Wall clock time and date at job start Tue Mar 31 2020 07:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47253 * 2 1 4 4 C 1.50698 * 109.47128 * 119.99848 * 2 1 3 5 5 H 1.07996 * 120.00254 * 125.27000 * 4 2 1 6 6 C 1.37881 * 119.99901 * 305.27420 * 4 2 1 7 7 N 1.31522 * 119.99972 * 159.77740 * 6 4 2 8 8 Si 1.86794 * 120.00231 * 339.77804 * 6 4 2 9 9 H 1.48508 * 109.47086 * 275.51685 * 8 6 4 10 10 H 1.48496 * 109.46907 * 35.51232 * 8 6 4 11 11 H 1.48497 * 109.47460 * 155.51315 * 8 6 4 12 12 C 1.52995 * 109.47371 * 239.99840 * 2 1 3 13 13 S 1.81400 * 109.46932 * 59.99917 * 12 2 1 14 14 O 1.42101 * 110.54633 * 291.62421 * 13 12 2 15 15 O 1.42102 * 110.54312 * 68.37973 * 13 12 2 16 16 N 1.65609 * 104.44935 * 179.97438 * 13 12 2 17 17 C 1.46497 * 119.99563 * 65.00423 * 16 13 12 18 18 C 1.52997 * 109.47281 * 164.99751 * 17 16 13 19 19 H 1.09010 * 110.45329 * 52.39351 * 18 17 16 20 20 C 1.54511 * 110.51624 * 174.99460 * 18 17 16 21 21 C 1.54478 * 104.06100 * 118.64395 * 20 18 17 22 22 O 1.44435 * 104.80194 * 23.98341 * 21 20 18 23 23 C 1.44419 * 105.27397 * 319.48693 * 22 21 20 24 24 H 1.08998 * 109.47159 * 289.57455 * 1 2 3 25 25 H 1.09001 * 109.47063 * 49.57139 * 1 2 3 26 26 H 1.08998 * 109.47214 * 169.57130 * 1 2 3 27 27 H 1.09001 * 109.46846 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47166 * 299.99854 * 3 2 1 29 29 H 1.08999 * 109.46929 * 59.99992 * 3 2 1 30 30 H 0.97001 * 120.00021 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47589 * 180.02562 * 12 2 1 32 32 H 1.09008 * 109.47264 * 300.00389 * 12 2 1 33 33 H 0.96990 * 120.00088 * 244.99984 * 16 13 12 34 34 H 1.09003 * 109.47345 * 284.99795 * 17 16 13 35 35 H 1.09002 * 109.47561 * 44.99825 * 17 16 13 36 36 H 1.08992 * 110.51497 * 237.29524 * 20 18 17 37 37 H 1.08999 * 110.50472 * 0.02562 * 20 18 17 38 38 H 1.09004 * 110.37233 * 142.81226 * 21 20 18 39 39 H 1.08999 * 110.37457 * 265.04161 * 21 20 18 40 40 H 1.09008 * 110.37045 * 281.68234 * 23 22 21 41 41 H 1.08997 * 110.37292 * 159.34185 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.7215 -1.5362 1.1337 6 6 1.6120 -0.3060 2.4798 7 7 1.7079 -1.1263 3.5034 8 14 0.9062 1.4069 2.7188 9 1 2.0139 2.3747 2.9228 10 1 0.1267 1.7933 1.5154 11 1 0.0169 1.4145 3.9080 12 6 2.0400 -0.7213 -1.2492 13 16 1.4353 0.1338 -2.7303 14 8 0.0280 -0.0184 -2.8544 15 8 2.0480 1.4100 -2.8544 16 7 2.0542 -0.7401 -3.9936 17 6 1.6254 -2.1247 -4.2059 18 6 2.0349 -2.5759 -5.6093 19 1 3.0967 -2.3921 -5.7739 20 6 1.7062 -4.0716 -5.8147 21 6 0.6970 -4.0770 -6.9842 22 8 0.9555 -2.8496 -7.7003 23 6 1.1855 -1.8546 -6.6792 24 1 -0.3633 0.3443 0.9683 25 1 -0.3633 0.6664 -0.7823 26 1 -0.3633 -1.0107 -0.1860 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.4125 -0.8417 4.3824 31 1 3.1300 -0.7217 -1.2490 32 1 1.6766 -1.7490 -1.2492 33 1 2.7005 -0.3351 -4.5929 34 1 2.0981 -2.7692 -3.4647 35 1 0.5420 -2.1891 -4.1053 36 1 2.6049 -4.6268 -6.0831 37 1 1.2516 -4.4895 -4.9164 38 1 0.8702 -4.9373 -7.6308 39 1 -0.3244 -4.0885 -6.6040 40 1 0.2389 -1.5233 -6.2521 41 1 1.7339 -1.0076 -7.0914 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001561165006.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:50 Heat of formation + Delta-G solvation = -109.865381 kcal Electronic energy + Delta-G solvation = -22582.502160 eV Core-core repulsion = 19204.192936 eV Total energy + Delta-G solvation = -3378.309224 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.76299 -36.77379 -36.70705 -35.77818 -35.45102 -32.08661 -31.97702 -29.36828 -27.41722 -26.37055 -25.47555 -25.01868 -22.96685 -20.93962 -19.87571 -18.86265 -17.50879 -16.96155 -16.46065 -16.14178 -15.73397 -15.48157 -15.44018 -15.09648 -14.58075 -14.37924 -13.38888 -13.30326 -13.20510 -12.96192 -12.74967 -12.53777 -12.42366 -12.12738 -11.73187 -11.63192 -11.55638 -11.37303 -11.27443 -11.13946 -11.01678 -10.87087 -10.78533 -10.21322 -10.12062 -10.06002 -10.02510 -9.49165 -9.08131 -8.79563 -8.41489 -6.24697 -4.18135 0.66502 3.00484 3.23634 3.33457 3.36896 3.69151 4.10170 4.23464 4.32480 4.39453 4.52105 4.65237 4.79721 4.95663 5.03963 5.05571 5.23532 5.33864 5.38211 5.42574 5.48896 5.52076 5.58370 5.61273 5.75187 5.93266 5.98287 6.21209 6.30957 6.42068 6.48002 6.51483 6.69612 6.85729 6.96988 7.13569 7.29123 7.61513 8.35199 8.80654 9.41941 10.87701 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.031668 B = 0.004196 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.964604 B = 6671.587320 C = 7093.223110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.055 3.945 3 C -0.180 4.180 4 C -0.513 4.513 5 H 0.077 0.923 6 C 0.081 3.919 7 N -0.883 5.883 8 Si 0.864 3.136 9 H -0.280 1.280 10 H -0.243 1.243 11 H -0.298 1.298 12 C -0.574 4.574 13 S 2.591 3.409 14 O -0.963 6.963 15 O -0.964 6.964 16 N -1.129 6.129 17 C 0.122 3.878 18 C -0.128 4.128 19 H 0.092 0.908 20 C -0.151 4.151 21 C 0.043 3.957 22 O -0.378 6.378 23 C 0.047 3.953 24 H 0.066 0.934 25 H 0.037 0.963 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.266 0.734 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.413 0.587 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.585 -4.582 -17.653 18.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.052 3.948 3 C -0.237 4.237 4 C -0.551 4.551 5 H 0.095 0.905 6 C -0.123 4.123 7 N -0.518 5.518 8 Si 0.694 3.306 9 H -0.207 1.207 10 H -0.169 1.169 11 H -0.226 1.226 12 C -0.707 4.707 13 S 2.688 3.312 14 O -0.952 6.952 15 O -0.955 6.955 16 N -0.887 5.887 17 C -0.005 4.005 18 C -0.148 4.148 19 H 0.110 0.890 20 C -0.189 4.189 21 C -0.034 4.034 22 O -0.297 6.297 23 C -0.030 4.030 24 H 0.085 0.915 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.246 0.754 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.139 -3.913 -17.687 18.115 hybrid contribution 0.472 0.459 0.685 0.950 sum 0.332 -3.453 -17.001 17.352 Atomic orbital electron populations 1.22679 0.96922 1.01326 1.01757 1.18210 0.92496 0.91723 0.92323 1.22807 1.02235 0.97901 1.00802 1.20598 1.29417 1.17320 0.87806 0.90503 1.24933 0.94432 0.96926 0.95993 1.70000 1.46378 1.34365 1.01077 0.87632 0.79659 0.86103 0.77211 1.20675 1.16855 1.22609 1.30371 1.11850 1.12939 1.15554 1.05652 0.74991 0.74737 0.75795 1.93556 1.29727 1.86418 1.85534 1.93560 1.78093 1.38073 1.85754 1.55793 1.61097 1.24240 1.47561 1.21400 1.00721 0.81984 0.96396 1.22752 1.01710 0.95446 0.94899 0.88978 1.22983 1.00513 0.95650 0.99775 1.23442 0.98293 0.88213 0.93483 1.89122 1.91767 1.19055 1.29720 1.23568 0.99238 0.92034 0.88180 0.91528 0.94362 0.92347 0.91935 0.93433 0.92854 0.92411 0.85602 0.85690 0.75416 0.91057 0.89843 0.90158 0.89672 0.89097 0.91976 0.91376 0.88956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.76 6.89 37.16 0.26 -3.50 16 2 C 0.06 1.24 0.52 -155.66 -0.08 1.16 16 3 C -0.18 -3.98 7.34 37.16 0.27 -3.71 16 4 C -0.51 -13.56 8.60 -34.44 -0.30 -13.86 16 5 H 0.08 2.15 7.99 -52.49 -0.42 1.73 16 6 C 0.08 2.24 5.21 -17.82 -0.09 2.15 16 7 N -0.88 -25.87 13.96 55.43 0.77 -25.10 16 8 Si 0.86 21.04 22.95 -169.99 -3.90 17.14 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 10 H -0.24 -5.55 4.64 56.52 0.26 -5.28 16 11 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 12 C -0.57 -10.09 4.99 37.16 0.19 -9.90 16 13 S 2.59 42.32 4.50 -107.50 -0.48 41.84 16 14 O -0.96 -18.01 15.35 -57.54 -0.88 -18.90 16 15 O -0.96 -18.10 15.70 -57.54 -0.90 -19.00 16 16 N -1.13 -13.00 5.77 -10.61 -0.06 -13.06 16 17 C 0.12 1.19 5.28 -4.04 -0.02 1.17 16 18 C -0.13 -1.06 3.17 -89.05 -0.28 -1.35 16 19 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 20 C -0.15 -1.08 6.74 -25.16 -0.17 -1.24 16 21 C 0.04 0.34 7.63 37.93 0.29 0.63 16 22 O -0.38 -4.09 11.65 -35.23 -0.41 -4.50 16 23 C 0.05 0.45 7.08 37.93 0.27 0.72 16 24 H 0.07 1.53 4.02 -51.93 -0.21 1.32 16 25 H 0.04 0.79 6.23 -51.93 -0.32 0.47 16 26 H 0.06 1.22 8.11 -51.93 -0.42 0.79 16 27 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 28 H 0.05 0.98 5.46 -51.93 -0.28 0.70 16 29 H 0.05 1.21 2.68 -51.93 -0.14 1.07 16 30 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.13 2.00 8.14 -51.93 -0.42 1.57 16 32 H 0.12 1.98 8.14 -51.92 -0.42 1.55 16 33 H 0.41 3.92 8.61 -34.48 -0.30 3.62 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.87 7.52 -51.93 -0.39 0.48 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.53 7.73 -51.93 -0.40 0.13 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.70 7.74 -51.92 -0.40 0.30 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 319.87 15.07 4.82 4.82 Total: -1.00 -33.21 319.87 -7.09 -40.30 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -6.37 Total: 4.19 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: 0.33 Total: -27.73 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.71 Total: -38.16 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -2.20 Total: -42.40 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -3.90 Total: 17.14 kcal Atomic # 16 Polarization: 42.32 SS G_CDS: -0.48 Total: 41.84 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.21 -7.09 -40.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001561165006.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.565 kcal (2) G-P(sol) polarization free energy of solvation -33.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds