Wall clock time and date at job start Tue Mar 31 2020 06:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46952 * 2 1 4 4 C 1.47207 * 109.46717 * 299.99539 * 3 2 1 5 5 N 3.43552 * 83.99648 * 321.44262 * 2 1 3 6 6 C 1.53004 * 109.47494 * 59.99452 * 3 2 1 7 7 C 1.52996 * 109.46913 * 60.00420 * 6 3 2 8 8 C 1.50696 * 109.47298 * 180.02562 * 3 2 1 9 9 O 1.20833 * 119.99655 * 359.97438 * 8 3 2 10 10 O 1.34222 * 120.00432 * 180.27351 * 8 3 2 11 11 C 1.45201 * 117.00137 * 179.71953 * 10 8 3 12 12 H 1.08997 * 109.47182 * 30.00237 * 11 10 8 13 13 C 1.50706 * 109.47038 * 149.99875 * 11 10 8 14 14 H 1.08002 * 119.99636 * 0.02562 * 13 11 10 15 15 C 1.37873 * 119.99798 * 179.97438 * 13 11 10 16 16 N 1.31508 * 120.00508 * 0.02562 * 15 13 11 17 17 Si 1.86809 * 119.99737 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47095 * 90.00253 * 17 15 13 19 19 H 1.48500 * 109.47077 * 210.00349 * 17 15 13 20 20 H 1.48498 * 109.47034 * 330.00369 * 17 15 13 21 21 C 1.50698 * 109.47225 * 269.99702 * 11 10 8 22 22 C 1.34518 * 125.78862 * 145.00195 * 21 11 10 23 23 C 1.41383 * 106.84147 * 180.02562 * 22 21 11 24 24 C 1.34516 * 106.83955 * 359.97438 * 23 22 21 25 25 O 1.34297 * 125.79183 * 324.69507 * 21 11 10 26 26 H 1.09000 * 109.47278 * 300.00777 * 1 2 3 27 27 H 1.08998 * 109.46882 * 60.00298 * 1 2 3 28 28 H 1.09004 * 109.46966 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47101 * 239.99636 * 2 1 3 30 30 H 1.09006 * 109.46726 * 119.99428 * 2 1 3 31 31 H 1.08998 * 109.46756 * 179.97438 * 6 3 2 32 32 H 1.08996 * 109.47135 * 299.99909 * 6 3 2 33 33 H 1.09004 * 109.46762 * 300.00011 * 7 6 3 34 34 H 1.08996 * 109.47179 * 59.99522 * 7 6 3 35 35 H 1.08995 * 109.47223 * 180.02562 * 7 6 3 36 36 H 0.97003 * 120.00681 * 179.97438 * 16 15 13 37 37 H 1.07999 * 126.57450 * 0.03319 * 22 21 11 38 38 H 1.07999 * 126.57516 * 179.97438 * 23 22 21 39 39 H 1.07999 * 125.78830 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5493 2.1363 -1.2020 5 7 1.1707 2.6718 -2.1296 6 6 1.5299 2.1639 1.2492 7 6 2.0399 1.4428 2.4985 8 6 3.5470 1.4426 -0.0006 9 8 4.1511 0.3961 -0.0006 10 8 4.2181 2.6049 0.0048 11 6 5.6681 2.5289 0.0102 12 1 5.9863 1.6225 -0.5047 13 6 6.2368 3.7332 -0.6952 14 1 5.5747 4.4811 -1.1059 15 6 7.6024 3.8807 -0.8151 16 7 8.4087 2.9703 -0.3145 17 14 8.3074 5.3738 -1.6888 18 1 8.5258 6.4653 -0.7057 19 1 9.6009 5.0119 -2.3220 20 1 7.3559 5.8313 -2.7330 21 6 6.1643 2.4992 1.4328 22 6 7.2333 1.8153 1.8789 23 6 7.3326 2.0696 3.2661 24 6 6.3186 2.8942 3.5846 25 8 5.6178 3.1556 2.4691 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.8936 3.1913 1.2493 32 1 0.4399 2.1639 1.2491 33 1 1.6766 0.4150 2.4985 34 1 3.1299 1.4427 2.4984 35 1 1.6762 1.9563 3.3884 36 1 9.3694 3.0739 -0.3992 37 1 7.8899 1.1917 1.2902 38 1 8.0792 1.6771 3.9405 39 1 6.1069 3.2837 4.5694 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344938154.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:14 Heat of formation + Delta-G solvation = -51.495367 kcal Electronic energy + Delta-G solvation = -24104.107968 eV Core-core repulsion = 20592.885906 eV Total energy + Delta-G solvation = -3511.222062 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.41264 -40.42103 -37.71212 -35.97168 -35.14960 -33.37715 -31.72969 -31.36389 -29.82200 -28.39423 -26.66757 -23.80735 -23.45598 -21.84156 -20.75236 -20.50487 -19.43786 -18.05322 -17.00905 -16.85237 -16.25337 -15.70439 -15.34141 -14.91929 -14.80324 -14.52883 -14.20254 -13.43112 -13.26415 -13.01717 -12.91624 -12.65226 -12.58077 -12.09216 -12.07591 -11.93453 -11.80522 -11.61703 -11.55919 -11.36310 -11.25372 -11.15552 -11.01744 -10.76621 -10.69391 -10.42227 -10.20115 -9.80547 -9.49952 -8.87785 -8.68080 -7.29767 -6.25961 -4.45260 2.39115 2.71559 2.77642 2.87254 3.19633 3.24558 3.27575 3.42612 3.82629 3.89643 4.13109 4.22692 4.53443 4.61894 4.99820 5.08113 5.12358 5.25008 5.29689 5.44448 5.57065 5.64865 5.79673 5.80861 5.95073 5.99668 6.02958 6.04074 6.17743 6.31705 6.37783 6.59329 6.94311 7.08889 7.19142 7.27902 7.52906 7.63463 7.67402 7.76343 8.22372 8.39631 8.69219 9.22057 10.71317 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.016169 B = 0.006203 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.250102 B = 4513.082391 C = 5579.058998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.105 4.105 3 C 0.050 3.950 4 C 0.221 3.779 5 N -0.411 5.411 6 C -0.112 4.112 7 C -0.157 4.157 8 C 0.470 3.530 9 O -0.495 6.495 10 O -0.340 6.340 11 C 0.300 3.700 12 H 0.080 0.920 13 C -0.531 4.531 14 H 0.078 0.922 15 C 0.071 3.929 16 N -0.867 5.867 17 Si 0.913 3.087 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.269 1.269 21 C 0.019 3.981 22 C -0.173 4.173 23 C -0.218 4.218 24 C -0.088 4.088 25 O -0.177 6.177 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.269 0.731 37 H 0.146 0.854 38 H 0.130 0.870 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.770 -4.809 6.698 13.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.144 4.144 3 C 0.045 3.955 4 C -0.097 4.097 5 N -0.085 5.085 6 C -0.150 4.150 7 C -0.214 4.214 8 C 0.309 3.691 9 O -0.383 6.383 10 O -0.255 6.255 11 C 0.247 3.753 12 H 0.097 0.903 13 C -0.568 4.568 14 H 0.096 0.904 15 C -0.135 4.135 16 N -0.501 5.501 17 Si 0.740 3.260 18 H -0.202 1.202 19 H -0.207 1.207 20 H -0.194 1.194 21 C -0.032 4.032 22 C -0.193 4.193 23 C -0.238 4.238 24 C -0.156 4.156 25 O -0.074 6.074 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.163 0.837 38 H 0.148 0.852 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -11.145 -4.151 5.272 13.009 hybrid contribution 1.295 0.550 0.148 1.415 sum -9.850 -3.601 5.420 11.805 Atomic orbital electron populations 1.21911 0.94527 1.02600 1.02400 1.21569 0.96274 0.91089 1.05433 1.18289 0.90062 0.97370 0.89787 1.28221 0.93961 0.93639 0.93913 1.81172 1.08620 1.08401 1.10333 1.21663 1.01717 1.00659 0.90974 1.21867 1.02466 1.00510 0.96541 1.22606 0.89539 0.83568 0.73356 1.90654 1.69537 1.33091 1.44985 1.86565 1.25564 1.32025 1.81368 1.19257 0.69827 1.01128 0.85115 0.90304 1.20891 0.91915 1.07210 1.36798 0.90425 1.24916 0.96265 0.97314 0.95005 1.70013 1.04154 1.33665 1.42315 0.86235 0.78439 0.81711 0.79649 1.20226 1.20722 1.19368 1.23496 0.97199 0.93819 0.88671 1.21303 0.99825 1.05304 0.92845 1.21719 1.01099 1.04182 0.96784 1.23599 0.96810 1.04798 0.90348 1.83986 1.49532 1.57882 1.15953 0.91594 0.92747 0.91517 0.90060 0.88471 0.89305 0.89600 0.91799 0.91787 0.91473 0.92069 0.83652 0.85173 0.79909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.31 37.16 0.35 -1.04 16 2 C -0.11 -1.22 3.90 -26.73 -0.10 -1.32 16 3 C 0.05 0.72 0.46 -158.45 -0.07 0.65 16 4 C 0.22 3.56 12.50 -20.76 -0.26 3.30 16 5 N -0.41 -7.29 18.54 42.15 0.78 -6.51 16 6 C -0.11 -1.33 4.53 -26.73 -0.12 -1.46 16 7 C -0.16 -1.79 9.31 37.16 0.35 -1.44 16 8 C 0.47 9.11 5.23 36.00 0.19 9.29 16 9 O -0.50 -10.46 15.20 -18.76 -0.29 -10.75 16 10 O -0.34 -7.72 9.64 -41.99 -0.40 -8.13 16 11 C 0.30 7.68 2.41 -29.03 -0.07 7.61 16 12 H 0.08 2.16 7.16 -51.93 -0.37 1.79 16 13 C -0.53 -14.49 8.89 -34.44 -0.31 -14.80 16 14 H 0.08 2.12 7.81 -52.49 -0.41 1.71 16 15 C 0.07 1.89 5.30 -17.82 -0.09 1.80 16 16 N -0.87 -23.40 10.47 55.43 0.58 -22.82 16 17 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 21 C 0.02 0.47 5.67 -35.62 -0.20 0.27 16 22 C -0.17 -4.14 9.04 -39.70 -0.36 -4.50 16 23 C -0.22 -4.44 10.91 -39.70 -0.43 -4.88 16 24 C -0.09 -1.70 12.09 29.42 0.36 -1.35 16 25 O -0.18 -4.06 10.63 2.21 0.02 -4.04 16 26 H 0.07 0.49 6.43 -51.93 -0.33 0.15 16 27 H 0.05 0.53 7.23 -51.93 -0.38 0.15 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 1.00 8.10 -51.93 -0.42 0.57 16 30 H 0.10 1.05 6.39 -51.93 -0.33 0.72 16 31 H 0.09 1.18 8.11 -51.93 -0.42 0.75 16 32 H 0.09 0.78 6.43 -51.93 -0.33 0.44 16 33 H 0.06 0.61 6.43 -51.93 -0.33 0.27 16 34 H 0.06 0.95 7.22 -51.93 -0.37 0.57 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.15 3.60 7.49 -52.49 -0.39 3.21 16 38 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 39 H 0.18 2.64 8.06 -52.49 -0.42 2.22 16 LS Contribution 334.39 15.07 5.04 5.04 Total: -1.00 -30.47 334.39 -5.00 -35.47 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -4.93 Total: 3.75 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -0.79 Total: -7.86 kcal Atomic # 7 Polarization: -30.69 SS G_CDS: 1.36 Total: -29.33 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.67 Total: -22.91 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.47 -5.00 -35.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344938154.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.024 kcal (2) G-P(sol) polarization free energy of solvation -30.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds