Wall clock time and date at job start Tue Mar 31 2020 06:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47229 * 2 1 4 4 C 1.52998 * 109.47229 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.46839 * 304.99744 * 4 3 2 6 6 N 1.46494 * 109.47343 * 64.99883 * 4 3 2 7 7 C 1.34776 * 120.00009 * 204.99929 * 6 4 3 8 8 O 1.21609 * 120.00181 * 0.02562 * 7 6 4 9 9 C 1.47435 * 119.99851 * 180.02562 * 7 6 4 10 10 C 1.39235 * 120.28458 * 356.67675 * 9 7 6 11 11 C 1.38211 * 120.09301 * 180.27836 * 10 9 7 12 12 C 1.38829 * 120.67901 * 359.70331 * 11 10 9 13 13 C 1.37601 * 120.56863 * 359.97438 * 12 11 10 14 14 C 1.40712 * 119.88037 * 0.02742 * 13 12 11 15 15 C 1.40885 * 120.32562 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99856 * 145.79790 * 15 14 13 17 17 C 1.40272 * 120.00496 * 325.79403 * 15 14 13 18 18 N 1.30635 * 119.99551 * 340.74470 * 17 15 14 19 19 Si 1.86798 * 120.00264 * 160.74014 * 17 15 14 20 20 H 1.48499 * 109.47225 * 180.02562 * 19 17 15 21 21 H 1.48495 * 109.47108 * 300.00180 * 19 17 15 22 22 H 1.48501 * 109.46970 * 60.00492 * 19 17 15 23 23 C 1.50703 * 109.47392 * 185.00200 * 4 3 2 24 24 O 1.20821 * 119.99766 * 240.00306 * 23 4 3 25 25 O 1.34226 * 119.99800 * 59.99413 * 23 4 3 26 26 H 1.09001 * 109.46998 * 60.00401 * 1 2 3 27 27 H 1.08997 * 109.47465 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47381 * 299.99865 * 1 2 3 29 29 H 1.09006 * 109.47252 * 239.99742 * 2 1 3 30 30 H 1.09002 * 109.47081 * 120.00382 * 2 1 3 31 31 H 1.09006 * 109.47214 * 59.99719 * 3 2 1 32 32 H 1.09002 * 109.47400 * 300.00186 * 3 2 1 33 33 H 0.96994 * 119.99831 * 25.00001 * 6 4 3 34 34 H 1.08001 * 119.94814 * 0.02562 * 10 9 7 35 35 H 1.08002 * 119.66230 * 179.71940 * 11 10 9 36 36 H 1.08002 * 119.72114 * 180.02562 * 12 11 10 37 37 H 1.08002 * 120.06038 * 180.02562 * 13 12 11 38 38 H 0.96991 * 119.99936 * 354.83202 * 18 17 15 39 39 H 0.96705 * 117.00092 * 180.02562 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9329 0.8531 0.8428 6 7 4.0589 0.8585 -1.2508 7 6 5.2809 0.2920 -1.2979 8 8 5.9775 0.2651 -0.3015 9 6 5.7731 -0.2951 -2.5575 10 6 4.9544 -0.3295 -3.6833 11 6 5.4179 -0.8861 -4.8604 12 6 6.7010 -1.4103 -4.9391 13 6 7.5356 -1.3848 -3.8454 14 6 7.0881 -0.8239 -2.6350 15 6 7.9347 -0.7933 -1.5093 16 1 7.8849 0.0355 -0.8185 17 6 8.8421 -1.8393 -1.2854 18 7 8.6644 -2.9943 -1.8692 19 14 10.3048 -1.5805 -0.1527 20 1 11.1056 -2.8292 -0.0852 21 1 11.1499 -0.4789 -0.6793 22 1 9.8218 -1.2276 1.2066 23 6 4.0723 2.8579 0.1245 24 8 4.7673 3.3303 -0.7436 25 8 3.7475 3.5936 1.1992 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.5031 0.8796 -2.0454 34 1 3.9544 0.0756 -3.6353 35 1 4.7753 -0.9132 -5.7281 36 1 7.0474 -1.8412 -5.8669 37 1 8.5324 -1.7946 -3.9159 38 1 7.8663 -3.1532 -2.3971 39 1 4.0930 4.4962 1.2340 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595998220.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:42 Heat of formation + Delta-G solvation = -126.337891 kcal Electronic energy + Delta-G solvation = -23397.669327 eV Core-core repulsion = 19883.201850 eV Total energy + Delta-G solvation = -3514.467477 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.39728 -38.88756 -37.19971 -35.93455 -35.85648 -34.02962 -33.00577 -30.51113 -29.52147 -28.76200 -25.37215 -25.00990 -22.73458 -21.52180 -21.18569 -20.57762 -19.66953 -18.09815 -17.93865 -16.77125 -16.41431 -15.80969 -15.37658 -14.78171 -14.73765 -14.14863 -14.07152 -13.76739 -13.65605 -13.40356 -13.16427 -12.68024 -12.47968 -12.24800 -11.90669 -11.82640 -11.55695 -11.31933 -11.18565 -11.14033 -10.93069 -10.78660 -10.75447 -10.36495 -10.35511 -10.17292 -9.63726 -9.08379 -8.69236 -8.57324 -7.79966 -7.61279 -7.15933 -4.46915 2.20371 2.38018 2.73978 2.99655 3.20706 3.31385 3.41418 3.76407 4.04192 4.08956 4.57621 4.64196 4.80731 4.90354 5.25422 5.36909 5.39638 5.46760 5.53685 5.68352 5.74536 5.85737 5.94071 5.99908 6.08566 6.16077 6.21666 6.46653 6.59959 6.70884 6.84995 6.98852 7.26784 7.48435 7.58668 7.71414 7.87487 8.04113 8.06082 8.19486 8.27513 8.72225 8.85085 9.25610 10.03642 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.014147 B = 0.005374 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.755805 B = 5209.402782 C = 6065.642706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.119 4.119 4 C 0.163 3.837 5 H 0.124 0.876 6 N -0.726 5.726 7 C 0.571 3.429 8 O -0.534 6.534 9 C -0.263 4.263 10 C -0.041 4.041 11 C -0.258 4.258 12 C -0.075 4.075 13 C -0.200 4.200 14 C 0.122 3.878 15 C -0.465 4.465 16 H 0.105 0.895 17 C 0.032 3.968 18 N -0.793 5.793 19 Si 1.070 2.930 20 H -0.274 1.274 21 H -0.274 1.274 22 H -0.273 1.273 23 C 0.461 3.539 24 O -0.499 6.499 25 O -0.521 6.521 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.398 0.602 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.298 0.702 39 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.260 6.128 3.541 14.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.157 4.157 4 C 0.055 3.945 5 H 0.141 0.859 6 N -0.381 5.381 7 C 0.366 3.634 8 O -0.411 6.411 9 C -0.268 4.268 10 C -0.060 4.060 11 C -0.278 4.278 12 C -0.094 4.094 13 C -0.219 4.219 14 C 0.117 3.883 15 C -0.492 4.492 16 H 0.122 0.878 17 C -0.190 4.190 18 N -0.416 5.416 19 Si 0.893 3.107 20 H -0.199 1.199 21 H -0.200 1.200 22 H -0.198 1.198 23 C 0.300 3.700 24 O -0.384 6.384 25 O -0.333 6.333 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.233 0.767 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.125 0.875 38 H 0.112 0.888 39 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -10.332 5.030 4.581 12.371 hybrid contribution -1.483 1.471 -1.202 2.410 sum -11.815 6.501 3.379 13.903 Atomic orbital electron populations 1.21758 0.95561 1.01801 1.01680 1.21532 0.95796 0.95536 1.03382 1.21848 0.91136 0.98905 1.03802 1.20280 0.94934 0.87298 0.92020 0.85883 1.45854 1.19851 1.61017 1.11420 1.18419 0.79191 0.76525 0.89230 1.90681 1.55214 1.58369 1.36872 1.19285 0.96156 1.18796 0.92590 1.20702 0.96432 0.95902 0.92993 1.20238 0.97673 1.12251 0.97616 1.20748 0.94116 0.97550 0.96989 1.21252 0.99382 1.08260 0.92969 1.17488 0.89432 0.88570 0.92772 1.21176 1.13100 1.07465 1.07473 0.87765 1.27263 1.01473 0.92176 0.98082 1.70390 1.27735 1.22590 1.20867 0.83563 0.74271 0.76922 0.75929 1.19895 1.19955 1.19810 1.24467 0.77562 0.89443 0.78556 1.90736 1.34674 1.72133 1.40905 1.84532 1.72464 1.30641 1.45614 0.92774 0.92553 0.92739 0.91097 0.91343 0.89343 0.91033 0.76654 0.89141 0.88847 0.88838 0.87498 0.88804 0.73747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.12 -1.27 5.82 -26.74 -0.16 -1.42 16 3 C -0.12 -1.24 4.72 -26.74 -0.13 -1.37 16 4 C 0.16 2.43 2.48 -69.08 -0.17 2.26 16 5 H 0.12 1.96 7.58 -51.93 -0.39 1.56 16 6 N -0.73 -12.82 4.01 -56.01 -0.22 -13.05 16 7 C 0.57 13.31 7.56 -12.52 -0.09 13.21 16 8 O -0.53 -14.12 13.22 5.27 0.07 -14.05 16 9 C -0.26 -6.47 5.92 -104.36 -0.62 -7.09 16 10 C -0.04 -0.88 9.53 -39.22 -0.37 -1.25 16 11 C -0.26 -5.43 10.03 -39.37 -0.39 -5.83 16 12 C -0.08 -1.67 10.01 -39.60 -0.40 -2.07 16 13 C -0.20 -5.01 7.87 -38.88 -0.31 -5.31 16 14 C 0.12 3.28 5.17 -106.54 -0.55 2.73 16 15 C -0.47 -12.95 7.65 -37.82 -0.29 -13.24 16 16 H 0.10 3.06 5.93 -52.48 -0.31 2.75 16 17 C 0.03 0.83 5.04 -17.30 -0.09 0.74 16 18 N -0.79 -21.24 12.57 55.56 0.70 -20.54 16 19 Si 1.07 22.78 29.98 -169.99 -5.10 17.69 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 C 0.46 7.32 7.66 36.01 0.28 7.60 16 24 O -0.50 -9.98 17.08 -18.75 -0.32 -10.30 16 25 O -0.52 -6.19 13.23 -39.25 -0.52 -6.71 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.80 7.75 -51.93 -0.40 0.40 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.80 7.99 -51.93 -0.42 0.38 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.40 6.12 6.64 -40.82 -0.27 5.85 16 34 H 0.09 1.57 6.41 -52.49 -0.34 1.24 16 35 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 37 H 0.11 2.73 6.94 -52.49 -0.36 2.37 16 38 H 0.30 8.15 6.55 -40.82 -0.27 7.89 16 39 H 0.40 3.18 9.10 45.56 0.41 3.59 16 LS Contribution 332.51 15.07 5.01 5.01 Total: -1.00 -32.99 332.51 -7.40 -40.39 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -4.10 Total: 13.48 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -2.92 Total: -11.92 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.47 Total: -33.59 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.77 Total: -31.07 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.10 Total: 17.69 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.99 -7.40 -40.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595998220.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.947 kcal (2) G-P(sol) polarization free energy of solvation -32.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds