Wall clock time and date at job start Tue Mar 31 2020 07:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46940 * 2 1 4 4 H 1.08997 * 109.46927 * 305.68610 * 3 2 1 5 5 C 1.50701 * 109.46645 * 185.68859 * 3 2 1 6 6 O 1.21291 * 119.99784 * 268.13731 * 5 3 2 7 7 N 1.34779 * 119.99699 * 88.14532 * 5 3 2 8 8 C 1.37099 * 119.99402 * 176.04889 * 7 5 3 9 9 H 1.07996 * 120.00729 * 337.59661 * 8 7 5 10 10 C 1.38951 * 119.99559 * 157.32244 * 8 7 5 11 11 N 1.31417 * 120.00003 * 352.34751 * 10 8 7 12 12 Si 1.86806 * 120.00052 * 172.35105 * 10 8 7 13 13 H 1.48493 * 109.47022 * 89.99933 * 12 10 8 14 14 H 1.48495 * 109.46941 * 210.00007 * 12 10 8 15 15 H 1.48500 * 109.46905 * 329.99520 * 12 10 8 16 16 C 1.46496 * 120.00139 * 356.05028 * 7 5 3 17 17 C 1.50699 * 109.46848 * 272.96925 * 16 7 5 18 18 O 1.20822 * 120.00373 * 0.02562 * 17 16 7 19 19 O 1.34237 * 119.99659 * 180.02562 * 17 16 7 20 20 C 1.50696 * 109.46745 * 65.68923 * 3 2 1 21 21 C 1.38235 * 120.00465 * 59.72919 * 20 3 2 22 22 C 1.38226 * 120.00414 * 179.78381 * 21 20 3 23 23 C 1.38238 * 119.99859 * 0.43680 * 22 21 20 24 24 C 1.38238 * 120.00070 * 359.81682 * 23 22 21 25 25 C 1.38237 * 119.99710 * 239.99200 * 20 3 2 26 26 H 1.08995 * 109.47218 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47416 * 299.99931 * 1 2 3 28 28 H 1.09004 * 109.47225 * 60.00470 * 1 2 3 29 29 H 1.08994 * 109.47027 * 239.99895 * 2 1 3 30 30 H 1.09000 * 109.46626 * 119.99946 * 2 1 3 31 31 H 0.97005 * 119.99729 * 180.02562 * 11 10 8 32 32 H 1.08997 * 109.47063 * 32.97379 * 16 7 5 33 33 H 1.08999 * 109.47057 * 152.96999 * 16 7 5 34 34 H 0.96693 * 116.99754 * 180.02562 * 19 17 16 35 35 H 1.08002 * 119.99561 * 359.97438 * 21 20 3 36 36 H 1.07995 * 120.00621 * 180.27226 * 22 21 20 37 37 H 1.07998 * 120.00035 * 179.82912 * 23 22 21 38 38 H 1.08000 * 119.99966 * 179.97438 * 24 23 22 39 39 H 1.07994 * 120.00067 * 359.97438 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5959 1.9849 -0.8347 5 6 3.5404 1.4448 -0.1408 6 8 4.2423 1.4452 0.8483 7 7 4.1022 1.4466 -1.3660 8 6 5.4645 1.5305 -1.4951 9 1 6.0581 1.9483 -0.6955 10 6 6.0820 1.0726 -2.6526 11 7 5.3836 0.4244 -3.5576 12 14 7.9050 1.3785 -2.9223 13 1 8.6854 0.2491 -2.3563 14 1 8.1784 1.4889 -4.3777 15 1 8.3003 2.6408 -2.2473 16 6 3.2572 1.3590 -2.5594 17 6 2.9984 -0.0892 -2.8864 18 8 3.4709 -0.9588 -2.1934 19 8 2.2429 -0.4129 -3.9477 20 6 1.6559 2.1110 1.2948 21 6 2.1003 1.5948 2.4977 22 6 1.7517 2.2106 3.6851 23 6 0.9511 3.3374 3.6703 24 6 0.5023 3.8507 2.4677 25 6 0.8546 3.2374 1.2800 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 5.8148 0.1045 -4.3655 32 1 2.3097 1.8641 -2.3717 33 1 3.7632 1.8362 -3.3987 34 1 2.1046 -1.3548 -4.1171 35 1 2.7225 0.7121 2.5095 36 1 2.1025 1.8099 4.6246 37 1 0.6764 3.8169 4.5982 38 1 -0.1235 4.7308 2.4562 39 1 0.5042 3.6385 0.3405 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594724956.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:02 Heat of formation + Delta-G solvation = -91.589662 kcal Electronic energy + Delta-G solvation = -24338.476351 eV Core-core repulsion = 20825.515670 eV Total energy + Delta-G solvation = -3512.960681 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.96864 -38.94913 -37.81796 -35.26819 -34.71337 -34.23550 -31.68297 -30.58655 -30.27847 -27.79012 -27.07211 -24.51004 -22.60046 -21.92186 -21.18439 -20.75011 -18.73065 -17.12620 -16.94997 -16.54296 -16.23165 -15.58535 -15.11104 -14.77598 -14.64359 -14.33294 -13.99878 -13.81239 -13.56411 -13.07175 -12.91970 -12.53717 -12.22427 -12.08656 -11.95331 -11.65779 -11.50599 -11.22388 -11.13968 -10.94822 -10.86143 -10.57838 -10.49712 -10.41726 -10.24422 -9.93090 -9.55848 -9.06475 -8.68958 -8.43127 -8.20699 -7.88232 -6.43951 -3.97581 1.70163 1.79431 3.14348 3.22885 3.27735 3.48899 3.67974 4.00431 4.20834 4.27117 4.73257 5.01486 5.07789 5.19477 5.28537 5.41790 5.44888 5.48892 5.58744 5.68233 5.80764 5.92598 5.98032 6.02167 6.13681 6.26584 6.34237 6.43537 6.48768 6.50674 6.62479 6.67879 6.78753 6.88506 7.09652 7.36776 7.48873 7.56662 7.99740 8.36059 9.07534 9.09320 9.29171 9.82513 10.64518 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.018316 B = 0.005988 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.350366 B = 4674.702156 C = 5662.824714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.069 4.069 4 H 0.086 0.914 5 C 0.472 3.528 6 O -0.565 6.565 7 N -0.434 5.434 8 C -0.296 4.296 9 H 0.104 0.896 10 C 0.030 3.970 11 N -0.894 5.894 12 Si 0.936 3.064 13 H -0.278 1.278 14 H -0.283 1.283 15 H -0.270 1.270 16 C 0.148 3.852 17 C 0.498 3.502 18 O -0.504 6.504 19 O -0.536 6.536 20 C -0.053 4.053 21 C -0.076 4.076 22 C -0.128 4.128 23 C -0.130 4.130 24 C -0.130 4.130 25 C -0.118 4.118 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.271 0.729 32 H 0.073 0.927 33 H 0.127 0.873 34 H 0.390 0.610 35 H 0.127 0.873 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.235 2.841 2.894 11.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.091 4.091 4 H 0.104 0.896 5 C 0.260 3.740 6 O -0.447 6.447 7 N -0.154 5.154 8 C -0.424 4.424 9 H 0.121 0.879 10 C -0.171 4.171 11 N -0.536 5.536 12 Si 0.763 3.237 13 H -0.204 1.204 14 H -0.209 1.209 15 H -0.194 1.194 16 C 0.022 3.978 17 C 0.338 3.662 18 O -0.390 6.390 19 O -0.347 6.347 20 C -0.054 4.054 21 C -0.094 4.094 22 C -0.146 4.146 23 C -0.148 4.148 24 C -0.148 4.148 25 C -0.136 4.136 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.145 0.855 34 H 0.246 0.754 35 H 0.145 0.855 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.593 2.955 3.480 11.535 hybrid contribution 0.916 -0.691 -0.591 1.290 sum -9.677 2.265 2.889 10.350 Atomic orbital electron populations 1.21773 0.95716 1.01254 1.01670 1.21623 0.95462 0.94233 1.04139 1.20367 0.95425 0.97574 0.95711 0.89618 1.19888 0.88524 0.81786 0.83800 1.90524 1.63540 1.53883 1.36799 1.43340 1.06335 1.63399 1.02288 1.19700 0.81061 1.38091 1.03514 0.87875 1.25279 1.00500 0.95056 0.96284 1.69468 1.36740 1.36909 1.10465 0.85759 0.81729 0.78928 0.77259 1.20390 1.20857 1.19424 1.20644 0.94774 0.89746 0.92679 1.23589 0.72695 0.93549 0.76320 1.90584 1.46657 1.50768 1.50971 1.84521 1.67635 1.32863 1.49694 1.19486 0.96485 0.95136 0.94261 1.21103 0.96710 1.00163 0.91446 1.21108 0.98910 0.96558 0.98017 1.21030 0.99188 0.96992 0.97592 1.20968 1.01188 1.00017 0.92609 1.21008 0.98881 0.95723 0.98037 0.92924 0.92665 0.92876 0.90157 0.91478 0.91804 0.90905 0.85501 0.75357 0.85540 0.86594 0.86823 0.86645 0.86467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.73 37.16 0.36 -1.67 16 2 C -0.12 -2.06 5.28 -26.73 -0.14 -2.20 16 3 C -0.07 -1.29 1.71 -92.92 -0.16 -1.45 16 4 H 0.09 1.43 5.77 -51.93 -0.30 1.13 16 5 C 0.47 11.33 6.61 -10.98 -0.07 11.26 16 6 O -0.57 -15.35 14.30 5.55 0.08 -15.27 16 7 N -0.43 -10.80 2.13 -116.10 -0.25 -11.05 16 8 C -0.30 -8.08 9.28 -14.93 -0.14 -8.22 16 9 H 0.10 2.94 7.43 -52.49 -0.39 2.55 16 10 C 0.03 0.78 5.17 -17.47 -0.09 0.69 16 11 N -0.89 -23.18 8.41 55.50 0.47 -22.72 16 12 Si 0.94 20.80 29.56 -169.99 -5.02 15.77 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 15 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 16 C 0.15 3.18 5.05 -5.20 -0.03 3.15 16 17 C 0.50 10.80 4.77 36.01 0.17 10.98 16 18 O -0.50 -12.74 14.91 -18.75 -0.28 -13.02 16 19 O -0.54 -9.51 13.42 -39.28 -0.53 -10.04 16 20 C -0.05 -0.93 3.68 -104.63 -0.39 -1.32 16 21 C -0.08 -1.36 7.85 -39.59 -0.31 -1.67 16 22 C -0.13 -1.94 10.05 -39.59 -0.40 -2.34 16 23 C -0.13 -1.76 10.05 -39.58 -0.40 -2.16 16 24 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 25 C -0.12 -1.78 9.67 -39.58 -0.38 -2.17 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.74 7.40 -51.93 -0.38 0.36 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 1.57 4.35 -51.93 -0.23 1.35 16 30 H 0.07 1.25 7.19 -51.93 -0.37 0.87 16 31 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.07 1.29 5.88 -51.93 -0.31 0.98 16 33 H 0.13 2.84 6.59 -51.93 -0.34 2.50 16 34 H 0.39 5.35 9.10 45.56 0.41 5.77 16 35 H 0.13 2.46 6.79 -52.49 -0.36 2.10 16 36 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.11 1.23 8.06 -52.49 -0.42 0.80 16 38 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.12 1.52 7.95 -52.49 -0.42 1.10 16 LS Contribution 320.22 15.07 4.83 4.83 Total: -1.00 -32.53 320.22 -7.00 -39.54 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -3.93 Total: 11.24 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -2.37 Total: 0.73 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.22 Total: -33.77 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -0.73 Total: -38.33 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.53 -7.00 -39.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594724956.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.054 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds