Wall clock time and date at job start Tue Mar 31 2020 07:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47374 * 2 1 4 4 H 1.08998 * 109.46755 * 304.87575 * 3 2 1 5 5 C 1.50696 * 109.46872 * 64.87001 * 3 2 1 6 6 O 1.21289 * 120.00348 * 33.32242 * 5 3 2 7 7 N 1.34780 * 119.99930 * 213.31570 * 5 3 2 8 8 C 1.37101 * 120.00108 * 184.89300 * 7 5 3 9 9 H 1.07995 * 119.99997 * 325.73759 * 8 7 5 10 10 C 1.38955 * 119.99783 * 145.72810 * 8 7 5 11 11 N 1.31405 * 119.99470 * 157.67061 * 10 8 7 12 12 Si 1.86802 * 119.99994 * 337.67294 * 10 8 7 13 13 H 1.48500 * 109.47040 * 92.19068 * 12 10 8 14 14 H 1.48496 * 109.46683 * 212.18708 * 12 10 8 15 15 H 1.48497 * 109.47132 * 332.18774 * 12 10 8 16 16 C 1.46500 * 119.99807 * 4.89770 * 7 5 3 17 17 C 1.50698 * 109.47346 * 83.70141 * 16 7 5 18 18 O 1.20826 * 119.99673 * 5.39857 * 17 16 7 19 19 O 1.34223 * 119.99977 * 185.39384 * 17 16 7 20 20 C 1.50691 * 109.47114 * 184.87345 * 3 2 1 21 21 C 1.38245 * 119.99995 * 299.72556 * 20 3 2 22 22 C 1.38238 * 119.99866 * 179.79046 * 21 20 3 23 23 C 1.38232 * 119.99903 * 0.44013 * 22 21 20 24 24 C 1.38241 * 120.00416 * 359.81080 * 23 22 21 25 25 C 1.38235 * 119.99543 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.47184 * 183.92574 * 1 2 3 27 27 H 1.09005 * 109.46757 * 303.92462 * 1 2 3 28 28 H 1.09000 * 109.47378 * 63.92244 * 1 2 3 29 29 H 1.09000 * 109.46960 * 239.99850 * 2 1 3 30 30 H 1.09004 * 109.47149 * 120.00311 * 2 1 3 31 31 H 0.97000 * 119.99774 * 179.97438 * 11 10 8 32 32 H 1.09000 * 109.47070 * 203.70250 * 16 7 5 33 33 H 1.09000 * 109.46838 * 323.70007 * 16 7 5 34 34 H 0.96706 * 117.00062 * 180.02562 * 19 17 16 35 35 H 1.08000 * 119.99684 * 359.97438 * 21 20 3 36 36 H 1.07993 * 119.99890 * 180.27127 * 22 21 20 37 37 H 1.07998 * 119.99996 * 179.83326 * 23 22 21 38 38 H 1.07994 * 120.00327 * 179.97438 * 24 23 22 39 39 H 1.08003 * 119.99712 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6072 1.9809 -0.8431 5 6 1.6386 2.1172 1.2863 6 8 1.5766 1.4758 2.3139 7 7 1.3487 3.4334 1.2949 8 6 1.0814 4.0687 2.4801 9 1 0.5697 3.5418 3.2718 10 6 1.4691 5.3905 2.6626 11 7 0.8657 6.1338 3.5627 12 14 2.8479 6.1108 1.6284 13 1 2.2751 6.7547 0.4191 14 1 3.5871 7.1228 2.4249 15 1 3.7775 5.0275 1.2192 16 6 1.3190 4.1851 0.0379 17 6 -0.0261 4.0121 -0.6193 18 8 -0.9053 3.4124 -0.0472 19 8 -0.2474 4.5241 -1.8401 20 6 3.5421 1.4441 -0.1207 21 6 4.3137 0.8220 0.8431 22 6 5.6915 0.8198 0.7300 23 6 6.2980 1.4475 -0.3419 24 6 5.5267 2.0741 -1.3029 25 6 4.1488 2.0724 -1.1922 26 1 -0.3633 -1.0252 0.0704 27 1 -0.3633 0.5736 0.8528 28 1 -0.3634 0.4517 -0.9230 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.1365 7.0564 3.6904 32 1 1.4901 5.2420 0.2424 33 1 2.0987 3.8127 -0.6266 34 1 -1.1259 4.3879 -2.2207 35 1 3.8399 0.3352 1.6827 36 1 6.2940 0.3301 1.4806 37 1 7.3745 1.4481 -0.4287 38 1 6.0006 2.5648 -2.1401 39 1 3.5462 2.5616 -1.9432 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594724955.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:00 Heat of formation + Delta-G solvation = -110.516182 kcal Electronic energy + Delta-G solvation = -24502.013089 eV Core-core repulsion = 20988.231693 eV Total energy + Delta-G solvation = -3513.781396 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.89158 -40.78332 -39.56793 -37.32999 -36.74373 -35.70743 -34.19171 -32.04685 -31.72536 -29.82666 -28.55797 -26.58636 -23.73171 -23.39797 -23.01399 -22.61523 -20.10927 -19.25296 -19.20763 -18.49920 -17.91061 -17.49207 -17.26194 -16.60687 -16.31845 -15.81170 -15.68619 -15.45438 -14.86459 -14.67618 -14.38225 -14.32600 -14.24681 -14.05298 -13.82460 -13.45626 -13.31930 -12.88530 -12.77394 -12.62156 -12.39653 -12.23370 -11.96735 -11.95187 -11.77912 -11.72697 -11.68995 -11.11796 -10.54089 -9.96130 -9.78282 -9.56536 -8.55999 -6.18797 0.41451 0.53459 1.10110 1.11824 1.30191 1.42666 1.61925 2.04461 2.14002 2.56967 2.85600 2.97322 3.61866 3.69322 3.78069 3.87520 3.99298 4.11579 4.20271 4.22852 4.32273 4.38893 4.43525 4.54235 4.69219 4.75826 4.81653 4.95890 5.11464 5.19188 5.21893 5.32549 5.42302 5.58484 5.59069 5.65096 5.71775 5.98656 6.14746 6.40743 6.83469 6.98005 7.17455 7.71867 8.61803 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.012589 B = 0.008212 C = 0.006780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.707022 B = 3408.799078 C = 4128.505601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.061 4.061 4 H 0.099 0.901 5 C 0.490 3.510 6 O -0.593 6.593 7 N -0.462 5.462 8 C -0.335 4.335 9 H 0.042 0.958 10 C 0.008 3.992 11 N -0.907 5.907 12 Si 0.929 3.071 13 H -0.226 1.226 14 H -0.279 1.279 15 H -0.245 1.245 16 C 0.086 3.914 17 C 0.464 3.536 18 O -0.529 6.529 19 O -0.501 6.501 20 C -0.090 4.090 21 C -0.126 4.126 22 C -0.128 4.128 23 C -0.122 4.122 24 C -0.117 4.117 25 C -0.122 4.122 26 H 0.073 0.927 27 H 0.017 0.983 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.057 0.943 31 H 0.282 0.718 32 H 0.113 0.887 33 H 0.144 0.856 34 H 0.427 0.573 35 H 0.101 0.899 36 H 0.135 0.865 37 H 0.151 0.849 38 H 0.158 0.842 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.297 -5.005 -18.343 21.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.133 4.133 3 C -0.082 4.082 4 H 0.117 0.883 5 C 0.280 3.720 6 O -0.475 6.475 7 N -0.183 5.183 8 C -0.462 4.462 9 H 0.060 0.940 10 C -0.194 4.194 11 N -0.544 5.544 12 Si 0.750 3.250 13 H -0.151 1.151 14 H -0.206 1.206 15 H -0.168 1.168 16 C -0.039 4.039 17 C 0.304 3.696 18 O -0.418 6.418 19 O -0.314 6.314 20 C -0.090 4.090 21 C -0.144 4.144 22 C -0.146 4.146 23 C -0.139 4.139 24 C -0.135 4.135 25 C -0.140 4.140 26 H 0.092 0.908 27 H 0.036 0.964 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.130 0.870 33 H 0.161 0.839 34 H 0.289 0.711 35 H 0.119 0.881 36 H 0.153 0.847 37 H 0.169 0.831 38 H 0.175 0.825 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.348 -5.255 -17.377 20.419 hybrid contribution -0.896 0.438 0.724 1.232 sum 8.452 -4.817 -16.653 19.286 Atomic orbital electron populations 1.21714 0.95709 1.02020 1.00821 1.21396 0.95752 0.93021 1.03177 1.20390 0.93990 0.98800 0.95033 0.88252 1.20888 0.78222 0.81914 0.90941 1.90508 1.55968 1.64103 1.36930 1.43356 1.62655 1.08106 1.04226 1.18603 1.38139 0.96356 0.93137 0.94034 1.26178 0.98797 0.95698 0.98710 1.69886 1.39237 1.08519 1.36746 0.86169 0.79881 0.79436 0.79549 1.15068 1.20555 1.16804 1.21822 0.93406 1.00970 0.87715 1.24169 0.91108 0.74789 0.79506 1.90741 1.46446 1.40113 1.64451 1.84474 1.42792 1.73073 1.31103 1.19532 0.92649 1.00036 0.96793 1.21158 0.95102 0.99918 0.98271 1.21377 0.93710 1.00224 0.99303 1.21540 1.01346 0.97134 0.93919 1.21517 0.93072 0.98984 0.99932 1.21387 0.96178 0.99012 0.97423 0.90766 0.96397 0.91919 0.88164 0.92461 0.90822 0.87011 0.83905 0.71089 0.88107 0.84742 0.83143 0.82475 0.83410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.81 9.78 71.98 0.70 -4.11 16 2 C -0.10 -3.05 4.89 30.59 0.15 -2.90 16 3 C -0.06 -2.12 1.62 -12.29 -0.02 -2.14 16 4 H 0.10 3.00 5.55 -2.39 -0.01 2.98 16 5 C 0.49 23.60 5.14 87.66 0.45 24.05 16 6 O -0.59 -33.87 15.23 -3.06 -0.05 -33.91 16 7 N -0.46 -23.11 1.77 -639.60 -1.13 -24.24 16 8 C -0.33 -20.33 9.46 84.04 0.80 -19.54 16 9 H 0.04 3.01 7.80 -2.91 -0.02 2.99 16 10 C 0.01 0.47 5.29 84.93 0.45 0.92 16 11 N -0.91 -54.68 13.96 21.66 0.30 -54.38 16 12 Si 0.93 39.71 25.01 68.60 1.72 41.43 16 13 H -0.23 -8.07 6.52 99.48 0.65 -7.42 16 14 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 15 H -0.24 -10.05 7.11 99.48 0.71 -9.34 16 16 C 0.09 3.32 4.22 85.63 0.36 3.68 16 17 C 0.46 16.77 7.67 71.24 0.55 17.32 16 18 O -0.53 -23.80 17.13 21.97 0.38 -23.43 16 19 O -0.50 -12.14 13.42 -51.35 -0.69 -12.83 16 20 C -0.09 -2.80 4.70 -19.87 -0.09 -2.90 16 21 C -0.13 -4.17 8.86 22.27 0.20 -3.97 16 22 C -0.13 -3.37 10.05 22.27 0.22 -3.15 16 23 C -0.12 -2.56 10.05 22.27 0.22 -2.33 16 24 C -0.12 -2.35 10.05 22.27 0.22 -2.12 16 25 C -0.12 -2.92 9.10 22.27 0.20 -2.72 16 26 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.02 0.74 7.06 -2.38 -0.02 0.72 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.06 2.05 7.12 -2.38 -0.02 2.03 16 31 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 32 H 0.11 4.41 3.07 -2.39 -0.01 4.40 16 33 H 0.14 4.27 5.76 -2.39 -0.01 4.25 16 34 H 0.43 6.33 9.10 -74.05 -0.67 5.65 16 35 H 0.10 3.83 7.21 -2.91 -0.02 3.81 16 36 H 0.13 2.99 8.06 -2.91 -0.02 2.96 16 37 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 38 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 39 H 0.15 2.63 7.74 -2.91 -0.02 2.61 16 Total: -1.00 -83.01 325.45 5.29 -77.72 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: 0.35 Total: 29.55 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 4.41 Total: 0.10 kcal Atomic # 7 Polarization: -77.79 SS G_CDS: -0.83 Total: -78.62 kcal Atomic # 8 Polarization: -69.81 SS G_CDS: -0.36 Total: -70.17 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 1.72 Total: 41.43 kcal Total: -83.01 5.29 -77.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594724955.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.795 kcal (2) G-P(sol) polarization free energy of solvation -83.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds