Wall clock time and date at job start Tue Mar 31 2020 06:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46952 * 2 1 4 4 C 1.47207 * 109.46717 * 299.99539 * 3 2 1 5 5 N 3.43552 * 83.99648 * 321.44262 * 2 1 3 6 6 C 1.53004 * 109.47494 * 59.99452 * 3 2 1 7 7 C 1.52996 * 109.46913 * 60.00420 * 6 3 2 8 8 C 1.50696 * 109.47298 * 180.02562 * 3 2 1 9 9 O 1.20833 * 119.99655 * 359.97438 * 8 3 2 10 10 O 1.34222 * 120.00432 * 180.27351 * 8 3 2 11 11 C 1.45201 * 117.00137 * 179.71953 * 10 8 3 12 12 H 1.08997 * 109.47182 * 30.00237 * 11 10 8 13 13 C 1.50706 * 109.47038 * 149.99875 * 11 10 8 14 14 H 1.08002 * 119.99636 * 0.02562 * 13 11 10 15 15 C 1.37873 * 119.99798 * 179.97438 * 13 11 10 16 16 N 1.31508 * 120.00508 * 0.02562 * 15 13 11 17 17 Si 1.86809 * 119.99737 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47095 * 90.00253 * 17 15 13 19 19 H 1.48500 * 109.47077 * 210.00349 * 17 15 13 20 20 H 1.48498 * 109.47034 * 330.00369 * 17 15 13 21 21 C 1.50698 * 109.47225 * 269.99702 * 11 10 8 22 22 C 1.34518 * 125.78862 * 145.00195 * 21 11 10 23 23 C 1.41383 * 106.84147 * 180.02562 * 22 21 11 24 24 C 1.34516 * 106.83955 * 359.97438 * 23 22 21 25 25 O 1.34297 * 125.79183 * 324.69507 * 21 11 10 26 26 H 1.09000 * 109.47278 * 300.00777 * 1 2 3 27 27 H 1.08998 * 109.46882 * 60.00298 * 1 2 3 28 28 H 1.09004 * 109.46966 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47101 * 239.99636 * 2 1 3 30 30 H 1.09006 * 109.46726 * 119.99428 * 2 1 3 31 31 H 1.08998 * 109.46756 * 179.97438 * 6 3 2 32 32 H 1.08996 * 109.47135 * 299.99909 * 6 3 2 33 33 H 1.09004 * 109.46762 * 300.00011 * 7 6 3 34 34 H 1.08996 * 109.47179 * 59.99522 * 7 6 3 35 35 H 1.08995 * 109.47223 * 180.02562 * 7 6 3 36 36 H 0.97003 * 120.00681 * 179.97438 * 16 15 13 37 37 H 1.07999 * 126.57450 * 0.03319 * 22 21 11 38 38 H 1.07999 * 126.57516 * 179.97438 * 23 22 21 39 39 H 1.07999 * 125.78830 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5493 2.1363 -1.2020 5 7 1.1707 2.6718 -2.1296 6 6 1.5299 2.1639 1.2492 7 6 2.0399 1.4428 2.4985 8 6 3.5470 1.4426 -0.0006 9 8 4.1511 0.3961 -0.0006 10 8 4.2181 2.6049 0.0048 11 6 5.6681 2.5289 0.0102 12 1 5.9863 1.6225 -0.5047 13 6 6.2368 3.7332 -0.6952 14 1 5.5747 4.4811 -1.1059 15 6 7.6024 3.8807 -0.8151 16 7 8.4087 2.9703 -0.3145 17 14 8.3074 5.3738 -1.6888 18 1 8.5258 6.4653 -0.7057 19 1 9.6009 5.0119 -2.3220 20 1 7.3559 5.8313 -2.7330 21 6 6.1643 2.4992 1.4328 22 6 7.2333 1.8153 1.8789 23 6 7.3326 2.0696 3.2661 24 6 6.3186 2.8942 3.5846 25 8 5.6178 3.1556 2.4691 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.8936 3.1913 1.2493 32 1 0.4399 2.1639 1.2491 33 1 1.6766 0.4150 2.4985 34 1 3.1299 1.4427 2.4984 35 1 1.6762 1.9563 3.3884 36 1 9.3694 3.0739 -0.3992 37 1 7.8899 1.1917 1.2902 38 1 8.0792 1.6771 3.9405 39 1 6.1069 3.2837 4.5694 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344938154.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:13 Heat of formation + Delta-G solvation = -68.197104 kcal Electronic energy + Delta-G solvation = -24104.832210 eV Core-core repulsion = 20592.885906 eV Total energy + Delta-G solvation = -3511.946304 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.14653 -41.92731 -39.08614 -37.63907 -36.44390 -35.35411 -33.47960 -32.27011 -31.61086 -29.55664 -28.51931 -25.29504 -24.72337 -23.27808 -22.29100 -21.92646 -21.17039 -19.62513 -18.78223 -18.55598 -17.56174 -17.41561 -16.84862 -16.66639 -16.34876 -15.86924 -15.54057 -14.86050 -14.80680 -14.44583 -14.17758 -13.86766 -13.77628 -13.68964 -13.48726 -13.47783 -13.23433 -13.02102 -12.96057 -12.86864 -12.78440 -12.56520 -12.28534 -12.23874 -12.10035 -11.72943 -11.64044 -11.41247 -11.29500 -10.83972 -10.46584 -9.08402 -8.25896 -6.56473 0.89290 1.11498 1.31450 1.37484 1.39135 1.48159 1.49528 1.91706 2.13187 2.35182 2.43921 2.56226 2.97527 3.42332 3.54617 3.68813 4.22654 4.23910 4.35051 4.40819 4.44857 4.45965 4.60439 4.63440 4.74310 4.77941 5.01457 5.11554 5.15745 5.17422 5.20209 5.30796 5.33185 5.42996 5.48613 5.51788 5.63397 5.78495 5.95763 6.22041 6.44603 6.54242 6.79519 7.15056 8.68441 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.016169 B = 0.006203 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.250102 B = 4513.082391 C = 5579.058998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.104 4.104 3 C 0.058 3.942 4 C 0.234 3.766 5 N -0.440 5.440 6 C -0.110 4.110 7 C -0.153 4.153 8 C 0.463 3.537 9 O -0.518 6.518 10 O -0.352 6.352 11 C 0.304 3.696 12 H 0.044 0.956 13 C -0.559 4.559 14 H 0.067 0.933 15 C 0.030 3.970 16 N -0.885 5.885 17 Si 0.975 3.025 18 H -0.271 1.271 19 H -0.271 1.271 20 H -0.268 1.268 21 C -0.007 4.007 22 C -0.188 4.188 23 C -0.229 4.229 24 C -0.066 4.066 25 O -0.190 6.190 26 H 0.087 0.913 27 H 0.044 0.956 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.072 0.928 32 H 0.126 0.874 33 H 0.086 0.914 34 H 0.023 0.977 35 H 0.090 0.910 36 H 0.272 0.728 37 H 0.125 0.875 38 H 0.164 0.836 39 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.096 -4.446 8.770 15.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.142 4.142 3 C 0.053 3.947 4 C -0.084 4.084 5 N -0.116 5.116 6 C -0.148 4.148 7 C -0.210 4.210 8 C 0.305 3.695 9 O -0.406 6.406 10 O -0.268 6.268 11 C 0.250 3.750 12 H 0.062 0.938 13 C -0.596 4.596 14 H 0.085 0.915 15 C -0.174 4.174 16 N -0.520 5.520 17 Si 0.798 3.202 18 H -0.197 1.197 19 H -0.196 1.196 20 H -0.192 1.192 21 C -0.058 4.058 22 C -0.208 4.208 23 C -0.248 4.248 24 C -0.132 4.132 25 O -0.087 6.087 26 H 0.106 0.894 27 H 0.063 0.937 28 H 0.106 0.894 29 H 0.087 0.913 30 H 0.125 0.875 31 H 0.091 0.909 32 H 0.144 0.856 33 H 0.105 0.895 34 H 0.042 0.958 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.143 0.857 38 H 0.181 0.819 39 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -12.485 -3.802 7.345 14.976 hybrid contribution 1.706 0.358 -0.430 1.795 sum -10.779 -3.445 6.915 13.262 Atomic orbital electron populations 1.21916 0.91681 1.04241 1.02961 1.21683 0.98535 0.88609 1.05388 1.18591 0.85952 0.99724 0.90413 1.28502 0.93253 0.92872 0.93755 1.81175 1.09652 1.09553 1.11173 1.21793 1.03995 0.99357 0.89663 1.21873 0.99831 1.02237 0.97086 1.23614 0.91524 0.82328 0.72074 1.90628 1.70612 1.33550 1.45855 1.86545 1.24309 1.33967 1.81967 1.18768 0.71397 0.98884 0.85928 0.93830 1.21110 0.92616 1.07748 1.38150 0.91478 1.25715 0.96315 0.99953 0.95447 1.70130 1.04321 1.34850 1.42657 0.85305 0.77898 0.78396 0.78614 1.19651 1.19623 1.19237 1.23144 0.98118 0.95666 0.88866 1.21354 0.99343 1.05176 0.94883 1.22039 1.02590 1.04854 0.95360 1.24658 0.94962 1.02675 0.90955 1.83962 1.50224 1.57951 1.16588 0.89398 0.93733 0.89426 0.91333 0.87468 0.90924 0.85579 0.89550 0.95772 0.89110 0.91855 0.85713 0.81892 0.74423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.31 71.98 0.67 -1.52 16 2 C -0.10 -2.26 3.90 30.59 0.12 -2.14 16 3 C 0.06 1.65 0.46 -54.73 -0.03 1.63 16 4 C 0.23 7.53 12.50 89.44 1.12 8.65 16 5 N -0.44 -15.73 18.54 20.01 0.37 -15.36 16 6 C -0.11 -2.43 4.53 30.59 0.14 -2.29 16 7 C -0.15 -3.17 9.31 71.98 0.67 -2.50 16 8 C 0.46 18.68 5.23 71.23 0.37 19.06 16 9 O -0.52 -23.05 15.20 21.94 0.33 -22.72 16 10 O -0.35 -16.84 9.64 -48.71 -0.47 -17.31 16 11 C 0.30 16.48 2.41 29.10 0.07 16.55 16 12 H 0.04 2.61 7.16 -2.39 -0.02 2.59 16 13 C -0.56 -31.90 8.89 25.60 0.23 -31.68 16 14 H 0.07 3.84 7.81 -2.91 -0.02 3.81 16 15 C 0.03 1.62 5.30 84.65 0.45 2.07 16 16 N -0.89 -49.24 10.47 21.44 0.22 -49.02 16 17 Si 0.97 43.33 29.54 68.60 2.03 45.35 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 C -0.01 -0.38 5.67 24.83 0.14 -0.24 16 22 C -0.19 -9.21 9.04 22.19 0.20 -9.01 16 23 C -0.23 -9.00 10.91 22.19 0.24 -8.76 16 24 C -0.07 -2.39 12.09 66.97 0.81 -1.58 16 25 O -0.19 -8.69 10.63 0.91 0.01 -8.69 16 26 H 0.09 0.90 6.43 -2.39 -0.02 0.89 16 27 H 0.04 0.76 7.23 -2.39 -0.02 0.74 16 28 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.07 1.66 8.10 -2.39 -0.02 1.64 16 30 H 0.11 2.13 6.39 -2.38 -0.02 2.12 16 31 H 0.07 1.87 8.11 -2.39 -0.02 1.85 16 32 H 0.13 1.80 6.43 -2.39 -0.02 1.79 16 33 H 0.09 1.38 6.43 -2.38 -0.02 1.36 16 34 H 0.02 0.69 7.22 -2.39 -0.02 0.67 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 37 H 0.12 6.53 7.49 -2.91 -0.02 6.51 16 38 H 0.16 5.17 8.06 -2.91 -0.02 5.15 16 39 H 0.24 5.67 8.06 -2.91 -0.02 5.65 16 Total: -1.00 -70.57 334.39 8.77 -61.80 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 1.07 Total: 17.71 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: 5.20 Total: -11.77 kcal Atomic # 7 Polarization: -64.97 SS G_CDS: 0.60 Total: -64.37 kcal Atomic # 8 Polarization: -48.59 SS G_CDS: -0.13 Total: -48.72 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -70.57 8.77 -61.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344938154.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.396 kcal (2) G-P(sol) polarization free energy of solvation -70.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds