Wall clock time and date at job start Tue Mar 31 2020 06:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35712 * 117.00335 * 2 1 4 4 C 1.39019 * 119.90702 * 359.97438 * 3 2 1 5 5 C 1.37682 * 120.08660 * 180.02562 * 4 3 2 6 6 C 1.39757 * 119.91040 * 0.02562 * 5 4 3 7 7 C 1.47606 * 120.08589 * 180.02562 * 6 5 4 8 8 O 1.21583 * 119.99803 * 173.08522 * 7 6 5 9 9 N 1.34771 * 119.99972 * 353.07492 * 7 6 5 10 10 C 1.47582 * 134.49079 * 174.43700 * 9 7 6 11 11 C 1.53944 * 86.11552 * 155.36465 * 10 9 7 12 12 O 1.42905 * 113.74459 * 269.15875 * 11 10 9 13 13 C 1.50701 * 113.74391 * 137.95627 * 11 10 9 14 14 H 1.07995 * 119.99851 * 1.92386 * 13 11 10 15 15 C 1.37874 * 120.00284 * 181.92256 * 13 11 10 16 16 N 1.31516 * 120.00083 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 120.00225 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47522 * 180.02562 * 17 15 13 19 19 H 1.48497 * 109.47178 * 300.00431 * 17 15 13 20 20 H 1.48504 * 109.47177 * 60.00316 * 17 15 13 21 21 C 1.47810 * 134.45975 * 354.31392 * 9 7 6 22 22 C 1.39711 * 119.82476 * 0.26536 * 6 5 4 23 23 C 1.37723 * 119.90850 * 359.45874 * 22 6 5 24 24 C 1.50702 * 119.95459 * 180.24827 * 23 22 6 25 25 H 1.08999 * 109.47304 * 59.99790 * 1 2 3 26 26 H 1.08994 * 109.47104 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46642 * 299.99814 * 1 2 3 28 28 H 1.08001 * 119.95968 * 0.04798 * 4 3 2 29 29 H 1.07999 * 120.04650 * 180.02562 * 5 4 3 30 30 H 1.09002 * 113.76891 * 41.06866 * 10 9 7 31 31 H 1.08996 * 113.87587 * 269.67910 * 10 9 7 32 32 H 0.96694 * 114.00368 * 178.07593 * 12 11 10 33 33 H 0.96994 * 120.00487 * 179.97438 * 16 15 13 34 34 H 1.09003 * 113.77303 * 90.37118 * 21 9 7 35 35 H 1.09003 * 113.83252 * 318.91555 * 21 9 7 36 36 H 1.07999 * 120.04697 * 179.72636 * 22 6 5 37 37 H 1.09002 * 109.47470 * 270.29729 * 24 23 22 38 38 H 1.08999 * 109.47480 * 30.29900 * 24 23 22 39 39 H 1.09008 * 109.47119 * 150.29600 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2862 2.3739 -0.0005 5 6 1.9075 3.6026 -0.0011 6 6 3.3030 3.6778 -0.0016 7 6 3.9731 4.9930 -0.0016 8 8 5.1805 5.0601 0.1247 9 7 3.2466 6.1194 -0.1418 10 6 3.5536 7.5619 -0.0852 11 6 2.3117 7.7544 -0.9743 12 8 2.5968 7.7284 -2.3744 13 6 1.4525 8.9251 -0.5714 14 1 1.7505 9.5549 0.2537 15 6 0.2859 9.1920 -1.2560 16 7 -0.0773 8.4247 -2.2605 17 14 -0.7794 10.6427 -0.7561 18 1 -1.9689 10.7120 -1.6424 19 1 -1.2207 10.4710 0.6513 20 1 0.0042 11.8981 -0.8795 21 6 1.8227 6.4055 -0.4164 22 6 4.0621 2.5049 -0.0072 23 6 3.4331 1.2798 -0.0009 24 6 4.2509 0.0140 -0.0013 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 0.2078 2.3149 -0.0002 29 1 1.3172 4.5070 -0.0011 30 1 4.4898 7.8313 -0.5740 31 1 3.4531 7.9956 0.9097 32 1 1.8154 7.8196 -2.9367 33 1 -0.8982 8.6122 -2.7420 34 1 1.2118 6.4971 0.4818 35 1 1.3796 5.7534 -1.1690 36 1 5.1408 2.5589 -0.0121 37 1 4.4478 -0.2912 -1.0291 38 1 5.1958 0.1917 0.5122 39 1 3.7007 -0.7743 0.5127 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349456123.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:14 Heat of formation + Delta-G solvation = -75.838931 kcal Electronic energy + Delta-G solvation = -23156.250074 eV Core-core repulsion = 19643.972396 eV Total energy + Delta-G solvation = -3512.277678 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.73228 -40.88779 -39.22840 -38.02893 -35.88682 -34.16043 -34.02385 -31.67887 -30.22832 -28.54371 -28.08718 -27.20298 -26.68733 -24.01626 -22.88535 -21.62643 -20.24868 -19.27529 -19.02466 -18.05976 -17.64918 -17.03480 -16.79469 -16.67492 -16.33525 -16.00124 -15.52637 -15.15933 -14.93301 -14.45841 -14.41573 -14.24378 -14.11955 -13.81189 -13.56889 -13.41973 -13.04922 -12.99404 -12.80665 -12.75795 -12.64259 -12.25175 -12.22432 -12.03853 -11.81982 -11.41183 -11.01702 -10.64482 -10.23304 -9.97793 -9.65808 -9.19575 -8.26006 -6.43302 -0.16696 0.23211 1.49038 1.51519 1.58352 1.77538 1.89138 2.24982 2.41515 2.74799 2.96542 3.40750 3.63287 3.75380 3.77963 4.09372 4.12145 4.21679 4.37665 4.40763 4.41061 4.48887 4.55986 4.59352 4.72379 4.75892 4.79581 4.83201 4.83441 4.95159 5.16090 5.18148 5.21160 5.27827 5.39715 5.62098 5.72591 5.92520 6.29600 6.62218 6.76972 7.09176 7.30197 7.43761 8.80023 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020177 B = 0.004216 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.419154 B = 6639.809751 C = 7667.728211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.316 6.316 3 C 0.151 3.849 4 C -0.209 4.209 5 C -0.064 4.064 6 C -0.184 4.184 7 C 0.566 3.434 8 O -0.599 6.599 9 N -0.631 5.631 10 C 0.111 3.889 11 C 0.220 3.780 12 O -0.587 6.587 13 C -0.558 4.558 14 H 0.073 0.927 15 C 0.037 3.963 16 N -0.915 5.915 17 Si 0.968 3.032 18 H -0.282 1.282 19 H -0.267 1.267 20 H -0.276 1.276 21 C 0.090 3.910 22 C -0.034 4.034 23 C -0.134 4.134 24 C -0.098 4.098 25 H 0.064 0.936 26 H 0.126 0.874 27 H 0.067 0.933 28 H 0.161 0.839 29 H 0.142 0.858 30 H 0.059 0.941 31 H 0.107 0.893 32 H 0.388 0.612 33 H 0.276 0.724 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.136 0.864 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.663 -15.359 4.630 16.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.229 6.229 3 C 0.105 3.895 4 C -0.228 4.228 5 C -0.083 4.083 6 C -0.187 4.187 7 C 0.359 3.641 8 O -0.483 6.483 9 N -0.363 5.363 10 C -0.011 4.011 11 C 0.179 3.821 12 O -0.398 6.398 13 C -0.596 4.596 14 H 0.091 0.909 15 C -0.164 4.164 16 N -0.555 5.555 17 Si 0.793 3.207 18 H -0.208 1.208 19 H -0.191 1.191 20 H -0.202 1.202 21 C -0.032 4.032 22 C -0.053 4.053 23 C -0.135 4.135 24 C -0.155 4.155 25 H 0.083 0.917 26 H 0.144 0.856 27 H 0.085 0.915 28 H 0.178 0.822 29 H 0.160 0.840 30 H 0.077 0.923 31 H 0.125 0.875 32 H 0.242 0.758 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.154 0.846 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.408 -15.794 4.783 16.678 hybrid contribution -1.185 1.266 -0.203 1.746 sum -3.593 -14.529 4.581 15.652 Atomic orbital electron populations 1.23455 0.76109 1.06032 1.02509 1.86012 1.23617 1.25702 1.87565 1.19167 0.91852 0.84881 0.93635 1.21423 1.01616 0.90982 1.08749 1.21800 0.93150 0.99450 0.93874 1.19779 0.94672 0.92329 1.11885 1.18381 0.85851 0.84099 0.75721 1.90654 1.15284 1.87789 1.54600 1.50094 1.12314 1.05495 1.68382 1.23505 0.99332 0.78019 1.00259 1.20128 0.90332 0.91849 0.79781 1.86064 1.39535 1.96109 1.18133 1.21687 1.06542 1.13725 1.17650 0.90875 1.25712 0.98060 0.98526 0.94150 1.69457 1.25343 1.39378 1.21348 0.85458 0.77638 0.79121 0.78517 1.20777 1.19140 1.20188 1.24273 0.81177 0.97845 0.99910 1.21002 1.00321 0.89842 0.94152 1.19434 0.91289 0.96303 1.06478 1.20633 0.98897 0.92774 1.03183 0.91748 0.85574 0.91478 0.82156 0.84047 0.92269 0.87515 0.75827 0.91406 0.88371 0.90863 0.84619 0.90472 0.90607 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.32 -6.45 9.52 -90.33 -0.86 -7.31 16 3 C 0.15 3.80 6.67 22.63 0.15 3.95 16 4 C -0.21 -5.35 9.01 22.33 0.20 -5.15 16 5 C -0.06 -2.05 9.07 22.51 0.20 -1.85 16 6 C -0.18 -6.75 5.88 -20.08 -0.12 -6.86 16 7 C 0.57 25.07 7.98 86.72 0.69 25.76 16 8 O -0.60 -29.68 17.10 -3.98 -0.07 -29.75 16 9 N -0.63 -27.69 3.60 -843.38 -3.03 -30.73 16 10 C 0.11 4.94 8.23 86.48 0.71 5.65 16 11 C 0.22 10.54 1.40 -10.88 -0.02 10.52 16 12 O -0.59 -30.73 13.48 -148.98 -2.01 -32.74 16 13 C -0.56 -27.34 8.61 25.60 0.22 -27.12 16 14 H 0.07 3.47 7.81 -2.91 -0.02 3.45 16 15 C 0.04 1.75 5.39 84.65 0.46 2.21 16 16 N -0.92 -44.95 11.20 21.45 0.24 -44.71 16 17 Si 0.97 38.38 29.54 68.60 2.03 40.41 16 18 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 19 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 20 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 21 C 0.09 3.79 5.60 86.44 0.48 4.28 16 22 C -0.03 -1.10 9.23 22.50 0.21 -0.89 16 23 C -0.13 -3.58 5.89 -19.81 -0.12 -3.69 16 24 C -0.10 -1.96 9.78 71.24 0.70 -1.26 16 25 H 0.06 0.76 7.65 -2.39 -0.02 0.74 16 26 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.07 0.73 7.65 -2.38 -0.02 0.71 16 28 H 0.16 3.09 6.28 -2.91 -0.02 3.07 16 29 H 0.14 4.59 4.08 -2.91 -0.01 4.57 16 30 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.11 4.26 8.09 -2.39 -0.02 4.24 16 32 H 0.39 20.33 6.60 -74.06 -0.49 19.84 16 33 H 0.28 12.87 8.31 -92.71 -0.77 12.10 16 34 H 0.10 3.83 7.99 -2.39 -0.02 3.81 16 35 H 0.07 3.09 6.90 -2.39 -0.02 3.07 16 36 H 0.14 4.36 7.66 -2.91 -0.02 4.33 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.08 1.36 8.09 -2.39 -0.02 1.34 16 39 H 0.08 1.42 7.52 -2.38 -0.02 1.40 16 Total: -1.00 -62.30 327.36 1.78 -60.51 By element: Atomic # 1 Polarization: 36.90 SS G_CDS: 0.60 Total: 37.50 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 4.89 Total: 6.82 kcal Atomic # 7 Polarization: -72.64 SS G_CDS: -2.79 Total: -75.44 kcal Atomic # 8 Polarization: -66.86 SS G_CDS: -2.94 Total: -69.80 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Total: -62.30 1.78 -60.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349456123.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.325 kcal (2) G-P(sol) polarization free energy of solvation -62.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds