 1.100 1.429 sum -4.549 1.298 -11.879 12.786 Atomic orbital electron populations 1.24636 0.96046 1.05194 1.05790 1.24472 0.95821 0.95932 0.95775 1.17969 0.82572 0.87426 0.98035 1.44657 1.73113 1.11730 1.00381 1.19492 1.26033 1.00819 0.93968 0.90393 1.25586 0.96925 1.00850 1.00331 1.70303 1.22452 1.46147 1.16379 0.85452 0.78843 0.78717 0.78030 1.19794 1.22680 1.21002 1.20101 0.88577 1.00947 0.82157 1.24662 1.02493 0.79205 1.00351 1.22450 0.92116 1.00133 1.04576 1.20272 0.95755 0.94251 1.15571 1.19965 0.85326 0.80993 0.74319 1.90751 1.54755 1.50114 1.46721 1.86588 1.37942 1.26964 1.76091 1.23589 0.79469 1.04242 0.99002 1.23296 0.83752 0.96959 0.93903 1.20486 0.99942 0.89466 0.99134 1.21635 1.02180 1.02712 0.92439 1.83801 1.30669 1.31064 1.61677 0.77935 0.90815 0.90417 0.94332 0.90281 0.86712 0.82601 0.91277 0.92031 0.84973 0.88967 0.88096 0.93186 0.92022 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.62 19.15 74.32 1.42 -12.20 16 2 C -0.12 -5.53 10.55 31.12 0.33 -5.20 16 3 C 0.26 11.77 5.45 84.57 0.46 12.23 16 4 N -0.58 -26.47 2.49 -716.92 -1.78 -28.25 16 5 C -0.27 -14.05 9.66 84.03 0.81 -13.24 16 6 H 0.08 3.93 7.90 -2.91 -0.02 3.91 16 7 C -0.04 -2.12 4.85 84.86 0.41 -1.71 16 8 N -0.91 -51.23 9.49 21.65 0.21 -51.03 16 9 Si 0.96 43.52 29.61 68.60 2.03 45.55 16 10 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 11 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 13 C 0.21 7.73 6.21 85.63 0.53 8.26 16 14 C -0.02 -0.62 6.58 24.75 0.16 -0.45 16 15 C -0.17 -6.54 10.07 23.65 0.24 -6.30 16 16 C -0.26 -9.65 6.32 -19.01 -0.12 -9.77 16 17 C 0.55 19.13 7.95 70.18 0.56 19.69 16 18 O -0.53 -18.87 14.64 19.71 0.29 -18.58 16 19 O -0.36 -11.03 10.48 -56.84 -0.60 -11.63 16 20 C 0.03 0.62 10.57 113.37 1.20 1.81 16 21 C 0.07 2.76 6.63 25.28 0.17 2.93 16 22 C -0.05 -1.57 5.94 29.84 0.18 -1.39 16 23 C -0.13 -3.11 9.89 71.98 0.71 -2.40 16 24 O -0.18 -7.24 10.52 4.65 0.05 -7.19 16 25 H 0.20 8.16 7.80 -4.43 -0.03 8.13 16 26 H 0.07 3.66 6.42 -2.39 -0.02 3.65 16 27 H 0.08 2.81 7.97 -2.39 -0.02 2.79 16 28 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 29 H 0.08 2.75 8.02 -2.39 -0.02 2.73 16 30 H 0.12 3.39 7.95 -2.39 -0.02 3.37 16 31 H 0.16 5.57 8.06 -2.91 -0.02 5.55 16 32 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.10 3.08 6.49 -2.38 -0.02 3.06 16 37 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -66.13 344.29 8.30 -57.83 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 1.05 Total: 21.03 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: 7.06 Total: -7.73 kcal Atomic # 7 Polarization: -77.70 SS G_CDS: -1.58 Total: -79.28 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -0.26 Total: -37.40 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -66.13 8.30 -57.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335119014.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.219 kcal (2) G-P(sol) polarization free energy of solvation -66.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds