Wall clock time and date at job start Tue Mar 31 2020 06:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38284 * 119.92848 * 2 1 4 4 C 1.38109 * 120.06839 * 179.72483 * 3 2 1 5 5 C 1.38870 * 119.92984 * 0.25179 * 4 3 2 6 6 N 1.39924 * 120.06668 * 180.02562 * 5 4 3 7 7 C 1.46510 * 119.99841 * 173.06129 * 6 5 4 8 8 C 1.50699 * 109.46835 * 94.50283 * 7 6 5 9 9 H 1.07995 * 120.00287 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99647 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00264 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 119.99950 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.46951 * 90.00008 * 12 10 8 14 14 H 1.48501 * 109.46873 * 210.00064 * 12 10 8 15 15 H 1.48494 * 109.47163 * 329.99879 * 12 10 8 16 16 C 1.34775 * 120.00238 * 353.06212 * 6 5 4 17 17 O 1.21278 * 120.00352 * 3.29380 * 16 6 5 18 18 C 1.50702 * 119.99718 * 183.29498 * 16 6 5 19 19 H 1.09003 * 109.47501 * 335.57363 * 18 16 6 20 20 C 1.53003 * 109.47355 * 95.57831 * 18 16 6 21 21 C 1.50706 * 109.47059 * 215.57569 * 18 16 6 22 22 O 1.20828 * 119.99516 * 0.02562 * 21 18 16 23 23 O 1.34225 * 120.00413 * 180.02562 * 21 18 16 24 24 C 1.38868 * 119.85953 * 0.02562 * 5 4 3 25 25 C 1.38110 * 119.93088 * 359.97438 * 24 5 4 26 26 H 1.08994 * 109.46753 * 90.00006 * 1 2 3 27 27 H 1.08993 * 109.46523 * 209.99792 * 1 2 3 28 28 H 1.08993 * 109.46931 * 329.99867 * 1 2 3 29 29 H 1.08005 * 119.96178 * 359.97438 * 3 2 1 30 30 H 1.08003 * 120.03464 * 180.27593 * 4 3 2 31 31 H 1.08997 * 109.46947 * 214.50463 * 7 6 5 32 32 H 1.08999 * 109.46845 * 334.50336 * 7 6 5 33 33 H 0.96994 * 120.00631 * 180.02562 * 11 10 8 34 34 H 1.08998 * 109.46968 * 67.01505 * 20 18 16 35 35 H 1.09002 * 109.47156 * 187.01616 * 20 18 16 36 36 H 1.09000 * 109.46517 * 307.01348 * 20 18 16 37 37 H 0.96696 * 117.00269 * 180.02562 * 23 21 18 38 38 H 1.08002 * 120.03549 * 179.97438 * 24 5 4 39 39 H 1.07997 * 119.96354 * 180.02562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2018 0.0057 5 6 4.2739 0.0000 0.0062 6 7 5.6731 0.0001 0.0126 7 6 6.4050 -1.2597 0.1664 8 6 6.7590 -1.8042 -1.1935 9 1 6.4675 -1.2660 -2.0833 10 6 7.4539 -2.9901 -1.3017 11 7 7.7624 -3.4657 -2.4884 12 14 7.9574 -3.9214 0.2374 13 1 6.8819 -4.8738 0.6137 14 1 9.2123 -4.6706 -0.0257 15 1 8.1782 -2.9602 1.3476 16 6 6.3476 1.1591 -0.1228 17 8 5.7431 2.2083 -0.1901 18 6 7.8531 1.1512 -0.1905 19 1 8.2343 0.2556 0.3001 20 6 8.2978 1.1592 -1.6545 21 6 8.3937 2.3738 0.5053 22 8 7.6343 3.1696 1.0053 23 8 9.7186 2.5788 0.5696 24 6 3.5781 -1.2018 0.0004 25 6 2.1970 -1.1984 -0.0053 26 1 -0.3632 0.0000 -1.0276 27 1 -0.3632 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 1.6552 2.1327 -0.0004 30 1 4.1164 2.1381 0.0102 31 1 7.3175 -1.0826 0.7357 32 1 5.7810 -1.9802 0.6951 33 1 8.2510 -4.3001 -2.5645 34 1 8.0247 2.1101 -2.1120 35 1 9.3787 1.0280 -1.7066 36 1 7.8069 0.3451 -2.1877 37 1 10.0178 3.3768 1.0265 38 1 4.1164 -2.1381 0.0003 39 1 1.6554 -2.1327 -0.0094 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594367503.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:52 Heat of formation + Delta-G solvation = -83.710906 kcal Electronic energy + Delta-G solvation = -23746.126427 eV Core-core repulsion = 20233.507394 eV Total energy + Delta-G solvation = -3512.619032 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.84365 -39.68223 -38.05233 -35.96851 -35.48324 -33.44987 -32.67846 -31.20151 -30.41680 -28.28660 -26.31149 -24.92968 -23.35634 -22.57472 -21.77997 -20.66629 -18.81579 -17.96299 -17.27437 -17.06089 -16.44816 -16.01883 -15.53168 -14.99046 -14.73362 -14.30606 -14.14215 -13.75845 -13.43673 -13.30449 -13.20891 -12.94332 -12.62235 -12.26870 -12.09713 -11.94347 -11.81003 -11.72265 -11.52279 -11.32172 -11.17844 -11.09989 -10.78486 -10.62796 -10.44152 -10.13155 -9.79736 -9.21269 -8.88687 -8.70692 -8.39923 -7.18851 -6.35950 -4.40241 1.74768 1.95637 2.40500 2.82238 3.07242 3.09727 3.14650 3.19012 3.72634 4.13005 4.36634 4.64609 4.92637 5.22695 5.27447 5.29590 5.34997 5.46104 5.54191 5.63762 5.79297 5.90649 6.01459 6.05230 6.08632 6.12178 6.19423 6.33631 6.42886 6.60439 6.61787 6.66775 6.86365 6.89803 7.09135 7.15738 7.20445 7.72223 7.83485 8.06073 8.19304 8.58250 8.69073 9.20522 10.75556 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.010539 B = 0.007589 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.144378 B = 3688.700250 C = 5800.536977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.129 4.129 3 C -0.105 4.105 4 C -0.173 4.173 5 C 0.165 3.835 6 N -0.527 5.527 7 C 0.195 3.805 8 C -0.546 4.546 9 H 0.085 0.915 10 C 0.084 3.916 11 N -0.881 5.881 12 Si 0.865 3.135 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.264 1.264 16 C 0.531 3.469 17 O -0.508 6.508 18 C -0.097 4.097 19 H 0.137 0.863 20 C -0.134 4.134 21 C 0.486 3.514 22 O -0.491 6.491 23 O -0.514 6.514 24 C -0.142 4.142 25 C -0.102 4.102 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.115 0.885 30 H 0.180 0.820 31 H 0.040 0.960 32 H 0.044 0.956 33 H 0.269 0.731 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.407 0.593 38 H 0.135 0.865 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.613 5.726 5.587 8.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.130 4.130 3 C -0.124 4.124 4 C -0.192 4.192 5 C 0.070 3.930 6 N -0.246 5.246 7 C 0.075 3.925 8 C -0.584 4.584 9 H 0.103 0.897 10 C -0.121 4.121 11 N -0.517 5.517 12 Si 0.691 3.309 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.189 1.189 16 C 0.320 3.680 17 O -0.385 6.385 18 C -0.119 4.119 19 H 0.154 0.846 20 C -0.191 4.191 21 C 0.327 3.673 22 O -0.377 6.377 23 O -0.326 6.326 24 C -0.163 4.163 25 C -0.121 4.121 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.133 0.867 30 H 0.196 0.804 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.120 0.880 37 H 0.265 0.735 38 H 0.153 0.847 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.081 5.973 5.388 8.614 hybrid contribution 0.618 -0.458 0.970 1.238 sum -2.463 5.516 6.358 8.770 Atomic orbital electron populations 1.20669 0.91987 1.01890 1.01586 1.19806 0.95518 0.93493 1.04162 1.20915 0.93941 0.96878 1.00641 1.22734 0.94411 1.00216 1.01881 1.17996 0.82135 0.94393 0.98512 1.45528 1.04170 1.08954 1.65938 1.20164 0.92021 0.80958 0.99360 1.21215 1.37748 1.08090 0.91350 0.89740 1.24807 0.94872 0.96624 0.95834 1.69859 1.38474 1.20825 1.22551 0.87018 0.79110 0.80994 0.83729 1.19675 1.20550 1.18859 1.19783 0.88713 0.83056 0.76451 1.90337 1.67862 1.31531 1.48758 1.21012 0.93485 0.96354 1.01068 0.84575 1.21702 1.02994 1.04046 0.90376 1.22964 0.80028 0.87077 0.77276 1.90784 1.58383 1.45419 1.43107 1.84531 1.25458 1.48859 1.73703 1.21022 0.94139 0.97383 1.03722 1.20716 0.93361 0.97149 1.00870 0.91932 0.92192 0.92235 0.86664 0.80414 0.94274 0.93856 0.92068 0.92498 0.90436 0.87993 0.73500 0.84697 0.86410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 10.01 36.01 0.36 -0.87 16 2 C -0.13 -2.01 5.88 -104.58 -0.62 -2.62 16 3 C -0.11 -1.76 9.69 -39.61 -0.38 -2.14 16 4 C -0.17 -3.38 9.04 -39.39 -0.36 -3.74 16 5 C 0.16 3.36 6.49 -83.70 -0.54 2.82 16 6 N -0.53 -10.92 2.69 -114.73 -0.31 -11.23 16 7 C 0.20 4.08 3.36 -5.19 -0.02 4.06 16 8 C -0.55 -13.13 8.79 -34.44 -0.30 -13.43 16 9 H 0.08 2.29 7.29 -52.49 -0.38 1.90 16 10 C 0.08 2.08 5.47 -17.82 -0.10 1.99 16 11 N -0.88 -23.78 13.96 55.43 0.77 -23.00 16 12 Si 0.87 18.41 27.47 -169.99 -4.67 13.74 16 13 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 14 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 15 H -0.26 -5.26 6.54 56.52 0.37 -4.89 16 16 C 0.53 10.86 6.40 -10.99 -0.07 10.79 16 17 O -0.51 -11.21 11.55 -17.24 -0.20 -11.41 16 18 C -0.10 -1.71 2.61 -92.92 -0.24 -1.96 16 19 H 0.14 2.30 5.71 -51.93 -0.30 2.01 16 20 C -0.13 -2.22 9.11 37.16 0.34 -1.88 16 21 C 0.49 8.02 7.56 36.01 0.27 8.29 16 22 O -0.49 -9.62 15.57 -26.31 -0.41 -10.03 16 23 O -0.51 -6.38 13.35 -39.24 -0.52 -6.91 16 24 C -0.14 -2.70 9.16 -39.40 -0.36 -3.06 16 25 C -0.10 -1.68 9.69 -39.61 -0.38 -2.07 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 28 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 29 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 30 H 0.18 3.73 4.55 -56.16 -0.26 3.47 16 31 H 0.04 0.78 5.11 -51.93 -0.27 0.51 16 32 H 0.04 0.89 5.69 -51.93 -0.30 0.59 16 33 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.10 1.95 6.26 -51.93 -0.33 1.63 16 37 H 0.41 3.08 9.10 45.56 0.41 3.50 16 38 H 0.14 2.60 6.25 -52.49 -0.33 2.27 16 39 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 323.59 15.07 4.88 4.88 Total: -1.00 -30.25 323.59 -6.72 -36.96 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -3.85 Total: 10.84 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -2.40 Total: -3.83 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: 0.46 Total: -34.23 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -1.13 Total: -28.35 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -4.67 Total: 13.74 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.25 -6.72 -36.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594367503.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.748 kcal (2) G-P(sol) polarization free energy of solvation -30.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds