Wall clock time and date at job start Tue Mar 31 2020 06:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46667 * 2 1 4 4 C 1.50698 * 109.47152 * 239.99869 * 2 1 3 5 5 H 1.08005 * 120.00111 * 241.34694 * 4 2 1 6 6 C 1.37875 * 119.99787 * 61.34516 * 4 2 1 7 7 N 1.31525 * 119.99835 * 193.97683 * 6 4 2 8 8 Si 1.86797 * 120.00382 * 13.97713 * 6 4 2 9 9 H 1.48497 * 109.47094 * 84.54669 * 8 6 4 10 10 H 1.48504 * 109.47494 * 204.54933 * 8 6 4 11 11 H 1.48503 * 109.46849 * 324.54974 * 8 6 4 12 12 C 1.53000 * 109.47238 * 119.99943 * 2 1 3 13 13 N 1.46507 * 109.46969 * 299.99922 * 12 2 1 14 14 C 1.34773 * 119.99974 * 180.02562 * 13 12 2 15 15 O 1.21558 * 120.00085 * 359.97438 * 14 13 12 16 16 C 1.47853 * 120.00055 * 180.02562 * 14 13 12 17 17 C 1.39719 * 120.07400 * 359.72027 * 16 14 13 18 18 C 1.38061 * 120.15455 * 179.72017 * 17 16 14 19 19 C 1.38083 * 120.30768 * 0.55955 * 18 17 16 20 20 C 1.39715 * 120.13800 * 359.72368 * 19 18 17 21 21 C 1.47738 * 120.08066 * 180.02562 * 20 19 18 22 22 O 1.21470 * 119.99889 * 179.97438 * 21 20 19 23 23 O 1.34702 * 119.99952 * 359.97438 * 21 20 19 24 24 C 1.39284 * 120.07515 * 179.97438 * 16 14 13 25 25 H 1.08997 * 109.47311 * 309.36749 * 1 2 3 26 26 H 1.08994 * 109.47494 * 69.37375 * 1 2 3 27 27 H 1.09006 * 109.46566 * 189.37201 * 1 2 3 28 28 H 1.09002 * 109.47041 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46893 * 299.99732 * 3 2 1 30 30 H 1.08999 * 109.47257 * 60.00006 * 3 2 1 31 31 H 0.96998 * 119.99788 * 180.02562 * 7 6 4 32 32 H 1.08996 * 109.47154 * 59.99850 * 12 2 1 33 33 H 1.08999 * 109.47339 * 180.02562 * 12 2 1 34 34 H 0.96995 * 119.99757 * 0.02562 * 13 12 2 35 35 H 1.07999 * 119.91372 * 359.97438 * 17 16 14 36 36 H 1.08008 * 119.84831 * 180.25768 * 18 17 16 37 37 H 1.07997 * 119.93300 * 179.69990 * 19 18 17 38 38 H 0.96701 * 117.00224 * 180.02562 * 23 21 20 39 39 H 1.08003 * 120.14660 * 359.97438 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6352 -1.6011 -1.1315 6 6 1.7223 -0.2234 -2.4825 7 7 1.9158 -0.9727 -3.5460 8 14 1.0275 1.5005 -2.6685 9 1 2.1416 2.4816 -2.7084 10 1 0.2468 1.5864 -3.9288 11 1 0.1417 1.8042 -1.5159 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0305 2.4454 14 6 1.8777 -0.4907 3.6695 15 8 2.5766 -1.4790 3.7811 16 6 1.3845 0.2060 4.8767 17 6 0.5850 1.3449 4.7503 18 6 0.1187 1.9934 5.8764 19 6 0.4478 1.5290 7.1345 20 6 1.2512 0.3947 7.2755 21 6 1.6021 -0.1015 8.6221 22 8 2.3003 -1.0881 8.7430 23 8 1.1476 0.5402 9.7158 24 6 1.7200 -0.2684 6.1425 25 1 -0.3634 0.6518 0.7944 26 1 -0.3634 0.3620 -0.9617 27 1 -0.3633 -1.0140 0.1674 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6980 -0.6299 -4.4268 32 1 1.6767 -1.7489 1.2493 33 1 3.1300 -0.7208 1.2495 34 1 0.9938 0.7579 2.3564 35 1 0.3280 1.7163 3.7693 36 1 -0.5023 2.8710 5.7729 37 1 0.0837 2.0438 8.0113 38 1 1.4039 0.1784 10.5753 39 1 2.3407 -1.1462 6.2458 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588754615.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:06 Heat of formation + Delta-G solvation = -88.603815 kcal Electronic energy + Delta-G solvation = -22603.235130 eV Core-core repulsion = 19090.403925 eV Total energy + Delta-G solvation = -3512.831205 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.83000 -39.88404 -38.30760 -36.74355 -36.43042 -33.58759 -32.03980 -31.45818 -31.24258 -26.52076 -26.32711 -25.07068 -25.02830 -23.47746 -21.72634 -20.40799 -19.39951 -18.43462 -18.07503 -16.57988 -16.40172 -16.09645 -15.97144 -15.57982 -15.27168 -15.00499 -14.65886 -14.28857 -13.83928 -13.49089 -13.44643 -12.98912 -12.76398 -12.65310 -12.34715 -12.25496 -12.10203 -11.91117 -11.68149 -11.37526 -10.97418 -10.49687 -10.38188 -10.22797 -10.12507 -9.77715 -9.50546 -9.37947 -9.17950 -8.74134 -8.63482 -8.49556 -6.18389 -4.16130 0.22402 0.72443 2.08691 2.58422 2.92849 3.19988 3.26673 3.35332 3.43478 3.66292 4.31529 4.41768 4.50328 4.50691 4.79412 4.86421 5.09558 5.12035 5.30961 5.52137 5.69297 5.83286 5.91229 5.93313 5.97978 5.99677 6.10624 6.27948 6.33564 6.42106 6.45200 6.56620 6.63111 6.67445 6.88497 7.15296 7.36920 7.52536 7.66988 7.77703 8.37815 8.44879 8.87078 9.45023 10.94695 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.036223 B = 0.003239 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.801716 B = 8643.324741 C = 9208.891424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.028 3.972 3 C -0.149 4.149 4 C -0.514 4.514 5 H 0.077 0.923 6 C 0.076 3.924 7 N -0.890 5.890 8 Si 0.885 3.115 9 H -0.285 1.285 10 H -0.305 1.305 11 H -0.249 1.249 12 C 0.141 3.859 13 N -0.714 5.714 14 C 0.548 3.452 15 O -0.537 6.537 16 C -0.136 4.136 17 C -0.051 4.051 18 C -0.139 4.139 19 C -0.043 4.043 20 C -0.139 4.139 21 C 0.528 3.472 22 O -0.507 6.507 23 O -0.513 6.513 24 C 0.002 3.998 25 H 0.020 0.980 26 H 0.057 0.943 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.028 0.972 31 H 0.265 0.735 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.395 0.605 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.415 0.585 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.956 9.318 22.073 24.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 C -0.205 4.205 4 C -0.552 4.552 5 H 0.095 0.905 6 C -0.127 4.127 7 N -0.527 5.527 8 Si 0.718 3.282 9 H -0.213 1.213 10 H -0.234 1.234 11 H -0.175 1.175 12 C 0.019 3.981 13 N -0.365 5.365 14 C 0.334 3.666 15 O -0.415 6.415 16 C -0.139 4.139 17 C -0.070 4.070 18 C -0.156 4.156 19 C -0.061 4.061 20 C -0.140 4.140 21 C 0.372 3.628 22 O -0.396 6.396 23 O -0.325 6.325 24 C -0.017 4.017 25 H 0.039 0.961 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.231 0.769 35 H 0.153 0.847 36 H 0.157 0.843 37 H 0.160 0.840 38 H 0.274 0.726 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.373 8.448 21.548 23.761 hybrid contribution -0.428 1.159 0.190 1.250 sum -5.801 9.607 21.738 24.464 Atomic orbital electron populations 1.22311 0.97816 0.99915 0.99983 1.18729 0.92533 0.92269 0.93753 1.22376 1.01343 0.98281 0.98540 1.20705 1.34177 1.12397 0.87931 0.90463 1.24978 0.94658 0.97308 0.95778 1.69953 1.48044 1.35905 0.98750 0.87293 0.79333 0.85546 0.76023 1.21319 1.23362 1.17532 1.21598 0.98855 0.95946 0.81728 1.46243 1.52536 1.31762 1.05993 1.18095 0.80956 0.84316 0.83229 1.90794 1.38042 1.25984 1.86711 1.20080 1.01957 0.97797 0.94062 1.21715 0.92767 0.92670 0.99814 1.21134 1.01614 1.01228 0.91667 1.21635 0.92819 0.93107 0.98545 1.18947 1.05429 0.99794 0.89812 1.20799 0.76349 0.80456 0.85172 1.90933 1.35669 1.25646 1.87348 1.84529 1.71995 1.58118 1.17895 1.21400 0.93440 0.97493 0.89379 0.96062 0.92408 0.93280 0.92657 0.93935 0.95303 0.92504 0.91512 0.91620 0.76862 0.84668 0.84290 0.84009 0.72574 0.83010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 7.53 37.16 0.28 -2.51 16 2 C 0.03 0.60 0.50 -155.66 -0.08 0.52 16 3 C -0.15 -2.89 7.52 37.16 0.28 -2.61 16 4 C -0.51 -13.54 8.62 -34.44 -0.30 -13.84 16 5 H 0.08 2.24 7.99 -52.48 -0.42 1.82 16 6 C 0.08 2.06 5.32 -17.82 -0.09 1.97 16 7 N -0.89 -26.30 13.96 55.43 0.77 -25.52 16 8 Si 0.89 20.58 22.79 -169.99 -3.87 16.70 16 9 H -0.29 -6.62 7.10 56.52 0.40 -6.22 16 10 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 11 H -0.25 -5.19 4.65 56.52 0.26 -4.93 16 12 C 0.14 2.74 4.49 -4.04 -0.02 2.72 16 13 N -0.71 -11.30 4.95 -61.24 -0.30 -11.60 16 14 C 0.55 8.94 7.77 -12.33 -0.10 8.84 16 15 O -0.54 -10.83 16.34 5.31 0.09 -10.74 16 16 C -0.14 -1.72 5.87 -105.02 -0.62 -2.34 16 17 C -0.05 -0.48 9.54 -39.09 -0.37 -0.85 16 18 C -0.14 -1.03 10.02 -39.70 -0.40 -1.42 16 19 C -0.04 -0.34 9.61 -39.09 -0.38 -0.71 16 20 C -0.14 -1.45 5.87 -105.03 -0.62 -2.07 16 21 C 0.53 5.49 8.27 34.61 0.29 5.78 16 22 O -0.51 -6.98 17.13 -19.24 -0.33 -7.31 16 23 O -0.51 -3.40 12.67 -40.50 -0.51 -3.91 16 24 C 0.00 0.02 9.14 -38.76 -0.35 -0.33 16 25 H 0.02 0.33 7.13 -51.93 -0.37 -0.04 16 26 H 0.06 1.21 4.30 -51.93 -0.22 0.98 16 27 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 28 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.04 0.88 2.25 -51.93 -0.12 0.76 16 30 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.40 5.23 4.28 -40.82 -0.17 5.05 16 35 H 0.14 1.04 6.39 -52.49 -0.34 0.71 16 36 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 37 H 0.14 0.79 7.60 -52.49 -0.40 0.39 16 38 H 0.42 0.95 9.11 45.56 0.42 1.37 16 39 H 0.15 2.18 7.23 -52.48 -0.38 1.80 16 LS Contribution 318.82 15.07 4.80 4.80 Total: -1.00 -33.62 318.82 -5.57 -39.19 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -3.75 Total: 5.24 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -2.47 Total: -6.85 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.47 Total: -37.12 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.76 Total: -21.96 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -3.87 Total: 16.70 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.62 -5.57 -39.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588754615.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.411 kcal (2) G-P(sol) polarization free energy of solvation -33.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds