Wall clock time and date at job start Tue Mar 31 2020 07:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.39457 * 120.00402 * 275.00227 * 13 3 2 15 15 C 1.38740 * 120.11894 * 359.72629 * 14 13 3 16 16 C 1.38348 * 120.01252 * 179.70150 * 15 14 13 17 17 F 1.35096 * 119.86797 * 180.27867 * 16 15 14 18 18 C 1.38651 * 120.26434 * 0.59230 * 16 15 14 19 19 C 1.37973 * 120.25077 * 359.68672 * 18 16 15 20 20 C 1.39260 * 119.98125 * 0.02562 * 19 18 16 21 21 C 1.48347 * 120.13350 * 180.02562 * 20 19 18 22 22 N 1.34088 * 126.67771 * 179.66408 * 21 20 19 23 23 N 1.28986 * 107.25921 * 179.86787 * 22 21 20 24 24 N 1.28722 * 108.95786 * 0.39700 * 23 22 21 25 25 H 0.97005 * 125.33638 * 179.78805 * 24 23 22 26 26 N 1.28867 * 109.32856 * 359.74599 * 24 23 22 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 33 33 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 34 34 H 1.07995 * 119.99714 * 359.97438 * 15 14 13 35 35 H 1.08002 * 119.87734 * 179.69827 * 18 16 15 36 36 H 1.08004 * 120.00943 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 7 1.6524 2.0974 1.2518 14 6 0.3928 2.6840 1.3711 15 6 -0.4931 2.6538 0.3038 16 6 -1.7444 3.2310 0.4265 17 9 -2.6068 3.1949 -0.6127 18 6 -2.1145 3.8520 1.6097 19 6 -1.2399 3.8935 2.6760 20 6 0.0200 3.3106 2.5658 21 6 0.9628 3.3527 3.7104 22 7 2.1977 2.8318 3.7505 23 7 2.6824 3.0856 4.9185 24 7 1.8045 3.7303 5.6045 25 1 1.9205 4.0372 6.5174 26 7 0.7475 3.9047 4.8883 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8292 -0.0609 -2.9500 33 1 2.2719 2.1231 1.9979 34 1 -0.2076 2.1757 -0.6216 35 1 -3.0911 4.3049 1.6970 36 1 -1.5324 4.3779 3.5959 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590420404.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:16 Heat of formation + Delta-G solvation = 92.130810 kcal Electronic energy + Delta-G solvation = -23240.151028 eV Core-core repulsion = 19676.282262 eV Total energy + Delta-G solvation = -3563.868766 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.82774 -45.38433 -40.60561 -37.61230 -35.46586 -34.57316 -34.44979 -32.83105 -31.28063 -30.43819 -28.11085 -25.91441 -25.19021 -24.75432 -23.53533 -22.50797 -21.23942 -20.22381 -19.19138 -18.18438 -18.06795 -17.66409 -17.09950 -16.57526 -16.52743 -16.16112 -15.84504 -15.19654 -15.16700 -14.79012 -14.21755 -14.03450 -13.77895 -13.46210 -13.31792 -13.14913 -13.01534 -12.90898 -12.69608 -12.34919 -12.31511 -12.13278 -11.92055 -11.90364 -11.75243 -11.47141 -11.08056 -10.83356 -10.41439 -9.53293 -8.22168 -8.13812 -6.31480 -0.21638 0.21938 0.65444 1.31482 1.42444 1.43205 1.50975 1.51503 2.37266 2.65492 2.83506 2.92857 3.12014 3.22849 3.42611 3.95890 4.24519 4.27109 4.41221 4.47540 4.55446 4.60671 4.69466 4.79736 5.00806 5.09022 5.17326 5.27136 5.34570 5.38105 5.41394 5.59161 5.66194 5.71256 5.85086 5.99369 6.16437 6.51422 6.80293 7.08577 7.31957 7.40712 8.87290 Molecular weight = 291.12amu Principal moments of inertia in cm(-1) A = 0.012312 B = 0.006563 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.736691 B = 4265.038320 C = 6086.809828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 C 0.275 3.725 4 H 0.017 0.983 5 C -0.549 4.549 6 H 0.054 0.946 7 C 0.025 3.975 8 N -0.908 5.908 9 Si 0.959 3.041 10 H -0.272 1.272 11 H -0.279 1.279 12 H -0.274 1.274 13 N -0.708 5.708 14 C 0.279 3.721 15 C -0.259 4.259 16 C 0.160 3.840 17 F -0.142 7.142 18 C -0.222 4.222 19 C 0.012 3.988 20 C -0.151 4.151 21 C 0.233 3.767 22 N -0.323 5.323 23 N -0.056 5.056 24 N -0.197 5.197 25 H 0.495 0.505 26 N -0.294 5.294 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.027 0.973 31 H 0.076 0.924 32 H 0.267 0.733 33 H 0.410 0.590 34 H 0.132 0.868 35 H 0.166 0.834 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.939 7.133 13.407 17.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.164 4.164 3 C 0.171 3.829 4 H 0.035 0.965 5 C -0.587 4.587 6 H 0.072 0.928 7 C -0.176 4.176 8 N -0.546 5.546 9 Si 0.785 3.215 10 H -0.197 1.197 11 H -0.204 1.204 12 H -0.200 1.200 13 N -0.334 5.334 14 C 0.163 3.837 15 C -0.283 4.283 16 C 0.139 3.861 17 F -0.120 7.120 18 C -0.243 4.243 19 C -0.009 4.009 20 C -0.161 4.161 21 C -0.046 4.046 22 N -0.195 5.195 23 N -0.051 5.051 24 N -0.048 5.048 25 H 0.354 0.646 26 N -0.147 5.147 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.253 0.747 34 H 0.149 0.851 35 H 0.184 0.816 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -8.202 6.770 13.340 17.060 hybrid contribution 1.041 -0.073 -0.144 1.053 sum -7.161 6.697 13.196 16.440 Atomic orbital electron populations 1.22061 0.96441 1.00501 1.00653 1.21845 0.94389 0.99183 1.00988 1.18546 0.93628 0.89325 0.81381 0.96508 1.21464 0.92087 1.38942 1.06254 0.92805 1.25567 1.02652 0.94347 0.95007 1.69960 1.36719 1.38206 1.09708 0.85594 0.80066 0.78343 0.77545 1.19709 1.20415 1.19982 1.46123 1.12960 1.56272 1.18058 1.17756 0.85962 0.88242 0.91701 1.20788 0.94849 1.11763 1.00918 1.17667 0.86597 0.96851 0.84976 1.91467 1.68817 1.94433 1.57329 1.20900 1.03441 1.08242 0.91765 1.20876 0.88799 0.92389 0.98823 1.16876 0.95640 1.14118 0.89451 1.23592 0.91737 0.96261 0.92979 1.75580 1.09644 1.22591 1.11677 1.78820 1.17557 1.09702 0.99034 1.47709 1.05880 1.34330 1.16880 0.64619 1.74830 1.11827 1.24020 1.03981 0.92914 0.93313 0.93405 0.95426 0.90542 0.92418 0.74692 0.85081 0.81620 0.81666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.64 8.23 71.98 0.59 -5.04 16 2 C -0.12 -6.01 5.45 30.59 0.17 -5.84 16 3 C 0.27 13.86 2.20 44.24 0.10 13.96 16 4 H 0.02 0.94 6.47 -2.39 -0.02 0.92 16 5 C -0.55 -30.25 8.73 25.60 0.22 -30.03 16 6 H 0.05 2.99 7.74 -2.91 -0.02 2.96 16 7 C 0.02 1.36 5.29 84.66 0.45 1.80 16 8 N -0.91 -50.70 11.29 21.45 0.24 -50.46 16 9 Si 0.96 43.34 29.54 68.60 2.03 45.36 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 13 N -0.71 -31.41 5.10 -321.94 -1.64 -33.06 16 14 C 0.28 10.73 5.48 38.47 0.21 10.94 16 15 C -0.26 -9.61 6.69 22.42 0.15 -9.46 16 16 C 0.16 4.96 7.29 22.39 0.16 5.13 16 17 F -0.14 -4.40 17.26 44.97 0.78 -3.62 16 18 C -0.22 -5.43 10.01 22.31 0.22 -5.20 16 19 C 0.01 0.29 9.69 22.45 0.22 0.50 16 20 C -0.15 -4.88 5.89 -19.92 -0.12 -5.00 16 21 C 0.23 7.36 7.90 137.32 1.08 8.44 16 22 N -0.32 -11.35 9.45 -52.23 -0.49 -11.84 16 23 N -0.06 -1.58 13.47 37.02 0.50 -1.08 16 24 N -0.20 -3.79 7.90 37.02 0.29 -3.50 16 25 H 0.49 3.80 8.96 -347.53 -3.12 0.69 16 26 N -0.29 -7.09 12.08 -52.17 -0.63 -7.72 16 27 H 0.05 2.05 5.40 -2.39 -0.01 2.04 16 28 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.05 1.92 6.37 -2.38 -0.02 1.90 16 30 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 4.07 5.95 -2.39 -0.01 4.06 16 32 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 33 H 0.41 18.33 5.09 -92.71 -0.47 17.85 16 34 H 0.13 5.42 4.03 -2.91 -0.01 5.41 16 35 H 0.17 2.89 8.06 -2.91 -0.02 2.86 16 36 H 0.17 3.02 7.88 -2.91 -0.02 2.99 16 Total: -1.00 -64.07 300.80 2.11 -61.95 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: -2.41 Total: 23.76 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 3.46 Total: -19.80 kcal Atomic # 7 Polarization: -105.92 SS G_CDS: -1.73 Total: -107.65 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.78 Total: -3.62 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -64.07 2.11 -61.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590420404.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.083 kcal (2) G-P(sol) polarization free energy of solvation -64.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds