Wall clock time and date at job start Tue Mar 31 2020 07:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47374 * 2 1 4 4 H 1.08998 * 109.46755 * 304.87575 * 3 2 1 5 5 C 1.50696 * 109.46872 * 64.87001 * 3 2 1 6 6 O 1.21289 * 120.00348 * 33.32242 * 5 3 2 7 7 N 1.34780 * 119.99930 * 213.31570 * 5 3 2 8 8 C 1.37101 * 120.00108 * 184.89300 * 7 5 3 9 9 H 1.07995 * 119.99997 * 325.73759 * 8 7 5 10 10 C 1.38955 * 119.99783 * 145.72810 * 8 7 5 11 11 N 1.31405 * 119.99470 * 157.67061 * 10 8 7 12 12 Si 1.86802 * 119.99994 * 337.67294 * 10 8 7 13 13 H 1.48500 * 109.47040 * 92.19068 * 12 10 8 14 14 H 1.48496 * 109.46683 * 212.18708 * 12 10 8 15 15 H 1.48497 * 109.47132 * 332.18774 * 12 10 8 16 16 C 1.46500 * 119.99807 * 4.89770 * 7 5 3 17 17 C 1.50698 * 109.47346 * 83.70141 * 16 7 5 18 18 O 1.20826 * 119.99673 * 5.39857 * 17 16 7 19 19 O 1.34223 * 119.99977 * 185.39384 * 17 16 7 20 20 C 1.50691 * 109.47114 * 184.87345 * 3 2 1 21 21 C 1.38245 * 119.99995 * 299.72556 * 20 3 2 22 22 C 1.38238 * 119.99866 * 179.79046 * 21 20 3 23 23 C 1.38232 * 119.99903 * 0.44013 * 22 21 20 24 24 C 1.38241 * 120.00416 * 359.81080 * 23 22 21 25 25 C 1.38235 * 119.99543 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.47184 * 183.92574 * 1 2 3 27 27 H 1.09005 * 109.46757 * 303.92462 * 1 2 3 28 28 H 1.09000 * 109.47378 * 63.92244 * 1 2 3 29 29 H 1.09000 * 109.46960 * 239.99850 * 2 1 3 30 30 H 1.09004 * 109.47149 * 120.00311 * 2 1 3 31 31 H 0.97000 * 119.99774 * 179.97438 * 11 10 8 32 32 H 1.09000 * 109.47070 * 203.70250 * 16 7 5 33 33 H 1.09000 * 109.46838 * 323.70007 * 16 7 5 34 34 H 0.96706 * 117.00062 * 180.02562 * 19 17 16 35 35 H 1.08000 * 119.99684 * 359.97438 * 21 20 3 36 36 H 1.07993 * 119.99890 * 180.27127 * 22 21 20 37 37 H 1.07998 * 119.99996 * 179.83326 * 23 22 21 38 38 H 1.07994 * 120.00327 * 179.97438 * 24 23 22 39 39 H 1.08003 * 119.99712 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6072 1.9809 -0.8431 5 6 1.6386 2.1172 1.2863 6 8 1.5766 1.4758 2.3139 7 7 1.3487 3.4334 1.2949 8 6 1.0814 4.0687 2.4801 9 1 0.5697 3.5418 3.2718 10 6 1.4691 5.3905 2.6626 11 7 0.8657 6.1338 3.5627 12 14 2.8479 6.1108 1.6284 13 1 2.2751 6.7547 0.4191 14 1 3.5871 7.1228 2.4249 15 1 3.7775 5.0275 1.2192 16 6 1.3190 4.1851 0.0379 17 6 -0.0261 4.0121 -0.6193 18 8 -0.9053 3.4124 -0.0472 19 8 -0.2474 4.5241 -1.8401 20 6 3.5421 1.4441 -0.1207 21 6 4.3137 0.8220 0.8431 22 6 5.6915 0.8198 0.7300 23 6 6.2980 1.4475 -0.3419 24 6 5.5267 2.0741 -1.3029 25 6 4.1488 2.0724 -1.1922 26 1 -0.3633 -1.0252 0.0704 27 1 -0.3633 0.5736 0.8528 28 1 -0.3634 0.4517 -0.9230 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.1365 7.0564 3.6904 32 1 1.4901 5.2420 0.2424 33 1 2.0987 3.8127 -0.6266 34 1 -1.1259 4.3879 -2.2207 35 1 3.8399 0.3352 1.6827 36 1 6.2940 0.3301 1.4806 37 1 7.3745 1.4481 -0.4287 38 1 6.0006 2.5648 -2.1401 39 1 3.5462 2.5616 -1.9432 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594724955.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:00 Heat of formation + Delta-G solvation = -87.175096 kcal Electronic energy + Delta-G solvation = -24501.000944 eV Core-core repulsion = 20988.231693 eV Total energy + Delta-G solvation = -3512.769251 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.34030 -39.40813 -38.17346 -35.82551 -35.07579 -34.20677 -32.14321 -30.88097 -30.66254 -28.12095 -27.06062 -24.81273 -22.59213 -21.91205 -21.77620 -21.21503 -18.48155 -17.79169 -17.33781 -16.82091 -16.72151 -16.02783 -15.63568 -15.16326 -14.93928 -14.46818 -14.15145 -13.94751 -13.48516 -13.21062 -12.98989 -12.85520 -12.72269 -12.45140 -12.39055 -12.07471 -11.75561 -11.65870 -11.19291 -11.04971 -10.96698 -10.78673 -10.61832 -10.52552 -10.38987 -10.14170 -9.96494 -9.22516 -8.88369 -8.72853 -8.29935 -7.96956 -6.46311 -4.02027 1.50101 1.58992 2.63651 2.89978 3.08315 3.18681 3.21381 3.71091 3.97386 4.03717 4.27216 4.80618 4.96772 5.02988 5.12991 5.22241 5.29556 5.33531 5.35474 5.50470 5.62603 5.64386 5.68791 5.79587 5.85285 5.92293 6.09782 6.14900 6.24642 6.26541 6.51274 6.60760 6.69215 6.70914 6.83504 6.84005 7.17518 7.40716 8.16909 8.29709 8.39869 8.85689 9.20996 9.60273 10.65741 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.012589 B = 0.008212 C = 0.006780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.707022 B = 3408.799078 C = 4128.505601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.074 4.074 4 H 0.079 0.921 5 C 0.495 3.505 6 O -0.543 6.543 7 N -0.449 5.449 8 C -0.313 4.313 9 H 0.112 0.888 10 C 0.058 3.942 11 N -0.856 5.856 12 Si 0.854 3.146 13 H -0.270 1.270 14 H -0.280 1.280 15 H -0.254 1.254 16 C 0.094 3.906 17 C 0.452 3.548 18 O -0.486 6.486 19 O -0.526 6.526 20 C -0.066 4.066 21 C -0.098 4.098 22 C -0.120 4.120 23 C -0.127 4.127 24 C -0.122 4.122 25 C -0.120 4.120 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.275 0.725 32 H 0.116 0.884 33 H 0.102 0.898 34 H 0.401 0.599 35 H 0.131 0.869 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.496 -5.995 -13.377 16.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.136 4.136 3 C -0.096 4.096 4 H 0.098 0.902 5 C 0.283 3.717 6 O -0.422 6.422 7 N -0.170 5.170 8 C -0.440 4.440 9 H 0.130 0.870 10 C -0.148 4.148 11 N -0.492 5.492 12 Si 0.681 3.319 13 H -0.198 1.198 14 H -0.206 1.206 15 H -0.178 1.178 16 C -0.033 4.033 17 C 0.291 3.709 18 O -0.371 6.371 19 O -0.338 6.338 20 C -0.066 4.066 21 C -0.116 4.116 22 C -0.138 4.138 23 C -0.145 4.145 24 C -0.140 4.140 25 C -0.138 4.138 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.134 0.866 33 H 0.120 0.880 34 H 0.259 0.741 35 H 0.149 0.851 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.570 -6.256 -12.347 15.322 hybrid contribution 0.024 0.811 -0.838 1.166 sum 6.594 -5.446 -13.185 15.716 Atomic orbital electron populations 1.21764 0.95255 1.01415 1.02373 1.21369 0.96266 0.93606 1.02379 1.20455 0.92326 0.98606 0.98177 0.90226 1.19834 0.80059 0.82384 0.89373 1.90549 1.54334 1.62947 1.34358 1.43359 1.62190 1.07459 1.04033 1.19090 1.37149 0.95795 0.91946 0.87048 1.25318 0.96738 0.95947 0.96771 1.69757 1.37530 1.07720 1.34145 0.87342 0.84416 0.80152 0.80006 1.19812 1.20623 1.17814 1.21698 0.91212 1.01578 0.88777 1.24636 0.92182 0.75466 0.78588 1.90723 1.45379 1.38008 1.62968 1.84577 1.40813 1.74616 1.33816 1.19560 0.93945 0.97967 0.95170 1.21200 0.93616 0.98455 0.98375 1.21139 0.94705 0.99862 0.98048 1.21102 0.99523 0.98769 0.95066 1.21041 0.93673 1.00031 0.99274 1.21056 0.94981 0.99788 0.97962 0.92894 0.91417 0.93488 0.91934 0.90461 0.91427 0.86644 0.88033 0.74106 0.85100 0.86141 0.86410 0.86214 0.86170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.78 37.16 0.36 -2.11 16 2 C -0.10 -1.58 4.89 -26.73 -0.13 -1.71 16 3 C -0.07 -1.32 1.62 -92.93 -0.15 -1.47 16 4 H 0.08 1.31 5.55 -51.93 -0.29 1.02 16 5 C 0.50 11.43 5.14 -10.99 -0.06 11.37 16 6 O -0.54 -14.20 15.23 5.55 0.08 -14.11 16 7 N -0.45 -10.93 1.77 -116.10 -0.21 -11.14 16 8 C -0.31 -8.90 9.46 -14.93 -0.14 -9.04 16 9 H 0.11 3.59 7.80 -52.49 -0.41 3.18 16 10 C 0.06 1.60 5.29 -17.47 -0.09 1.51 16 11 N -0.86 -24.66 13.96 55.50 0.77 -23.88 16 12 Si 0.85 19.61 25.01 -169.99 -4.25 15.36 16 13 H -0.27 -5.68 6.52 56.52 0.37 -5.31 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 15 H -0.25 -5.76 7.11 56.52 0.40 -5.35 16 16 C 0.09 1.91 4.22 -5.19 -0.02 1.89 16 17 C 0.45 8.64 7.67 36.00 0.28 8.92 16 18 O -0.49 -10.86 17.13 -18.75 -0.32 -11.19 16 19 O -0.53 -7.53 13.42 -39.24 -0.53 -8.06 16 20 C -0.07 -1.09 4.70 -104.62 -0.49 -1.59 16 21 C -0.10 -1.63 8.86 -39.58 -0.35 -1.98 16 22 C -0.12 -1.68 10.05 -39.58 -0.40 -2.08 16 23 C -0.13 -1.61 10.05 -39.58 -0.40 -2.01 16 24 C -0.12 -1.57 10.05 -39.58 -0.40 -1.96 16 25 C -0.12 -1.72 9.10 -39.58 -0.36 -2.08 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 1.37 7.06 -51.93 -0.37 1.00 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 1.31 7.12 -51.93 -0.37 0.94 16 31 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.12 2.47 3.07 -51.93 -0.16 2.31 16 33 H 0.10 1.74 5.76 -51.93 -0.30 1.44 16 34 H 0.40 3.85 9.10 45.56 0.41 4.27 16 35 H 0.13 2.29 7.21 -52.49 -0.38 1.91 16 36 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 37 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 38 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.12 1.46 7.74 -52.48 -0.41 1.05 16 LS Contribution 325.45 15.07 4.90 4.90 Total: -1.00 -33.65 325.45 -5.86 -39.51 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -3.97 Total: 10.94 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -2.35 Total: -2.33 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.57 Total: -35.02 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -0.76 Total: -33.36 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.25 Total: 15.36 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.65 -5.86 -39.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594724955.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.668 kcal (2) G-P(sol) polarization free energy of solvation -33.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds