Wall clock time and date at job start Tue Mar 31 2020 07:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47253 * 2 1 4 4 C 1.50698 * 109.47128 * 119.99848 * 2 1 3 5 5 H 1.07996 * 120.00254 * 125.27000 * 4 2 1 6 6 C 1.37881 * 119.99901 * 305.27420 * 4 2 1 7 7 N 1.31522 * 119.99972 * 159.77740 * 6 4 2 8 8 Si 1.86794 * 120.00231 * 339.77804 * 6 4 2 9 9 H 1.48508 * 109.47086 * 275.51685 * 8 6 4 10 10 H 1.48496 * 109.46907 * 35.51232 * 8 6 4 11 11 H 1.48497 * 109.47460 * 155.51315 * 8 6 4 12 12 C 1.52995 * 109.47371 * 239.99840 * 2 1 3 13 13 S 1.81400 * 109.46932 * 59.99917 * 12 2 1 14 14 O 1.42101 * 110.54633 * 291.62421 * 13 12 2 15 15 O 1.42102 * 110.54312 * 68.37973 * 13 12 2 16 16 N 1.65609 * 104.44935 * 179.97438 * 13 12 2 17 17 C 1.46497 * 119.99563 * 65.00423 * 16 13 12 18 18 C 1.52997 * 109.47281 * 164.99751 * 17 16 13 19 19 H 1.09010 * 110.45329 * 52.39351 * 18 17 16 20 20 C 1.54511 * 110.51624 * 174.99460 * 18 17 16 21 21 C 1.54478 * 104.06100 * 118.64395 * 20 18 17 22 22 O 1.44435 * 104.80194 * 23.98341 * 21 20 18 23 23 C 1.44419 * 105.27397 * 319.48693 * 22 21 20 24 24 H 1.08998 * 109.47159 * 289.57455 * 1 2 3 25 25 H 1.09001 * 109.47063 * 49.57139 * 1 2 3 26 26 H 1.08998 * 109.47214 * 169.57130 * 1 2 3 27 27 H 1.09001 * 109.46846 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47166 * 299.99854 * 3 2 1 29 29 H 1.08999 * 109.46929 * 59.99992 * 3 2 1 30 30 H 0.97001 * 120.00021 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47589 * 180.02562 * 12 2 1 32 32 H 1.09008 * 109.47264 * 300.00389 * 12 2 1 33 33 H 0.96990 * 120.00088 * 244.99984 * 16 13 12 34 34 H 1.09003 * 109.47345 * 284.99795 * 17 16 13 35 35 H 1.09002 * 109.47561 * 44.99825 * 17 16 13 36 36 H 1.08992 * 110.51497 * 237.29524 * 20 18 17 37 37 H 1.08999 * 110.50472 * 0.02562 * 20 18 17 38 38 H 1.09004 * 110.37233 * 142.81226 * 21 20 18 39 39 H 1.08999 * 110.37457 * 265.04161 * 21 20 18 40 40 H 1.09008 * 110.37045 * 281.68234 * 23 22 21 41 41 H 1.08997 * 110.37292 * 159.34185 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.7215 -1.5362 1.1337 6 6 1.6120 -0.3060 2.4798 7 7 1.7079 -1.1263 3.5034 8 14 0.9062 1.4069 2.7188 9 1 2.0139 2.3747 2.9228 10 1 0.1267 1.7933 1.5154 11 1 0.0169 1.4145 3.9080 12 6 2.0400 -0.7213 -1.2492 13 16 1.4353 0.1338 -2.7303 14 8 0.0280 -0.0184 -2.8544 15 8 2.0480 1.4100 -2.8544 16 7 2.0542 -0.7401 -3.9936 17 6 1.6254 -2.1247 -4.2059 18 6 2.0349 -2.5759 -5.6093 19 1 3.0967 -2.3921 -5.7739 20 6 1.7062 -4.0716 -5.8147 21 6 0.6970 -4.0770 -6.9842 22 8 0.9555 -2.8496 -7.7003 23 6 1.1855 -1.8546 -6.6792 24 1 -0.3633 0.3443 0.9683 25 1 -0.3633 0.6664 -0.7823 26 1 -0.3633 -1.0107 -0.1860 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.4125 -0.8417 4.3824 31 1 3.1300 -0.7217 -1.2490 32 1 1.6766 -1.7490 -1.2492 33 1 2.7005 -0.3351 -4.5929 34 1 2.0981 -2.7692 -3.4647 35 1 0.5420 -2.1891 -4.1053 36 1 2.6049 -4.6268 -6.0831 37 1 1.2516 -4.4895 -4.9164 38 1 0.8702 -4.9373 -7.6308 39 1 -0.3244 -4.0885 -6.6040 40 1 0.2389 -1.5233 -6.2521 41 1 1.7339 -1.0076 -7.0914 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001561165006.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:50 Heat of formation + Delta-G solvation = -136.330841 kcal Electronic energy + Delta-G solvation = -22583.649789 eV Core-core repulsion = 19204.192936 eV Total energy + Delta-G solvation = -3379.456853 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.44474 -38.46022 -38.13021 -36.95286 -36.56669 -34.04533 -32.82963 -30.04145 -28.92226 -28.10818 -27.08906 -26.23989 -23.60343 -21.81254 -21.37777 -20.17365 -18.79984 -18.10693 -17.82268 -17.35662 -16.99169 -16.85880 -16.43689 -16.25261 -15.58124 -15.20770 -15.00092 -14.92673 -14.76231 -14.23542 -14.13733 -13.94502 -13.52054 -13.29969 -13.19301 -13.03242 -12.74460 -12.65713 -12.58470 -12.40122 -12.13189 -12.02744 -11.99908 -11.85606 -11.77937 -11.48192 -11.01042 -10.75520 -10.67055 -10.51208 -10.25879 -8.36595 -6.31465 -0.64310 1.30518 1.36881 1.42725 1.86029 2.30618 2.79636 2.98061 3.04517 3.30398 3.57890 3.76272 3.78893 3.90044 4.09098 4.22925 4.27334 4.31223 4.39467 4.50744 4.55975 4.62509 4.70559 4.72455 4.74709 4.81298 4.88192 4.90831 4.95790 4.98823 5.16391 5.18446 5.25835 5.42590 5.54281 5.65501 5.85930 6.12539 6.27297 6.70048 7.31250 8.79103 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.031668 B = 0.004196 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.964604 B = 6671.587320 C = 7093.223110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.044 3.956 3 C -0.186 4.186 4 C -0.508 4.508 5 H 0.050 0.950 6 C 0.031 3.969 7 N -0.929 5.929 8 Si 0.906 3.094 9 H -0.277 1.277 10 H -0.219 1.219 11 H -0.303 1.303 12 C -0.583 4.583 13 S 2.617 3.383 14 O -0.985 6.985 15 O -0.988 6.988 16 N -1.113 6.113 17 C 0.112 3.888 18 C -0.121 4.121 19 H 0.106 0.894 20 C -0.148 4.148 21 C 0.034 3.966 22 O -0.401 6.401 23 C 0.040 3.960 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.044 0.956 30 H 0.266 0.734 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.425 0.575 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.863 -4.568 -19.476 20.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.042 3.958 3 C -0.243 4.243 4 C -0.546 4.546 5 H 0.069 0.931 6 C -0.168 4.168 7 N -0.568 5.568 8 Si 0.734 3.266 9 H -0.203 1.203 10 H -0.143 1.143 11 H -0.232 1.232 12 C -0.715 4.715 13 S 2.713 3.287 14 O -0.975 6.975 15 O -0.978 6.978 16 N -0.874 5.874 17 C -0.014 4.014 18 C -0.142 4.142 19 H 0.124 0.876 20 C -0.186 4.186 21 C -0.042 4.042 22 O -0.320 6.320 23 C -0.037 4.037 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.261 0.739 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.123 0.877 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.145 -3.888 -19.522 19.906 hybrid contribution 0.419 0.344 1.148 1.270 sum 0.564 -3.543 -18.373 18.720 Atomic orbital electron populations 1.22693 0.96799 1.02149 1.01503 1.18203 0.92705 0.92149 0.92744 1.22832 1.02881 0.97541 1.01020 1.20886 1.27923 1.16329 0.89473 0.93139 1.25616 0.95390 0.99819 0.96010 1.70107 1.48854 1.36155 1.01637 0.86925 0.79454 0.82423 0.77777 1.20339 1.14275 1.23173 1.30387 1.13021 1.13572 1.14526 1.04624 0.74236 0.74145 0.75718 1.93530 1.31379 1.86724 1.85882 1.93522 1.78376 1.39782 1.86106 1.55339 1.61193 1.24925 1.45971 1.21673 1.00732 0.80972 0.98042 1.22723 1.02181 0.96014 0.93243 0.87556 1.23007 1.00889 0.94899 0.99795 1.23641 0.98734 0.87752 0.94078 1.89098 1.91928 1.20176 1.30819 1.23649 0.99108 0.92396 0.88532 0.92748 0.93031 0.91661 0.91181 0.92034 0.93723 0.92504 0.84024 0.84171 0.73870 0.89129 0.90448 0.88833 0.88690 0.87685 0.91910 0.92514 0.88324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.43 6.89 71.98 0.50 -6.93 16 2 C 0.04 1.92 0.52 -52.93 -0.03 1.90 16 3 C -0.19 -7.82 7.34 71.98 0.53 -7.29 16 4 C -0.51 -26.76 8.60 25.60 0.22 -26.54 16 5 H 0.05 2.86 7.99 -2.91 -0.02 2.84 16 6 C 0.03 1.73 5.21 84.65 0.44 2.17 16 7 N -0.93 -55.56 13.96 21.45 0.30 -55.26 16 8 Si 0.91 42.97 22.95 68.60 1.57 44.54 16 9 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 10 H -0.22 -9.46 4.64 99.48 0.46 -9.00 16 11 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 12 C -0.58 -19.23 4.99 71.98 0.36 -18.87 16 13 S 2.62 79.07 4.50 -56.49 -0.25 78.81 16 14 O -0.99 -34.75 15.35 -127.65 -1.96 -36.71 16 15 O -0.99 -34.66 15.70 -127.65 -2.00 -36.66 16 16 N -1.11 -22.43 5.77 -187.49 -1.08 -23.51 16 17 C 0.11 1.87 5.28 86.38 0.46 2.32 16 18 C -0.12 -1.67 3.17 -9.78 -0.03 -1.71 16 19 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 20 C -0.15 -1.68 6.74 31.61 0.21 -1.47 16 21 C 0.03 0.48 7.63 72.48 0.55 1.03 16 22 O -0.40 -8.08 11.65 -148.98 -1.74 -9.82 16 23 C 0.04 0.70 7.08 72.48 0.51 1.21 16 24 H 0.05 2.42 4.02 -2.39 -0.01 2.41 16 25 H 0.05 2.04 6.23 -2.39 -0.01 2.02 16 26 H 0.06 2.63 8.11 -2.39 -0.02 2.61 16 27 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 28 H 0.06 2.41 5.46 -2.39 -0.01 2.39 16 29 H 0.04 1.93 2.68 -2.39 -0.01 1.93 16 30 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 31 H 0.14 4.16 8.14 -2.39 -0.02 4.14 16 32 H 0.14 4.11 8.14 -2.39 -0.02 4.10 16 33 H 0.43 6.76 8.61 -96.75 -0.83 5.93 16 34 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.08 1.43 7.52 -2.39 -0.02 1.41 16 36 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.09 0.91 7.73 -2.39 -0.02 0.89 16 38 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.06 1.10 7.74 -2.38 -0.02 1.08 16 41 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -70.83 319.87 -1.48 -72.32 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -0.05 Total: 20.47 kcal Atomic # 6 Polarization: -57.90 SS G_CDS: 3.72 Total: -54.18 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -0.78 Total: -78.77 kcal Atomic # 8 Polarization: -77.49 SS G_CDS: -5.70 Total: -83.19 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.57 Total: 44.54 kcal Atomic # 16 Polarization: 79.07 SS G_CDS: -0.25 Total: 78.81 kcal Total: -70.83 -1.48 -72.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001561165006.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.015 kcal (2) G-P(sol) polarization free energy of solvation -70.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds