Wall clock time and date at job start Tue Mar 31 2020 06:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47102 * 2 1 4 4 C 1.53004 * 109.46649 * 240.00292 * 2 1 3 5 5 H 1.08996 * 109.47313 * 59.99678 * 4 2 1 6 6 C 1.50703 * 109.46924 * 299.99669 * 4 2 1 7 7 O 1.20819 * 120.00522 * 0.02562 * 6 4 2 8 8 O 1.34230 * 119.99480 * 179.97438 * 6 4 2 9 9 C 1.50699 * 109.46755 * 179.97438 * 4 2 1 10 10 O 1.21282 * 120.00437 * 0.02562 * 9 4 2 11 11 N 1.34780 * 120.00002 * 179.97438 * 9 4 2 12 12 C 1.39239 * 119.99974 * 176.72929 * 11 9 4 13 13 C 1.39480 * 119.83308 * 217.45657 * 12 11 9 14 14 C 1.36377 * 120.16778 * 179.71938 * 13 12 11 15 15 C 1.40877 * 119.82549 * 0.58154 * 14 13 12 16 16 C 1.41153 * 120.16274 * 179.67606 * 15 14 13 17 17 H 1.07994 * 119.99878 * 157.80256 * 16 15 14 18 18 C 1.39905 * 119.99684 * 337.80624 * 16 15 14 19 19 N 1.30868 * 120.00284 * 327.74478 * 18 16 15 20 20 Si 1.86798 * 119.99699 * 147.74999 * 18 16 15 21 21 H 1.48499 * 109.47153 * 94.98292 * 20 18 16 22 22 H 1.48505 * 109.47215 * 214.98229 * 20 18 16 23 23 H 1.48501 * 109.47469 * 334.98117 * 20 18 16 24 24 C 1.40874 * 119.67025 * 359.69480 * 15 14 13 25 25 C 1.36371 * 119.82830 * 0.02562 * 24 15 14 26 26 H 1.08996 * 109.47526 * 59.99900 * 1 2 3 27 27 H 1.09007 * 109.47315 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46922 * 299.99536 * 1 2 3 29 29 H 1.08999 * 109.46880 * 120.00436 * 2 1 3 30 30 H 1.09004 * 109.46854 * 60.00422 * 3 2 1 31 31 H 1.08998 * 109.46979 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47367 * 300.00435 * 3 2 1 33 33 H 0.96705 * 117.00027 * 179.97438 * 8 6 4 34 34 H 0.96996 * 119.99655 * 356.74079 * 11 9 4 35 35 H 1.08000 * 119.91794 * 0.02562 * 13 12 11 36 36 H 1.07990 * 120.08625 * 180.25677 * 14 13 12 37 37 H 0.97003 * 120.00425 * 180.02562 * 19 18 16 38 38 H 1.08003 * 120.08161 * 179.97438 * 24 15 14 39 39 H 1.07997 * 119.91102 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.6765 -0.2074 -2.1393 6 6 1.5376 -2.1421 -1.2493 7 8 0.8427 -2.5372 -0.3434 8 8 1.8614 -2.9683 -2.2564 9 6 3.5469 -0.7207 -1.2497 10 8 4.1534 -0.1956 -0.3401 11 7 4.2208 -1.3046 -2.2604 12 6 5.6114 -1.2450 -2.2960 13 6 6.2685 -1.0941 -3.5170 14 6 7.6300 -1.0292 -3.5592 15 6 8.3735 -1.1274 -2.3666 16 6 9.7833 -1.0680 -2.4028 17 1 10.3347 -0.7852 -1.5183 18 6 10.4662 -1.3754 -3.5845 19 7 9.9792 -2.2678 -4.4086 20 14 12.0734 -0.5121 -3.9859 21 1 13.2121 -1.3481 -3.5280 22 1 12.1706 -0.3041 -5.4531 23 1 12.1152 0.8021 -3.2959 24 6 7.7029 -1.2856 -1.1379 25 6 6.3407 -1.3430 -1.1111 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9562 0.8901 31 1 3.1300 1.4424 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.5160 -3.8705 -2.2124 34 1 3.7369 -1.7662 -2.9630 35 1 5.6973 -1.0234 -4.4309 36 1 8.1372 -0.9081 -4.5049 37 1 10.4529 -2.4812 -5.2277 38 1 8.2663 -1.3620 -0.2196 39 1 5.8252 -1.4647 -0.1699 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588807944.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:10 Heat of formation + Delta-G solvation = -115.508999 kcal Electronic energy + Delta-G solvation = -23058.214377 eV Core-core repulsion = 19544.216476 eV Total energy + Delta-G solvation = -3513.997901 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.06087 -39.42258 -37.53219 -36.60776 -35.24495 -34.41971 -33.11348 -30.09981 -29.53482 -28.52736 -27.08203 -24.94181 -22.78509 -21.94340 -21.05992 -20.17867 -19.50253 -18.33633 -17.50597 -17.28204 -17.07376 -16.28633 -15.45041 -15.24317 -14.74022 -14.49080 -14.02778 -13.93186 -13.58617 -13.12210 -12.77277 -12.46387 -12.34807 -12.14682 -12.11711 -11.96420 -11.82117 -11.59129 -11.30607 -11.17224 -11.15031 -10.95343 -10.78354 -10.56816 -10.44945 -10.11817 -9.77152 -9.46859 -9.06765 -8.70564 -7.58433 -7.18592 -6.92058 -4.30819 1.87002 2.41099 2.71433 2.99410 3.03505 3.07591 3.12274 3.32210 3.64205 3.86738 4.32132 4.47325 4.75908 5.02789 5.07386 5.26167 5.35615 5.54895 5.64437 5.66754 5.86251 5.98518 6.10035 6.16436 6.26502 6.36204 6.40990 6.55030 6.75813 6.92334 6.96932 7.10173 7.24783 7.52936 7.64020 7.66204 7.83626 7.98495 8.20963 8.23556 8.51042 8.67640 8.80554 8.95394 9.98654 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.032897 B = 0.003463 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.928897 B = 8084.119180 C = 8516.902881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.061 4.061 3 C -0.159 4.159 4 C -0.099 4.099 5 H 0.131 0.869 6 C 0.490 3.510 7 O -0.500 6.500 8 O -0.514 6.514 9 C 0.505 3.495 10 O -0.514 6.514 11 N -0.637 5.637 12 C -0.026 4.026 13 C -0.099 4.099 14 C -0.171 4.171 15 C 0.114 3.886 16 C -0.464 4.464 17 H 0.082 0.918 18 C 0.088 3.912 19 N -0.768 5.768 20 Si 0.896 3.104 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.257 1.257 24 C -0.224 4.224 25 C -0.064 4.064 26 H 0.049 0.951 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.048 0.952 33 H 0.414 0.586 34 H 0.400 0.600 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.284 0.716 38 H 0.095 0.905 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.184 1.219 0.082 14.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.080 4.080 3 C -0.216 4.216 4 C -0.121 4.121 5 H 0.149 0.851 6 C 0.331 3.669 7 O -0.387 6.387 8 O -0.326 6.326 9 C 0.289 3.711 10 O -0.390 6.390 11 N -0.280 5.280 12 C -0.118 4.118 13 C -0.119 4.119 14 C -0.191 4.191 15 C 0.111 3.889 16 C -0.492 4.492 17 H 0.100 0.900 18 C -0.134 4.134 19 N -0.391 5.391 20 Si 0.720 3.280 21 H -0.194 1.194 22 H -0.199 1.199 23 H -0.181 1.181 24 C -0.244 4.244 25 C -0.084 4.084 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.274 0.726 34 H 0.236 0.764 35 H 0.108 0.892 36 H 0.125 0.875 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.763 1.738 0.736 13.892 hybrid contribution 0.183 -0.592 -0.786 1.000 sum -13.580 1.146 -0.050 13.628 Atomic orbital electron populations 1.22131 0.94516 1.03518 1.01640 1.20763 0.95623 0.96607 0.95039 1.22090 1.04588 0.93766 1.01169 1.21481 0.95554 0.90458 1.04604 0.85101 1.22974 0.76979 0.88003 0.78905 1.90666 1.35583 1.76530 1.35957 1.84484 1.72307 1.27827 1.47999 1.19745 0.87520 0.80002 0.83820 1.90659 1.68645 1.44610 1.35121 1.42985 1.06444 1.52774 1.25817 1.17039 0.79932 1.20150 0.94632 1.20163 0.95010 1.02393 0.94316 1.20621 0.91813 1.08228 0.98446 1.17601 0.93225 0.87158 0.90895 1.19528 0.91778 1.40692 0.97201 0.89962 1.25946 0.99614 0.92471 0.95355 1.69940 1.38678 1.20601 1.09866 0.86500 0.81465 0.81516 0.78554 1.19446 1.19867 1.18058 1.20595 0.93113 1.13295 0.97396 1.20285 0.93864 0.98551 0.95727 0.93155 0.90532 0.92229 0.89646 0.92477 0.89181 0.93316 0.72572 0.76439 0.89196 0.87455 0.90551 0.88722 0.88042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 8.87 37.16 0.33 -1.35 16 2 C -0.06 -0.76 1.79 -90.62 -0.16 -0.93 16 3 C -0.16 -1.97 8.87 37.15 0.33 -1.64 16 4 C -0.10 -1.23 2.25 -92.92 -0.21 -1.44 16 5 H 0.13 1.27 8.14 -51.93 -0.42 0.85 16 6 C 0.49 5.89 7.32 36.01 0.26 6.15 16 7 O -0.50 -6.97 14.42 -18.74 -0.27 -7.24 16 8 O -0.51 -4.83 11.81 -39.26 -0.46 -5.30 16 9 C 0.50 8.43 6.66 -10.98 -0.07 8.36 16 10 O -0.51 -10.31 11.27 5.56 0.06 -10.24 16 11 N -0.64 -11.03 5.11 -9.74 -0.05 -11.08 16 12 C -0.03 -0.56 6.25 -83.57 -0.52 -1.08 16 13 C -0.10 -2.21 9.90 -39.79 -0.39 -2.61 16 14 C -0.17 -4.30 8.74 -39.25 -0.34 -4.64 16 15 C 0.11 3.00 5.57 -106.80 -0.59 2.41 16 16 C -0.46 -12.11 8.94 -37.85 -0.34 -12.45 16 17 H 0.08 2.08 8.01 -52.49 -0.42 1.66 16 18 C 0.09 2.14 4.77 -17.34 -0.08 2.06 16 19 N -0.77 -19.08 11.78 55.55 0.65 -18.43 16 20 Si 0.90 17.93 29.66 -169.99 -5.04 12.89 16 21 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 23 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 24 C -0.22 -5.64 9.74 -39.26 -0.38 -6.02 16 25 C -0.06 -1.53 8.59 -39.79 -0.34 -1.87 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.89 5.52 -51.92 -0.29 0.60 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 1.23 8.06 -51.93 -0.42 0.81 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 1.39 5.51 -51.93 -0.29 1.10 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.41 2.14 9.10 45.56 0.41 2.56 16 34 H 0.40 5.78 7.37 -40.82 -0.30 5.48 16 35 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 36 H 0.11 2.73 6.53 -52.49 -0.34 2.39 16 37 H 0.28 6.32 8.30 -40.82 -0.34 5.99 16 38 H 0.09 2.28 8.06 -52.48 -0.42 1.85 16 39 H 0.10 2.38 6.45 -52.49 -0.34 2.04 16 LS Contribution 325.30 15.07 4.90 4.90 Total: -1.00 -30.20 325.30 -6.80 -37.00 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -4.07 Total: 12.54 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -2.52 Total: -15.05 kcal Atomic # 7 Polarization: -30.11 SS G_CDS: 0.60 Total: -29.51 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.67 Total: -22.78 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.04 Total: 12.89 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.20 -6.80 -37.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588807944.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.509 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds