Wall clock time and date at job start Tue Mar 31 2020 07:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.39457 * 120.00402 * 275.00227 * 13 3 2 15 15 C 1.38740 * 120.11894 * 359.72629 * 14 13 3 16 16 C 1.38348 * 120.01252 * 179.70150 * 15 14 13 17 17 F 1.35096 * 119.86797 * 180.27867 * 16 15 14 18 18 C 1.38651 * 120.26434 * 0.59230 * 16 15 14 19 19 C 1.37973 * 120.25077 * 359.68672 * 18 16 15 20 20 C 1.39260 * 119.98125 * 0.02562 * 19 18 16 21 21 C 1.48347 * 120.13350 * 180.02562 * 20 19 18 22 22 N 1.34088 * 126.67771 * 179.66408 * 21 20 19 23 23 N 1.28986 * 107.25921 * 179.86787 * 22 21 20 24 24 N 1.28722 * 108.95786 * 0.39700 * 23 22 21 25 25 H 0.97005 * 125.33638 * 179.78805 * 24 23 22 26 26 N 1.28867 * 109.32856 * 359.74599 * 24 23 22 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 33 33 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 34 34 H 1.07995 * 119.99714 * 359.97438 * 15 14 13 35 35 H 1.08002 * 119.87734 * 179.69827 * 18 16 15 36 36 H 1.08004 * 120.00943 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 7 1.6524 2.0974 1.2518 14 6 0.3928 2.6840 1.3711 15 6 -0.4931 2.6538 0.3038 16 6 -1.7444 3.2310 0.4265 17 9 -2.6068 3.1949 -0.6127 18 6 -2.1145 3.8520 1.6097 19 6 -1.2399 3.8935 2.6760 20 6 0.0200 3.3106 2.5658 21 6 0.9628 3.3527 3.7104 22 7 2.1977 2.8318 3.7505 23 7 2.6824 3.0856 4.9185 24 7 1.8045 3.7303 5.6045 25 1 1.9205 4.0372 6.5174 26 7 0.7475 3.9047 4.8883 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8292 -0.0609 -2.9500 33 1 2.2719 2.1231 1.9979 34 1 -0.2076 2.1757 -0.6216 35 1 -3.0911 4.3049 1.6970 36 1 -1.5324 4.3779 3.5959 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590420404.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:16 Heat of formation + Delta-G solvation = 110.099116 kcal Electronic energy + Delta-G solvation = -23239.371864 eV Core-core repulsion = 19676.282262 eV Total energy + Delta-G solvation = -3563.089602 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.54109 -44.24332 -39.22430 -36.01444 -34.27197 -33.26631 -32.77756 -31.16705 -29.94373 -28.97504 -26.35608 -24.72941 -23.88050 -23.04285 -22.11114 -21.24010 -19.57134 -19.07328 -17.69971 -16.94435 -16.54917 -16.30302 -15.57431 -15.24868 -14.89677 -14.72784 -14.16977 -13.94582 -13.60851 -13.35034 -12.79224 -12.59479 -12.31014 -12.07015 -11.86314 -11.70853 -11.31484 -11.19988 -11.17051 -10.89235 -10.87295 -10.69730 -10.54220 -10.29727 -10.13511 -9.76823 -9.42629 -9.02414 -8.46083 -8.25268 -6.71740 -6.16153 -4.23741 0.99629 1.38839 1.93289 2.38920 2.57043 3.27046 3.31285 3.34455 3.91119 4.12179 4.21238 4.39368 4.44843 4.73975 5.15595 5.19945 5.43893 5.51773 5.62470 5.82602 6.01119 6.19155 6.24984 6.32399 6.41674 6.45513 6.52952 6.63596 6.68781 6.88434 6.92145 7.15210 7.22064 7.42657 7.67614 7.78141 8.06205 8.22899 8.34736 8.70363 8.91917 9.42883 10.89523 Molecular weight = 291.12amu Principal moments of inertia in cm(-1) A = 0.012312 B = 0.006563 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.736691 B = 4265.038320 C = 6086.809828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.133 4.133 3 C 0.263 3.737 4 H 0.044 0.956 5 C -0.529 4.529 6 H 0.064 0.936 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.901 3.099 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.691 5.691 14 C 0.302 3.698 15 C -0.243 4.243 16 C 0.165 3.835 17 F -0.142 7.142 18 C -0.246 4.246 19 C 0.001 3.999 20 C -0.152 4.152 21 C 0.252 3.748 22 N -0.283 5.283 23 N -0.048 5.048 24 N -0.234 5.234 25 H 0.472 0.528 26 N -0.314 5.314 27 H 0.046 0.954 28 H 0.032 0.968 29 H 0.048 0.952 30 H 0.037 0.963 31 H 0.103 0.897 32 H 0.265 0.735 33 H 0.412 0.588 34 H 0.154 0.846 35 H 0.129 0.871 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.620 5.807 11.307 14.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.172 4.172 3 C 0.161 3.839 4 H 0.062 0.938 5 C -0.568 4.568 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.314 5.314 14 C 0.182 3.818 15 C -0.267 4.267 16 C 0.143 3.857 17 F -0.120 7.120 18 C -0.268 4.268 19 C -0.020 4.020 20 C -0.162 4.162 21 C -0.026 4.026 22 N -0.156 5.156 23 N -0.043 5.043 24 N -0.079 5.079 25 H 0.325 0.675 26 N -0.166 5.166 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.121 0.879 32 H 0.075 0.925 33 H 0.256 0.744 34 H 0.172 0.828 35 H 0.147 0.853 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.854 5.420 11.205 14.210 hybrid contribution 0.741 0.209 0.345 0.843 sum -6.113 5.629 11.550 14.229 Atomic orbital electron populations 1.22220 0.98957 0.99513 1.00416 1.22028 0.92167 1.00002 1.02990 1.18956 0.95127 0.89092 0.80731 0.93818 1.21160 0.90482 1.38858 1.06273 0.91832 1.24848 0.98705 0.94662 0.95288 1.69845 1.35302 1.37799 1.09424 0.86500 0.84797 0.78412 0.77422 1.20057 1.21130 1.20150 1.46463 1.11593 1.54160 1.19217 1.17578 0.86644 0.87104 0.90425 1.20920 0.93623 1.10471 1.01683 1.17536 0.87327 0.96700 0.84092 1.91466 1.69071 1.94425 1.57053 1.20500 1.02251 1.10575 0.93425 1.20510 0.90296 0.93565 0.97600 1.16634 0.94552 1.14921 0.90124 1.23573 0.91780 0.95131 0.92136 1.75608 1.08609 1.21110 1.10306 1.78872 1.17138 1.08917 0.99365 1.47622 1.07266 1.36721 1.16331 0.67506 1.74884 1.11569 1.25131 1.04975 0.93523 0.94846 0.93266 0.94396 0.87886 0.92462 0.74420 0.82815 0.85327 0.85045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.23 37.16 0.31 -2.73 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.26 6.30 2.20 -69.08 -0.15 6.15 16 4 H 0.04 1.12 6.47 -51.93 -0.34 0.79 16 5 C -0.53 -13.97 8.73 -34.44 -0.30 -14.27 16 6 H 0.06 1.69 7.74 -52.48 -0.41 1.28 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.89 -23.92 11.29 55.43 0.63 -23.29 16 9 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.69 -14.74 5.10 -53.11 -0.27 -15.02 16 14 C 0.30 5.74 5.48 -83.56 -0.46 5.29 16 15 C -0.24 -4.45 6.69 -39.36 -0.26 -4.71 16 16 C 0.16 2.68 7.29 -39.39 -0.29 2.39 16 17 F -0.14 -2.29 17.26 2.25 0.04 -2.25 16 18 C -0.25 -3.46 10.01 -39.53 -0.40 -3.85 16 19 C 0.00 0.02 9.69 -39.30 -0.38 -0.36 16 20 C -0.15 -2.57 5.89 -104.71 -0.62 -3.19 16 21 C 0.25 4.17 7.90 -156.29 -1.23 2.94 16 22 N -0.28 -5.02 9.45 32.14 0.30 -4.72 16 23 N -0.05 -0.70 13.47 60.35 0.81 0.11 16 24 N -0.23 -2.58 7.90 60.35 0.48 -2.10 16 25 H 0.47 2.62 8.96 -340.36 -3.05 -0.43 16 26 N -0.31 -4.26 12.08 32.16 0.39 -3.87 16 27 H 0.05 0.89 5.40 -51.93 -0.28 0.61 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.95 6.37 -51.93 -0.33 0.62 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 32 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.41 8.87 5.09 -40.82 -0.21 8.66 16 34 H 0.15 3.01 4.03 -52.49 -0.21 2.80 16 35 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.13 1.55 7.88 -52.48 -0.41 1.13 16 LS Contribution 300.80 15.07 4.53 4.53 Total: -1.00 -28.62 300.80 -8.08 -36.70 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -5.95 Total: 8.05 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -4.02 Total: -13.85 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 2.34 Total: -48.88 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.62 -8.08 -36.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590420404.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.800 kcal (2) G-P(sol) polarization free energy of solvation -28.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds