Wall clock time and date at job start Tue Mar 31 2020 06:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47102 * 2 1 4 4 C 1.53004 * 109.46649 * 240.00292 * 2 1 3 5 5 H 1.08996 * 109.47313 * 59.99678 * 4 2 1 6 6 C 1.50703 * 109.46924 * 299.99669 * 4 2 1 7 7 O 1.20819 * 120.00522 * 0.02562 * 6 4 2 8 8 O 1.34230 * 119.99480 * 179.97438 * 6 4 2 9 9 C 1.50699 * 109.46755 * 179.97438 * 4 2 1 10 10 O 1.21282 * 120.00437 * 0.02562 * 9 4 2 11 11 N 1.34780 * 120.00002 * 179.97438 * 9 4 2 12 12 C 1.39239 * 119.99974 * 176.72929 * 11 9 4 13 13 C 1.39480 * 119.83308 * 217.45657 * 12 11 9 14 14 C 1.36377 * 120.16778 * 179.71938 * 13 12 11 15 15 C 1.40877 * 119.82549 * 0.58154 * 14 13 12 16 16 C 1.41153 * 120.16274 * 179.67606 * 15 14 13 17 17 H 1.07994 * 119.99878 * 157.80256 * 16 15 14 18 18 C 1.39905 * 119.99684 * 337.80624 * 16 15 14 19 19 N 1.30868 * 120.00284 * 327.74478 * 18 16 15 20 20 Si 1.86798 * 119.99699 * 147.74999 * 18 16 15 21 21 H 1.48499 * 109.47153 * 94.98292 * 20 18 16 22 22 H 1.48505 * 109.47215 * 214.98229 * 20 18 16 23 23 H 1.48501 * 109.47469 * 334.98117 * 20 18 16 24 24 C 1.40874 * 119.67025 * 359.69480 * 15 14 13 25 25 C 1.36371 * 119.82830 * 0.02562 * 24 15 14 26 26 H 1.08996 * 109.47526 * 59.99900 * 1 2 3 27 27 H 1.09007 * 109.47315 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46922 * 299.99536 * 1 2 3 29 29 H 1.08999 * 109.46880 * 120.00436 * 2 1 3 30 30 H 1.09004 * 109.46854 * 60.00422 * 3 2 1 31 31 H 1.08998 * 109.46979 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47367 * 300.00435 * 3 2 1 33 33 H 0.96705 * 117.00027 * 179.97438 * 8 6 4 34 34 H 0.96996 * 119.99655 * 356.74079 * 11 9 4 35 35 H 1.08000 * 119.91794 * 0.02562 * 13 12 11 36 36 H 1.07990 * 120.08625 * 180.25677 * 14 13 12 37 37 H 0.97003 * 120.00425 * 180.02562 * 19 18 16 38 38 H 1.08003 * 120.08161 * 179.97438 * 24 15 14 39 39 H 1.07997 * 119.91102 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.6765 -0.2074 -2.1393 6 6 1.5376 -2.1421 -1.2493 7 8 0.8427 -2.5372 -0.3434 8 8 1.8614 -2.9683 -2.2564 9 6 3.5469 -0.7207 -1.2497 10 8 4.1534 -0.1956 -0.3401 11 7 4.2208 -1.3046 -2.2604 12 6 5.6114 -1.2450 -2.2960 13 6 6.2685 -1.0941 -3.5170 14 6 7.6300 -1.0292 -3.5592 15 6 8.3735 -1.1274 -2.3666 16 6 9.7833 -1.0680 -2.4028 17 1 10.3347 -0.7852 -1.5183 18 6 10.4662 -1.3754 -3.5845 19 7 9.9792 -2.2678 -4.4086 20 14 12.0734 -0.5121 -3.9859 21 1 13.2121 -1.3481 -3.5280 22 1 12.1706 -0.3041 -5.4531 23 1 12.1152 0.8021 -3.2959 24 6 7.7029 -1.2856 -1.1379 25 6 6.3407 -1.3430 -1.1111 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9562 0.8901 31 1 3.1300 1.4424 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.5160 -3.8705 -2.2124 34 1 3.7369 -1.7662 -2.9630 35 1 5.6973 -1.0234 -4.4309 36 1 8.1372 -0.9081 -4.5049 37 1 10.4529 -2.4812 -5.2277 38 1 8.2663 -1.3620 -0.2196 39 1 5.8252 -1.4647 -0.1699 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588807944.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:09 Heat of formation + Delta-G solvation = -134.431492 kcal Electronic energy + Delta-G solvation = -23059.034918 eV Core-core repulsion = 19544.216476 eV Total energy + Delta-G solvation = -3514.818442 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.16199 -40.74289 -39.18661 -37.58464 -36.44859 -35.93187 -34.83316 -31.61228 -31.32942 -30.01261 -27.98453 -26.70809 -23.90048 -23.45977 -22.76633 -21.67733 -20.66638 -19.39290 -19.22835 -18.56822 -18.13694 -17.83082 -17.02042 -16.51147 -15.99014 -15.89250 -15.69026 -15.13995 -14.78853 -14.55809 -14.40665 -13.97654 -13.85882 -13.51184 -13.29224 -13.25726 -12.96416 -12.83535 -12.75183 -12.69300 -12.34158 -12.31128 -12.18596 -11.86617 -11.71629 -11.55745 -11.39430 -11.13444 -10.70726 -10.38181 -9.47905 -9.01372 -8.73021 -6.23734 0.71862 0.99145 1.14135 1.35716 1.40838 1.52153 1.61469 2.08008 2.20419 2.30850 2.65160 3.30200 3.67714 3.73475 3.95972 4.21903 4.34786 4.40328 4.41828 4.47913 4.61504 4.82170 4.89923 5.02017 5.07378 5.10844 5.14725 5.25282 5.27016 5.34233 5.41151 5.53581 5.63981 5.66029 5.86729 6.02401 6.08644 6.35204 6.60404 6.68450 6.86771 6.89097 6.98542 7.34268 8.20369 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.032897 B = 0.003463 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.928897 B = 8084.119180 C = 8516.902881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.061 4.061 3 C -0.155 4.155 4 C -0.090 4.090 5 H 0.169 0.831 6 C 0.496 3.504 7 O -0.521 6.521 8 O -0.507 6.507 9 C 0.505 3.495 10 O -0.548 6.548 11 N -0.632 5.632 12 C -0.009 4.009 13 C -0.096 4.096 14 C -0.189 4.189 15 C 0.086 3.914 16 C -0.505 4.505 17 H 0.074 0.926 18 C 0.053 3.947 19 N -0.797 5.797 20 Si 0.971 3.029 21 H -0.261 1.261 22 H -0.260 1.260 23 H -0.262 1.262 24 C -0.246 4.246 25 C -0.075 4.075 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.435 0.565 34 H 0.418 0.582 35 H 0.125 0.875 36 H 0.099 0.901 37 H 0.295 0.705 38 H 0.090 0.910 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.872 1.593 -1.530 16.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.080 4.080 3 C -0.212 4.212 4 C -0.112 4.112 5 H 0.186 0.814 6 C 0.338 3.662 7 O -0.410 6.410 8 O -0.321 6.321 9 C 0.292 3.708 10 O -0.427 6.427 11 N -0.278 5.278 12 C -0.102 4.102 13 C -0.116 4.116 14 C -0.208 4.208 15 C 0.083 3.917 16 C -0.533 4.533 17 H 0.092 0.908 18 C -0.167 4.167 19 N -0.420 5.420 20 Si 0.791 3.209 21 H -0.185 1.185 22 H -0.184 1.184 23 H -0.186 1.186 24 C -0.266 4.266 25 C -0.095 4.095 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.298 0.702 34 H 0.256 0.744 35 H 0.143 0.857 36 H 0.117 0.883 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.492 2.073 -0.895 15.655 hybrid contribution 0.557 -0.757 -0.238 0.970 sum -14.934 1.315 -1.133 15.035 Atomic orbital electron populations 1.22049 0.92467 1.03305 1.03137 1.20748 0.97147 0.96220 0.93931 1.22017 1.02296 0.94170 1.02738 1.21457 0.91741 0.91724 1.06299 0.81399 1.22747 0.76580 0.87919 0.78934 1.90679 1.36713 1.76786 1.36812 1.84422 1.71931 1.29082 1.46708 1.20441 0.89364 0.78522 0.82477 1.90670 1.70033 1.45663 1.36299 1.42900 1.04591 1.53425 1.26840 1.17086 0.82168 1.17288 0.93697 1.20443 0.94320 1.00964 0.95871 1.20654 0.93054 1.09494 0.97645 1.17901 0.93931 0.88178 0.91700 1.19720 0.92195 1.43024 0.98341 0.90782 1.26702 1.03033 0.92419 0.94507 1.69932 1.40440 1.21151 1.10484 0.85379 0.76969 0.79777 0.78767 1.18520 1.18404 1.18579 1.20711 0.94003 1.14585 0.97259 1.20377 0.93500 0.99021 0.96617 0.90949 0.91533 0.91499 0.92425 0.91491 0.92554 0.91248 0.70181 0.74355 0.85680 0.88275 0.89428 0.89167 0.88236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 8.87 71.98 0.64 -2.13 16 2 C -0.06 -1.42 1.79 -10.79 -0.02 -1.44 16 3 C -0.16 -3.59 8.87 71.98 0.64 -2.95 16 4 C -0.09 -2.01 2.25 -12.28 -0.03 -2.04 16 5 H 0.17 2.52 8.14 -2.39 -0.02 2.50 16 6 C 0.50 10.62 7.32 71.24 0.52 11.14 16 7 O -0.52 -13.51 14.42 21.98 0.32 -13.19 16 8 O -0.51 -7.85 11.81 -51.41 -0.61 -8.46 16 9 C 0.51 16.14 6.66 87.66 0.58 16.73 16 10 O -0.55 -22.05 11.27 -3.04 -0.03 -22.09 16 11 N -0.63 -20.60 5.11 -303.11 -1.55 -22.15 16 12 C -0.01 -0.40 6.25 38.56 0.24 -0.16 16 13 C -0.10 -4.20 9.90 22.13 0.22 -3.98 16 14 C -0.19 -9.59 8.74 22.48 0.20 -9.39 16 15 C 0.09 4.67 5.57 -21.27 -0.12 4.55 16 16 C -0.51 -27.39 8.94 23.39 0.21 -27.18 16 17 H 0.07 3.96 8.01 -2.91 -0.02 3.93 16 18 C 0.05 2.62 4.77 85.24 0.41 3.02 16 19 N -0.80 -39.94 11.78 21.82 0.26 -39.68 16 20 Si 0.97 36.97 29.66 68.60 2.03 39.00 16 21 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 22 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 23 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 24 C -0.25 -12.91 9.74 22.48 0.22 -12.69 16 25 C -0.08 -3.64 8.59 22.13 0.19 -3.45 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.07 1.38 5.52 -2.38 -0.01 1.37 16 28 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.06 1.65 8.06 -2.39 -0.02 1.63 16 30 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.06 1.72 5.51 -2.39 -0.01 1.71 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 33 H 0.43 3.06 9.10 -74.05 -0.67 2.39 16 34 H 0.42 10.70 7.37 -92.71 -0.68 10.02 16 35 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 36 H 0.10 5.12 6.53 -2.92 -0.02 5.10 16 37 H 0.29 13.07 8.30 -92.71 -0.77 12.30 16 38 H 0.09 4.63 8.06 -2.91 -0.02 4.60 16 39 H 0.10 4.79 6.45 -2.91 -0.02 4.78 16 Total: -1.00 -67.76 325.30 4.06 -63.70 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: -0.26 Total: 32.85 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: 3.90 Total: -29.98 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: -1.29 Total: -61.83 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -0.32 Total: -43.74 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 2.03 Total: 39.00 kcal Total: -67.76 4.06 -63.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588807944.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.736 kcal (2) G-P(sol) polarization free energy of solvation -67.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds