Wall clock time and date at job start Tue Mar 31 2020 06:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38284 * 119.92848 * 2 1 4 4 C 1.38109 * 120.06839 * 179.72483 * 3 2 1 5 5 C 1.38870 * 119.92984 * 0.25179 * 4 3 2 6 6 N 1.39924 * 120.06668 * 180.02562 * 5 4 3 7 7 C 1.46510 * 119.99841 * 173.06129 * 6 5 4 8 8 C 1.50699 * 109.46835 * 94.50283 * 7 6 5 9 9 H 1.07995 * 120.00287 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99647 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00264 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 119.99950 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.46951 * 90.00008 * 12 10 8 14 14 H 1.48501 * 109.46873 * 210.00064 * 12 10 8 15 15 H 1.48494 * 109.47163 * 329.99879 * 12 10 8 16 16 C 1.34775 * 120.00238 * 353.06212 * 6 5 4 17 17 O 1.21278 * 120.00352 * 3.29380 * 16 6 5 18 18 C 1.50702 * 119.99718 * 183.29498 * 16 6 5 19 19 H 1.09003 * 109.47501 * 335.57363 * 18 16 6 20 20 C 1.53003 * 109.47355 * 95.57831 * 18 16 6 21 21 C 1.50706 * 109.47059 * 215.57569 * 18 16 6 22 22 O 1.20828 * 119.99516 * 0.02562 * 21 18 16 23 23 O 1.34225 * 120.00413 * 180.02562 * 21 18 16 24 24 C 1.38868 * 119.85953 * 0.02562 * 5 4 3 25 25 C 1.38110 * 119.93088 * 359.97438 * 24 5 4 26 26 H 1.08994 * 109.46753 * 90.00006 * 1 2 3 27 27 H 1.08993 * 109.46523 * 209.99792 * 1 2 3 28 28 H 1.08993 * 109.46931 * 329.99867 * 1 2 3 29 29 H 1.08005 * 119.96178 * 359.97438 * 3 2 1 30 30 H 1.08003 * 120.03464 * 180.27593 * 4 3 2 31 31 H 1.08997 * 109.46947 * 214.50463 * 7 6 5 32 32 H 1.08999 * 109.46845 * 334.50336 * 7 6 5 33 33 H 0.96994 * 120.00631 * 180.02562 * 11 10 8 34 34 H 1.08998 * 109.46968 * 67.01505 * 20 18 16 35 35 H 1.09002 * 109.47156 * 187.01616 * 20 18 16 36 36 H 1.09000 * 109.46517 * 307.01348 * 20 18 16 37 37 H 0.96696 * 117.00269 * 180.02562 * 23 21 18 38 38 H 1.08002 * 120.03549 * 179.97438 * 24 5 4 39 39 H 1.07997 * 119.96354 * 180.02562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2018 0.0057 5 6 4.2739 0.0000 0.0062 6 7 5.6731 0.0001 0.0126 7 6 6.4050 -1.2597 0.1664 8 6 6.7590 -1.8042 -1.1935 9 1 6.4675 -1.2660 -2.0833 10 6 7.4539 -2.9901 -1.3017 11 7 7.7624 -3.4657 -2.4884 12 14 7.9574 -3.9214 0.2374 13 1 6.8819 -4.8738 0.6137 14 1 9.2123 -4.6706 -0.0257 15 1 8.1782 -2.9602 1.3476 16 6 6.3476 1.1591 -0.1228 17 8 5.7431 2.2083 -0.1901 18 6 7.8531 1.1512 -0.1905 19 1 8.2343 0.2556 0.3001 20 6 8.2978 1.1592 -1.6545 21 6 8.3937 2.3738 0.5053 22 8 7.6343 3.1696 1.0053 23 8 9.7186 2.5788 0.5696 24 6 3.5781 -1.2018 0.0004 25 6 2.1970 -1.1984 -0.0053 26 1 -0.3632 0.0000 -1.0276 27 1 -0.3632 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 1.6552 2.1327 -0.0004 30 1 4.1164 2.1381 0.0102 31 1 7.3175 -1.0826 0.7357 32 1 5.7810 -1.9802 0.6951 33 1 8.2510 -4.3001 -2.5645 34 1 8.0247 2.1101 -2.1120 35 1 9.3787 1.0280 -1.7066 36 1 7.8069 0.3451 -2.1877 37 1 10.0178 3.3768 1.0265 38 1 4.1164 -2.1381 0.0003 39 1 1.6554 -2.1327 -0.0094 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594367503.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:51 Heat of formation + Delta-G solvation = -101.886373 kcal Electronic energy + Delta-G solvation = -23746.914574 eV Core-core repulsion = 20233.507394 eV Total energy + Delta-G solvation = -3513.407180 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.30748 -41.02619 -39.43715 -37.32708 -36.94854 -34.91715 -34.46117 -32.52726 -31.81481 -30.00776 -27.59758 -26.27044 -25.05270 -23.91188 -23.26853 -22.00807 -20.28179 -19.28958 -19.12485 -18.48907 -18.00428 -17.36244 -16.90703 -16.45809 -16.25464 -15.76371 -15.65811 -15.16706 -14.90257 -14.53802 -14.51747 -14.34606 -14.26488 -13.70152 -13.63183 -13.27792 -13.14453 -12.97721 -12.86158 -12.78006 -12.58317 -12.50945 -12.32903 -12.12403 -11.88172 -11.68682 -11.46643 -10.79355 -10.76274 -10.24833 -9.79859 -8.66088 -8.28234 -6.36800 0.33905 0.55455 1.09927 1.40691 1.42958 1.46015 1.50467 1.62823 2.33286 2.34573 2.95789 3.04281 3.16063 3.84688 3.94387 4.02242 4.10813 4.21905 4.28272 4.44319 4.47313 4.59487 4.68531 4.74981 4.76313 4.78021 4.92559 4.97492 5.18884 5.21705 5.24308 5.34729 5.43099 5.52635 5.54535 5.71076 5.79890 6.12179 6.28519 6.42815 6.68419 6.92928 7.04499 7.27575 8.86605 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.010539 B = 0.007589 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.144378 B = 3688.700250 C = 5800.536977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.121 4.121 3 C -0.107 4.107 4 C -0.192 4.192 5 C 0.132 3.868 6 N -0.532 5.532 7 C 0.201 3.799 8 C -0.534 4.534 9 H 0.041 0.959 10 C 0.035 3.965 11 N -0.930 5.930 12 Si 0.926 3.074 13 H -0.268 1.268 14 H -0.282 1.282 15 H -0.237 1.237 16 C 0.522 3.478 17 O -0.531 6.531 18 C -0.099 4.099 19 H 0.144 0.856 20 C -0.125 4.125 21 C 0.500 3.500 22 O -0.526 6.526 23 O -0.497 6.497 24 C -0.158 4.158 25 C -0.102 4.102 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.140 0.860 30 H 0.162 0.838 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.270 0.730 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.070 0.930 37 H 0.432 0.568 38 H 0.126 0.874 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.248 5.566 7.308 9.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.122 4.122 3 C -0.126 4.126 4 C -0.211 4.211 5 C 0.038 3.962 6 N -0.252 5.252 7 C 0.080 3.920 8 C -0.572 4.572 9 H 0.059 0.941 10 C -0.166 4.166 11 N -0.569 5.569 12 Si 0.749 3.251 13 H -0.193 1.193 14 H -0.208 1.208 15 H -0.160 1.160 16 C 0.311 3.689 17 O -0.409 6.409 18 C -0.121 4.121 19 H 0.162 0.838 20 C -0.182 4.182 21 C 0.341 3.659 22 O -0.415 6.415 23 O -0.311 6.311 24 C -0.178 4.178 25 C -0.120 4.120 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.158 0.842 30 H 0.178 0.822 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.120 0.880 36 H 0.089 0.911 37 H 0.294 0.706 38 H 0.144 0.856 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.705 5.837 7.127 9.929 hybrid contribution 0.736 -0.340 0.360 0.886 sum -2.969 5.497 7.487 9.751 Atomic orbital electron populations 1.20744 0.88661 1.03625 1.02855 1.20269 0.97841 0.92477 1.01581 1.21232 0.92946 0.98701 0.99676 1.22668 0.95799 0.99282 1.03365 1.18304 0.82186 0.95332 1.00424 1.45566 1.04639 1.08823 1.66146 1.20055 0.92919 0.81375 0.97610 1.21182 1.36907 1.07607 0.91468 0.94081 1.25557 0.94852 0.97460 0.98733 1.70004 1.40145 1.21606 1.25127 0.86040 0.78500 0.80008 0.80565 1.19319 1.20765 1.16048 1.20298 0.89943 0.82710 0.75927 1.90334 1.68651 1.32150 1.49793 1.21010 0.91717 0.97600 1.01747 0.83821 1.21603 1.04078 1.02938 0.89576 1.22562 0.80929 0.86007 0.76362 1.90782 1.59594 1.46400 1.44701 1.84460 1.22782 1.50324 1.73491 1.21103 0.95446 0.96453 1.04828 1.21093 0.92454 0.98926 0.99565 0.90714 0.90431 0.90659 0.84237 0.82176 0.92418 0.92943 0.92097 0.92159 0.88013 0.91107 0.70598 0.85629 0.83585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.02 10.01 71.24 0.71 -1.31 16 2 C -0.12 -3.49 5.88 -19.84 -0.12 -3.60 16 3 C -0.11 -3.47 9.69 22.25 0.22 -3.25 16 4 C -0.19 -7.63 9.04 22.39 0.20 -7.43 16 5 C 0.13 5.51 6.49 38.15 0.25 5.75 16 6 N -0.53 -22.61 2.69 -635.30 -1.71 -24.32 16 7 C 0.20 8.39 3.36 85.63 0.29 8.68 16 8 C -0.53 -26.32 8.79 25.60 0.22 -26.09 16 9 H 0.04 2.36 7.29 -2.91 -0.02 2.33 16 10 C 0.03 1.74 5.47 84.66 0.46 2.20 16 11 N -0.93 -51.60 13.96 21.45 0.30 -51.30 16 12 Si 0.93 37.19 27.47 68.60 1.88 39.07 16 13 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 14 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 15 H -0.24 -8.45 6.54 99.48 0.65 -7.80 16 16 C 0.52 21.87 6.40 87.66 0.56 22.43 16 17 O -0.53 -24.29 11.55 18.77 0.22 -24.07 16 18 C -0.10 -3.47 2.61 -12.28 -0.03 -3.50 16 19 H 0.14 4.73 5.71 -2.39 -0.01 4.72 16 20 C -0.12 -4.17 9.11 71.98 0.66 -3.52 16 21 C 0.50 15.96 7.56 71.24 0.54 16.50 16 22 O -0.53 -20.47 15.57 29.19 0.45 -20.01 16 23 O -0.50 -11.08 13.35 -51.37 -0.69 -11.77 16 24 C -0.16 -6.00 9.16 22.39 0.21 -5.80 16 25 C -0.10 -3.19 9.69 22.25 0.22 -2.97 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.08 1.29 8.09 -2.39 -0.02 1.28 16 28 H 0.07 1.28 8.08 -2.39 -0.02 1.26 16 29 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 30 H 0.16 7.00 4.55 -61.13 -0.28 6.72 16 31 H 0.06 2.21 5.11 -2.39 -0.01 2.19 16 32 H 0.05 2.11 5.69 -2.39 -0.01 2.10 16 33 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 34 H 0.06 1.94 8.13 -2.39 -0.02 1.92 16 35 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 36 H 0.07 2.84 6.26 -2.39 -0.01 2.83 16 37 H 0.43 5.26 9.10 -74.06 -0.67 4.58 16 38 H 0.13 4.90 6.25 -2.91 -0.02 4.88 16 39 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -68.01 323.59 4.94 -63.06 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: 0.10 Total: 31.24 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 4.38 Total: -1.89 kcal Atomic # 7 Polarization: -74.21 SS G_CDS: -1.41 Total: -75.62 kcal Atomic # 8 Polarization: -55.84 SS G_CDS: -0.01 Total: -55.85 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 1.88 Total: 39.07 kcal Total: -68.01 4.94 -63.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594367503.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.822 kcal (2) G-P(sol) polarization free energy of solvation -68.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds