Wall clock time and date at job start Tue Mar 31 2020 06:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46667 * 2 1 4 4 C 1.50698 * 109.47152 * 239.99869 * 2 1 3 5 5 H 1.08005 * 120.00111 * 241.34694 * 4 2 1 6 6 C 1.37875 * 119.99787 * 61.34516 * 4 2 1 7 7 N 1.31525 * 119.99835 * 193.97683 * 6 4 2 8 8 Si 1.86797 * 120.00382 * 13.97713 * 6 4 2 9 9 H 1.48497 * 109.47094 * 84.54669 * 8 6 4 10 10 H 1.48504 * 109.47494 * 204.54933 * 8 6 4 11 11 H 1.48503 * 109.46849 * 324.54974 * 8 6 4 12 12 C 1.53000 * 109.47238 * 119.99943 * 2 1 3 13 13 N 1.46507 * 109.46969 * 299.99922 * 12 2 1 14 14 C 1.34773 * 119.99974 * 180.02562 * 13 12 2 15 15 O 1.21558 * 120.00085 * 359.97438 * 14 13 12 16 16 C 1.47853 * 120.00055 * 180.02562 * 14 13 12 17 17 C 1.39719 * 120.07400 * 359.72027 * 16 14 13 18 18 C 1.38061 * 120.15455 * 179.72017 * 17 16 14 19 19 C 1.38083 * 120.30768 * 0.55955 * 18 17 16 20 20 C 1.39715 * 120.13800 * 359.72368 * 19 18 17 21 21 C 1.47738 * 120.08066 * 180.02562 * 20 19 18 22 22 O 1.21470 * 119.99889 * 179.97438 * 21 20 19 23 23 O 1.34702 * 119.99952 * 359.97438 * 21 20 19 24 24 C 1.39284 * 120.07515 * 179.97438 * 16 14 13 25 25 H 1.08997 * 109.47311 * 309.36749 * 1 2 3 26 26 H 1.08994 * 109.47494 * 69.37375 * 1 2 3 27 27 H 1.09006 * 109.46566 * 189.37201 * 1 2 3 28 28 H 1.09002 * 109.47041 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46893 * 299.99732 * 3 2 1 30 30 H 1.08999 * 109.47257 * 60.00006 * 3 2 1 31 31 H 0.96998 * 119.99788 * 180.02562 * 7 6 4 32 32 H 1.08996 * 109.47154 * 59.99850 * 12 2 1 33 33 H 1.08999 * 109.47339 * 180.02562 * 12 2 1 34 34 H 0.96995 * 119.99757 * 0.02562 * 13 12 2 35 35 H 1.07999 * 119.91372 * 359.97438 * 17 16 14 36 36 H 1.08008 * 119.84831 * 180.25768 * 18 17 16 37 37 H 1.07997 * 119.93300 * 179.69990 * 19 18 17 38 38 H 0.96701 * 117.00224 * 180.02562 * 23 21 20 39 39 H 1.08003 * 120.14660 * 359.97438 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6352 -1.6011 -1.1315 6 6 1.7223 -0.2234 -2.4825 7 7 1.9158 -0.9727 -3.5460 8 14 1.0275 1.5005 -2.6685 9 1 2.1416 2.4816 -2.7084 10 1 0.2468 1.5864 -3.9288 11 1 0.1417 1.8042 -1.5159 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0305 2.4454 14 6 1.8777 -0.4907 3.6695 15 8 2.5766 -1.4790 3.7811 16 6 1.3845 0.2060 4.8767 17 6 0.5850 1.3449 4.7503 18 6 0.1187 1.9934 5.8764 19 6 0.4478 1.5290 7.1345 20 6 1.2512 0.3947 7.2755 21 6 1.6021 -0.1015 8.6221 22 8 2.3003 -1.0881 8.7430 23 8 1.1476 0.5402 9.7158 24 6 1.7200 -0.2684 6.1425 25 1 -0.3634 0.6518 0.7944 26 1 -0.3634 0.3620 -0.9617 27 1 -0.3633 -1.0140 0.1674 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6980 -0.6299 -4.4268 32 1 1.6767 -1.7489 1.2493 33 1 3.1300 -0.7208 1.2495 34 1 0.9938 0.7579 2.3564 35 1 0.3280 1.7163 3.7693 36 1 -0.5023 2.8710 5.7729 37 1 0.0837 2.0438 8.0113 38 1 1.4039 0.1784 10.5753 39 1 2.3407 -1.1462 6.2458 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588754615.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:05 Heat of formation + Delta-G solvation = -114.444712 kcal Electronic energy + Delta-G solvation = -22604.355675 eV Core-core repulsion = 19090.403925 eV Total energy + Delta-G solvation = -3513.951750 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.68811 -40.98111 -39.30797 -38.31683 -37.14610 -35.15750 -33.64760 -32.47285 -32.20178 -28.04369 -27.80600 -27.00006 -25.79915 -24.59292 -22.48202 -21.54215 -21.01292 -19.51825 -18.87339 -18.11287 -17.58754 -17.12685 -16.91125 -16.77553 -16.75782 -16.39700 -15.64278 -15.23756 -15.00497 -14.86817 -14.72915 -14.50063 -14.21992 -13.99279 -13.73755 -13.66266 -13.00861 -12.94691 -12.63888 -12.50561 -12.38837 -12.16809 -11.94372 -11.78650 -11.76112 -11.18681 -11.00367 -10.61494 -10.38272 -10.32793 -10.19902 -9.96798 -8.29330 -6.31900 -0.51817 -0.11948 1.31947 1.37667 1.40129 1.53467 1.86633 1.89287 2.22386 2.36409 2.76163 3.06844 3.56898 3.77290 3.85638 4.01550 4.07208 4.09249 4.31387 4.35360 4.41037 4.63402 4.76923 4.81933 4.84123 4.86730 4.94212 5.06433 5.12394 5.15505 5.16622 5.25002 5.38161 5.51633 5.51791 5.67723 5.72278 5.80825 6.29915 6.53599 6.72929 6.90736 7.17415 7.33144 8.88110 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.036223 B = 0.003239 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.801716 B = 8643.324741 C = 9208.891424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.028 3.972 3 C -0.149 4.149 4 C -0.521 4.521 5 H 0.024 0.976 6 C 0.014 3.986 7 N -0.949 5.949 8 Si 0.947 3.053 9 H -0.281 1.281 10 H -0.317 1.317 11 H -0.197 1.197 12 C 0.155 3.845 13 N -0.700 5.700 14 C 0.548 3.452 15 O -0.589 6.589 16 C -0.155 4.155 17 C -0.042 4.042 18 C -0.122 4.122 19 C -0.022 4.022 20 C -0.151 4.151 21 C 0.534 3.466 22 O -0.554 6.554 23 O -0.496 6.496 24 C -0.019 4.019 25 H 0.071 0.929 26 H 0.047 0.953 27 H 0.039 0.961 28 H 0.045 0.955 29 H 0.037 0.963 30 H 0.078 0.922 31 H 0.264 0.736 32 H 0.041 0.959 33 H 0.043 0.957 34 H 0.413 0.587 35 H 0.161 0.839 36 H 0.185 0.815 37 H 0.175 0.825 38 H 0.435 0.565 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.043 14.177 24.774 29.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 C -0.206 4.206 4 C -0.559 4.559 5 H 0.043 0.957 6 C -0.183 4.183 7 N -0.588 5.588 8 Si 0.776 3.224 9 H -0.209 1.209 10 H -0.246 1.246 11 H -0.120 1.120 12 C 0.031 3.969 13 N -0.352 5.352 14 C 0.336 3.664 15 O -0.471 6.471 16 C -0.158 4.158 17 C -0.060 4.060 18 C -0.139 4.139 19 C -0.040 4.040 20 C -0.152 4.152 21 C 0.380 3.620 22 O -0.446 6.446 23 O -0.310 6.310 24 C -0.038 4.038 25 H 0.090 0.910 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.252 0.748 35 H 0.179 0.821 36 H 0.202 0.798 37 H 0.192 0.808 38 H 0.298 0.702 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.494 13.355 24.321 29.017 hybrid contribution 0.566 -0.433 -0.509 0.876 sum -7.928 12.921 23.811 28.228 Atomic orbital electron populations 1.22241 0.95764 1.00778 1.01210 1.18656 0.94010 0.93221 0.91401 1.22317 1.01056 0.96591 1.00592 1.21043 1.33027 1.11110 0.90725 0.95734 1.25929 0.95372 1.01927 0.95094 1.70130 1.50726 1.38459 0.99466 0.86308 0.79485 0.79476 0.77179 1.20858 1.24623 1.12012 1.21112 0.97518 0.95124 0.83100 1.45898 1.52641 1.31986 1.04658 1.18717 0.79806 0.83643 0.84238 1.90769 1.40405 1.28482 1.87454 1.19719 1.04611 0.99732 0.91756 1.22009 0.91100 0.90863 1.02037 1.21629 1.00458 1.01589 0.90251 1.22058 0.90412 0.91198 1.00340 1.19007 1.06351 1.00877 0.88958 1.20864 0.75408 0.79708 0.86058 1.90923 1.37902 1.27779 1.88013 1.84469 1.71039 1.57209 1.18237 1.21206 0.94379 0.97405 0.90813 0.91017 0.93405 0.94181 0.93574 0.94438 0.90299 0.92675 0.94019 0.93813 0.74756 0.82140 0.79792 0.80761 0.70228 0.86462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.10 7.53 71.98 0.54 -4.56 16 2 C 0.03 1.16 0.50 -52.93 -0.03 1.13 16 3 C -0.15 -5.24 7.52 71.98 0.54 -4.70 16 4 C -0.52 -28.53 8.62 25.60 0.22 -28.31 16 5 H 0.02 1.54 7.99 -2.91 -0.02 1.52 16 6 C 0.01 0.78 5.32 84.65 0.45 1.23 16 7 N -0.95 -58.76 13.96 21.45 0.30 -58.46 16 8 Si 0.95 41.41 22.79 68.60 1.56 42.98 16 9 H -0.28 -12.06 7.10 99.48 0.71 -11.36 16 10 H -0.32 -14.41 7.11 99.48 0.71 -13.70 16 11 H -0.20 -6.99 4.65 99.48 0.46 -6.53 16 12 C 0.16 6.14 4.49 86.38 0.39 6.53 16 13 N -0.70 -20.90 4.95 -465.95 -2.31 -23.21 16 14 C 0.55 17.86 7.77 86.79 0.67 18.53 16 15 O -0.59 -25.26 16.34 -3.90 -0.06 -25.32 16 16 C -0.16 -3.70 5.87 -20.12 -0.12 -3.82 16 17 C -0.04 -0.58 9.54 22.59 0.22 -0.36 16 18 C -0.12 -1.01 10.02 22.19 0.22 -0.79 16 19 C -0.02 -0.23 9.61 22.59 0.22 -0.02 16 20 C -0.15 -2.86 5.87 -20.13 -0.12 -2.97 16 21 C 0.53 10.45 8.27 70.33 0.58 11.03 16 22 O -0.55 -15.66 17.13 19.93 0.34 -15.32 16 23 O -0.50 -5.05 12.67 -56.12 -0.71 -5.76 16 24 C -0.02 -0.47 9.14 22.80 0.21 -0.27 16 25 H 0.07 1.85 7.13 -2.39 -0.02 1.83 16 26 H 0.05 1.81 4.30 -2.39 -0.01 1.80 16 27 H 0.04 1.49 8.12 -2.38 -0.02 1.47 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.04 1.37 2.25 -2.39 -0.01 1.37 16 30 H 0.08 1.99 6.86 -2.39 -0.02 1.97 16 31 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 32 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.41 8.99 4.28 -92.71 -0.40 8.59 16 35 H 0.16 1.37 6.39 -2.91 -0.02 1.35 16 36 H 0.18 0.04 8.06 -2.91 -0.02 0.02 16 37 H 0.17 0.78 7.60 -2.91 -0.02 0.75 16 38 H 0.44 0.79 9.11 -74.06 -0.67 0.12 16 39 H 0.12 3.74 7.23 -2.91 -0.02 3.72 16 Total: -1.00 -82.42 318.82 2.92 -79.51 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -0.20 Total: 12.93 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 4.00 Total: -7.34 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -2.01 Total: -81.67 kcal Atomic # 8 Polarization: -45.97 SS G_CDS: -0.43 Total: -46.41 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 1.56 Total: 42.98 kcal Total: -82.42 2.92 -79.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588754615.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.939 kcal (2) G-P(sol) polarization free energy of solvation -82.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds