Wall clock time and date at job start Tue Mar 31 2020 06:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35712 * 117.00335 * 2 1 4 4 C 1.39019 * 119.90702 * 359.97438 * 3 2 1 5 5 C 1.37682 * 120.08660 * 180.02562 * 4 3 2 6 6 C 1.39757 * 119.91040 * 0.02562 * 5 4 3 7 7 C 1.47606 * 120.08589 * 180.02562 * 6 5 4 8 8 O 1.21583 * 119.99803 * 173.08522 * 7 6 5 9 9 N 1.34771 * 119.99972 * 353.07492 * 7 6 5 10 10 C 1.47582 * 134.49079 * 174.43700 * 9 7 6 11 11 C 1.53944 * 86.11552 * 155.36465 * 10 9 7 12 12 O 1.42905 * 113.74459 * 269.15875 * 11 10 9 13 13 C 1.50701 * 113.74391 * 137.95627 * 11 10 9 14 14 H 1.07995 * 119.99851 * 1.92386 * 13 11 10 15 15 C 1.37874 * 120.00284 * 181.92256 * 13 11 10 16 16 N 1.31516 * 120.00083 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 120.00225 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47522 * 180.02562 * 17 15 13 19 19 H 1.48497 * 109.47178 * 300.00431 * 17 15 13 20 20 H 1.48504 * 109.47177 * 60.00316 * 17 15 13 21 21 C 1.47810 * 134.45975 * 354.31392 * 9 7 6 22 22 C 1.39711 * 119.82476 * 0.26536 * 6 5 4 23 23 C 1.37723 * 119.90850 * 359.45874 * 22 6 5 24 24 C 1.50702 * 119.95459 * 180.24827 * 23 22 6 25 25 H 1.08999 * 109.47304 * 59.99790 * 1 2 3 26 26 H 1.08994 * 109.47104 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46642 * 299.99814 * 1 2 3 28 28 H 1.08001 * 119.95968 * 0.04798 * 4 3 2 29 29 H 1.07999 * 120.04650 * 180.02562 * 5 4 3 30 30 H 1.09002 * 113.76891 * 41.06866 * 10 9 7 31 31 H 1.08996 * 113.87587 * 269.67910 * 10 9 7 32 32 H 0.96694 * 114.00368 * 178.07593 * 12 11 10 33 33 H 0.96994 * 120.00487 * 179.97438 * 16 15 13 34 34 H 1.09003 * 113.77303 * 90.37118 * 21 9 7 35 35 H 1.09003 * 113.83252 * 318.91555 * 21 9 7 36 36 H 1.07999 * 120.04697 * 179.72636 * 22 6 5 37 37 H 1.09002 * 109.47470 * 270.29729 * 24 23 22 38 38 H 1.08999 * 109.47480 * 30.29900 * 24 23 22 39 39 H 1.09008 * 109.47119 * 150.29600 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2862 2.3739 -0.0005 5 6 1.9075 3.6026 -0.0011 6 6 3.3030 3.6778 -0.0016 7 6 3.9731 4.9930 -0.0016 8 8 5.1805 5.0601 0.1247 9 7 3.2466 6.1194 -0.1418 10 6 3.5536 7.5619 -0.0852 11 6 2.3117 7.7544 -0.9743 12 8 2.5968 7.7284 -2.3744 13 6 1.4525 8.9251 -0.5714 14 1 1.7505 9.5549 0.2537 15 6 0.2859 9.1920 -1.2560 16 7 -0.0773 8.4247 -2.2605 17 14 -0.7794 10.6427 -0.7561 18 1 -1.9689 10.7120 -1.6424 19 1 -1.2207 10.4710 0.6513 20 1 0.0042 11.8981 -0.8795 21 6 1.8227 6.4055 -0.4164 22 6 4.0621 2.5049 -0.0072 23 6 3.4331 1.2798 -0.0009 24 6 4.2509 0.0140 -0.0013 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 0.2078 2.3149 -0.0002 29 1 1.3172 4.5070 -0.0011 30 1 4.4898 7.8313 -0.5740 31 1 3.4531 7.9956 0.9097 32 1 1.8154 7.8196 -2.9367 33 1 -0.8982 8.6122 -2.7420 34 1 1.2118 6.4971 0.4818 35 1 1.3796 5.7534 -1.1690 36 1 5.1408 2.5589 -0.0121 37 1 4.4478 -0.2912 -1.0291 38 1 5.1958 0.1917 0.5122 39 1 3.7007 -0.7743 0.5127 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349456123.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:15 Heat of formation + Delta-G solvation = -56.364406 kcal Electronic energy + Delta-G solvation = -23155.405595 eV Core-core repulsion = 19643.972396 eV Total energy + Delta-G solvation = -3511.433199 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.44999 -39.44740 -37.71018 -36.68858 -34.03636 -32.90204 -32.24703 -30.39914 -28.63576 -27.75392 -26.81672 -25.43910 -25.16586 -22.67085 -21.77336 -19.96101 -18.64842 -17.96270 -17.44933 -16.65856 -16.19881 -15.92617 -15.41104 -15.05170 -14.66246 -14.49827 -14.22530 -13.86555 -13.59334 -13.29480 -13.07054 -12.83692 -12.58350 -12.28469 -12.16032 -12.08966 -11.95612 -11.69223 -11.59269 -11.14663 -11.07035 -11.03166 -10.75047 -10.52047 -10.31724 -9.65833 -9.24443 -8.82881 -8.79348 -8.40526 -8.16476 -7.80326 -6.41948 -4.52519 1.10033 1.38709 3.12985 3.14228 3.20326 3.20933 3.23183 3.53451 4.09402 4.16829 4.70962 4.78127 4.80600 4.91714 4.97988 4.99218 5.25200 5.32073 5.36633 5.50318 5.55231 5.61954 5.66167 5.88386 5.91610 6.05921 6.19752 6.28968 6.30696 6.38638 6.44225 6.49870 6.61321 6.67982 6.78567 7.06717 7.27956 7.60024 7.79282 8.45376 8.50766 8.77020 9.18813 9.40625 10.64690 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020177 B = 0.004216 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.419154 B = 6639.809751 C = 7667.728211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.314 6.314 3 C 0.142 3.858 4 C -0.214 4.214 5 C -0.059 4.059 6 C -0.154 4.154 7 C 0.573 3.427 8 O -0.564 6.564 9 N -0.627 5.627 10 C 0.113 3.887 11 C 0.240 3.760 12 O -0.571 6.571 13 C -0.538 4.538 14 H 0.071 0.929 15 C 0.073 3.927 16 N -0.898 5.898 17 Si 0.907 3.093 18 H -0.285 1.285 19 H -0.274 1.274 20 H -0.273 1.273 21 C 0.071 3.929 22 C -0.028 4.028 23 C -0.132 4.132 24 C -0.101 4.101 25 H 0.058 0.942 26 H 0.099 0.901 27 H 0.056 0.944 28 H 0.132 0.868 29 H 0.148 0.852 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.391 0.609 33 H 0.274 0.726 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.140 0.860 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.869 -13.777 3.955 14.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.227 6.227 3 C 0.096 3.904 4 C -0.232 4.232 5 C -0.077 4.077 6 C -0.157 4.157 7 C 0.364 3.636 8 O -0.446 6.446 9 N -0.360 5.360 10 C -0.009 4.009 11 C 0.198 3.802 12 O -0.383 6.383 13 C -0.577 4.577 14 H 0.090 0.910 15 C -0.129 4.129 16 N -0.538 5.538 17 Si 0.734 3.266 18 H -0.210 1.210 19 H -0.199 1.199 20 H -0.198 1.198 21 C -0.051 4.051 22 C -0.047 4.047 23 C -0.133 4.133 24 C -0.157 4.157 25 H 0.076 0.924 26 H 0.117 0.883 27 H 0.075 0.925 28 H 0.150 0.850 29 H 0.165 0.835 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.246 0.754 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.158 0.842 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.599 -14.195 4.103 14.789 hybrid contribution -1.700 0.896 0.031 1.922 sum -2.299 -13.300 4.133 14.116 Atomic orbital electron populations 1.23087 0.78349 1.03825 1.01718 1.85995 1.21386 1.26993 1.88310 1.19056 0.91795 0.84124 0.95388 1.21180 1.00146 0.91972 1.09922 1.21854 0.94049 0.98514 0.93306 1.19925 0.93691 0.93648 1.08455 1.17776 0.86088 0.83043 0.76679 1.90696 1.13844 1.87175 1.52855 1.50062 1.12107 1.05571 1.68254 1.23459 1.00541 0.77242 0.99662 1.19845 0.89238 0.90511 0.80597 1.86077 1.39402 1.95913 1.16878 1.21476 1.05968 1.13062 1.17154 0.91042 1.25060 0.97175 0.96475 0.94234 1.69393 1.25057 1.38440 1.20930 0.86398 0.79324 0.82256 0.78608 1.21014 1.19902 1.19823 1.24460 0.81340 0.99645 0.99676 1.20974 1.00446 0.89545 0.93703 1.19139 0.90475 0.96046 1.07625 1.20573 0.98771 0.94123 1.02262 0.92378 0.88304 0.92504 0.84997 0.83501 0.90969 0.89470 0.75396 0.91619 0.89770 0.90741 0.84220 0.91465 0.91567 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.73 9.52 -18.84 -0.18 -3.91 16 3 C 0.14 1.96 6.67 -39.02 -0.26 1.70 16 4 C -0.21 -2.97 9.01 -39.50 -0.36 -3.32 16 5 C -0.06 -0.96 9.07 -39.22 -0.36 -1.32 16 6 C -0.15 -2.81 5.88 -104.96 -0.62 -3.42 16 7 C 0.57 12.35 7.98 -12.44 -0.10 12.25 16 8 O -0.56 -13.49 17.10 5.29 0.09 -13.40 16 9 N -0.63 -13.52 3.60 -179.33 -0.65 -14.16 16 10 C 0.11 2.46 8.23 -2.97 -0.02 2.44 16 11 C 0.24 5.67 1.40 -90.85 -0.13 5.54 16 12 O -0.57 -14.60 13.48 -35.23 -0.48 -15.08 16 13 C -0.54 -13.22 8.61 -34.44 -0.30 -13.52 16 14 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 15 C 0.07 1.78 5.39 -17.82 -0.10 1.69 16 16 N -0.90 -22.19 11.20 55.43 0.62 -21.57 16 17 Si 0.91 19.04 29.54 -169.99 -5.02 14.02 16 18 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 21 C 0.07 1.50 5.60 -2.84 -0.02 1.48 16 22 C -0.03 -0.45 9.23 -39.22 -0.36 -0.81 16 23 C -0.13 -1.86 5.89 -104.54 -0.62 -2.48 16 24 C -0.10 -1.11 9.78 36.01 0.35 -0.76 16 25 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16 26 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.42 7.65 -51.92 -0.40 0.02 16 28 H 0.13 1.49 6.28 -52.49 -0.33 1.16 16 29 H 0.15 2.42 4.08 -52.49 -0.21 2.21 16 30 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 31 H 0.09 1.73 8.09 -51.93 -0.42 1.31 16 32 H 0.39 10.03 6.60 45.56 0.30 10.33 16 33 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 34 H 0.08 1.66 7.99 -51.93 -0.42 1.25 16 35 H 0.07 1.56 6.90 -51.93 -0.36 1.20 16 36 H 0.14 2.19 7.66 -52.49 -0.40 1.79 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 39 H 0.07 0.72 7.52 -51.92 -0.39 0.33 16 LS Contribution 327.36 15.07 4.93 4.93 Total: -1.00 -29.03 327.36 -6.82 -35.84 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -4.26 Total: 12.67 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -1.88 Total: 0.66 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: -0.02 Total: -35.73 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -0.56 Total: -32.39 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.02 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.03 -6.82 -35.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349456123.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.523 kcal (2) G-P(sol) polarization free energy of solvation -29.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds