Wall clock time and date at job start Tue Mar 31 2020 06:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47229 * 2 1 4 4 C 1.52998 * 109.47229 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.46839 * 304.99744 * 4 3 2 6 6 N 1.46494 * 109.47343 * 64.99883 * 4 3 2 7 7 C 1.34776 * 120.00009 * 204.99929 * 6 4 3 8 8 O 1.21609 * 120.00181 * 0.02562 * 7 6 4 9 9 C 1.47435 * 119.99851 * 180.02562 * 7 6 4 10 10 C 1.39235 * 120.28458 * 356.67675 * 9 7 6 11 11 C 1.38211 * 120.09301 * 180.27836 * 10 9 7 12 12 C 1.38829 * 120.67901 * 359.70331 * 11 10 9 13 13 C 1.37601 * 120.56863 * 359.97438 * 12 11 10 14 14 C 1.40712 * 119.88037 * 0.02742 * 13 12 11 15 15 C 1.40885 * 120.32562 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99856 * 145.79790 * 15 14 13 17 17 C 1.40272 * 120.00496 * 325.79403 * 15 14 13 18 18 N 1.30635 * 119.99551 * 340.74470 * 17 15 14 19 19 Si 1.86798 * 120.00264 * 160.74014 * 17 15 14 20 20 H 1.48499 * 109.47225 * 180.02562 * 19 17 15 21 21 H 1.48495 * 109.47108 * 300.00180 * 19 17 15 22 22 H 1.48501 * 109.46970 * 60.00492 * 19 17 15 23 23 C 1.50703 * 109.47392 * 185.00200 * 4 3 2 24 24 O 1.20821 * 119.99766 * 240.00306 * 23 4 3 25 25 O 1.34226 * 119.99800 * 59.99413 * 23 4 3 26 26 H 1.09001 * 109.46998 * 60.00401 * 1 2 3 27 27 H 1.08997 * 109.47465 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47381 * 299.99865 * 1 2 3 29 29 H 1.09006 * 109.47252 * 239.99742 * 2 1 3 30 30 H 1.09002 * 109.47081 * 120.00382 * 2 1 3 31 31 H 1.09006 * 109.47214 * 59.99719 * 3 2 1 32 32 H 1.09002 * 109.47400 * 300.00186 * 3 2 1 33 33 H 0.96994 * 119.99831 * 25.00001 * 6 4 3 34 34 H 1.08001 * 119.94814 * 0.02562 * 10 9 7 35 35 H 1.08002 * 119.66230 * 179.71940 * 11 10 9 36 36 H 1.08002 * 119.72114 * 180.02562 * 12 11 10 37 37 H 1.08002 * 120.06038 * 180.02562 * 13 12 11 38 38 H 0.96991 * 119.99936 * 354.83202 * 18 17 15 39 39 H 0.96705 * 117.00092 * 180.02562 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9329 0.8531 0.8428 6 7 4.0589 0.8585 -1.2508 7 6 5.2809 0.2920 -1.2979 8 8 5.9775 0.2651 -0.3015 9 6 5.7731 -0.2951 -2.5575 10 6 4.9544 -0.3295 -3.6833 11 6 5.4179 -0.8861 -4.8604 12 6 6.7010 -1.4103 -4.9391 13 6 7.5356 -1.3848 -3.8454 14 6 7.0881 -0.8239 -2.6350 15 6 7.9347 -0.7933 -1.5093 16 1 7.8849 0.0355 -0.8185 17 6 8.8421 -1.8393 -1.2854 18 7 8.6644 -2.9943 -1.8692 19 14 10.3048 -1.5805 -0.1527 20 1 11.1056 -2.8292 -0.0852 21 1 11.1499 -0.4789 -0.6793 22 1 9.8218 -1.2276 1.2066 23 6 4.0723 2.8579 0.1245 24 8 4.7673 3.3303 -0.7436 25 8 3.7475 3.5936 1.1992 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.5031 0.8796 -2.0454 34 1 3.9544 0.0756 -3.6353 35 1 4.7753 -0.9132 -5.7281 36 1 7.0474 -1.8412 -5.8669 37 1 8.5324 -1.7946 -3.9159 38 1 7.8663 -3.1532 -2.3971 39 1 4.0930 4.4962 1.2340 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595998220.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:41 Heat of formation + Delta-G solvation = -148.365130 kcal Electronic energy + Delta-G solvation = -23398.624500 eV Core-core repulsion = 19883.201850 eV Total energy + Delta-G solvation = -3515.422650 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.74825 -40.55129 -38.88798 -37.25253 -37.07136 -35.86664 -34.32984 -32.12138 -31.32817 -30.16657 -27.14565 -26.11003 -24.45743 -22.94264 -22.42829 -21.92752 -21.34073 -19.95580 -19.17273 -18.31406 -17.81629 -17.18475 -16.64127 -16.50727 -16.06645 -15.84226 -15.55378 -15.47354 -15.26630 -14.54141 -14.38118 -14.29713 -13.97605 -13.74565 -13.41021 -12.96867 -12.80094 -12.70889 -12.64965 -12.51827 -12.36001 -12.07795 -12.04030 -11.95322 -11.62110 -11.56818 -11.47381 -10.97891 -10.44093 -10.24905 -9.64025 -9.50740 -9.13106 -6.48024 0.36794 0.89804 1.11492 1.44712 1.60051 1.74572 1.75266 2.24387 2.29379 2.45627 2.73726 3.54654 3.57620 3.88999 4.04361 4.17953 4.23001 4.32115 4.41208 4.45850 4.61076 4.72787 4.81223 4.85089 4.87395 4.99414 5.12175 5.26798 5.29151 5.40139 5.41199 5.48483 5.54131 5.63686 5.69138 5.86903 5.94405 6.17245 6.32185 6.59550 6.81514 6.88000 6.91661 7.50217 8.03025 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.014147 B = 0.005374 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.755805 B = 5209.402782 C = 6065.642706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C -0.105 4.105 4 C 0.157 3.843 5 H 0.110 0.890 6 N -0.707 5.707 7 C 0.567 3.433 8 O -0.575 6.575 9 C -0.284 4.284 10 C -0.041 4.041 11 C -0.243 4.243 12 C -0.071 4.071 13 C -0.225 4.225 14 C 0.096 3.904 15 C -0.511 4.511 16 H 0.076 0.924 17 C -0.001 4.001 18 N -0.814 5.814 19 Si 1.114 2.886 20 H -0.261 1.261 21 H -0.262 1.262 22 H -0.272 1.272 23 C 0.467 3.533 24 O -0.547 6.547 25 O -0.504 6.504 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.111 0.889 32 H 0.088 0.912 33 H 0.411 0.589 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.126 0.874 37 H 0.090 0.910 38 H 0.283 0.717 39 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.008 7.083 2.714 16.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C -0.143 4.143 4 C 0.049 3.951 5 H 0.128 0.872 6 N -0.362 5.362 7 C 0.361 3.639 8 O -0.456 6.456 9 C -0.289 4.289 10 C -0.059 4.059 11 C -0.262 4.262 12 C -0.090 4.090 13 C -0.244 4.244 14 C 0.092 3.908 15 C -0.538 4.538 16 H 0.094 0.906 17 C -0.216 4.216 18 N -0.438 5.438 19 Si 0.932 3.068 20 H -0.185 1.185 21 H -0.187 1.187 22 H -0.197 1.197 23 C 0.308 3.692 24 O -0.436 6.436 25 O -0.316 6.316 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.129 0.871 32 H 0.106 0.894 33 H 0.249 0.751 34 H 0.153 0.847 35 H 0.156 0.844 36 H 0.144 0.856 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -13.149 6.019 3.750 14.939 hybrid contribution -0.908 1.305 -1.035 1.897 sum -14.057 7.324 2.715 16.081 Atomic orbital electron populations 1.21722 0.93652 1.02258 1.02708 1.21531 0.97390 0.95023 1.02372 1.21865 0.87161 0.99579 1.05683 1.20585 0.97903 0.86538 0.90049 0.87187 1.45537 1.17960 1.59595 1.13108 1.18432 0.80485 0.76616 0.88388 1.90658 1.56837 1.60053 1.38032 1.19747 0.96128 1.18413 0.94568 1.21153 0.97878 0.95069 0.91846 1.20818 0.97299 1.09296 0.98763 1.21172 0.94318 0.96341 0.97120 1.21208 0.99590 1.09923 0.93723 1.17896 0.90554 0.89161 0.93173 1.21062 1.16260 1.08074 1.08446 0.90567 1.28423 1.03224 0.91347 0.98632 1.70495 1.27541 1.22950 1.22851 0.83040 0.71898 0.77612 0.74281 1.18512 1.18713 1.19676 1.24500 0.76420 0.89776 0.78488 1.90729 1.36829 1.73258 1.42818 1.84469 1.71744 1.31960 1.43451 0.91854 0.92466 0.91596 0.92456 0.92190 0.87115 0.89363 0.75111 0.84737 0.84408 0.85633 0.89205 0.90434 0.71323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 71.98 0.71 -1.23 16 2 C -0.13 -2.26 5.82 30.59 0.18 -2.09 16 3 C -0.11 -1.89 4.72 30.59 0.14 -1.74 16 4 C 0.16 4.49 2.48 44.25 0.11 4.60 16 5 H 0.11 3.51 7.58 -2.38 -0.02 3.50 16 6 N -0.71 -24.37 4.01 -449.36 -1.80 -26.18 16 7 C 0.57 26.93 7.56 86.67 0.66 27.59 16 8 O -0.57 -31.96 13.22 -4.06 -0.05 -32.02 16 9 C -0.28 -14.07 5.92 -19.70 -0.12 -14.18 16 10 C -0.04 -1.63 9.53 22.50 0.21 -1.42 16 11 C -0.24 -9.30 10.03 22.40 0.22 -9.07 16 12 C -0.07 -3.02 10.01 22.26 0.22 -2.80 16 13 C -0.23 -11.58 7.87 22.72 0.18 -11.41 16 14 C 0.10 5.38 5.17 -21.11 -0.11 5.27 16 15 C -0.51 -30.24 7.65 23.41 0.18 -30.06 16 16 H 0.08 4.83 5.93 -2.91 -0.02 4.81 16 17 C 0.00 -0.04 5.04 85.37 0.43 0.39 16 18 N -0.81 -45.89 12.57 21.88 0.28 -45.62 16 19 Si 1.11 48.10 29.98 68.60 2.06 50.16 16 20 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 21 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 23 C 0.47 14.31 7.66 71.24 0.55 14.85 16 24 O -0.55 -21.72 17.08 21.98 0.38 -21.35 16 25 O -0.50 -10.84 13.23 -51.38 -0.68 -11.52 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 1.18 7.75 -2.38 -0.02 1.17 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.11 1.57 7.99 -2.38 -0.02 1.56 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.41 11.68 6.64 -92.71 -0.62 11.06 16 34 H 0.13 4.09 6.41 -2.91 -0.02 4.08 16 35 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 36 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 37 H 0.09 4.83 6.94 -2.91 -0.02 4.81 16 38 H 0.28 16.40 6.55 -92.71 -0.61 15.79 16 39 H 0.43 5.67 9.10 -74.05 -0.67 5.00 16 Total: -1.00 -77.12 332.51 3.71 -73.41 By element: Atomic # 1 Polarization: 34.44 SS G_CDS: -0.03 Total: 34.41 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: 3.57 Total: -21.30 kcal Atomic # 7 Polarization: -70.27 SS G_CDS: -1.53 Total: -71.79 kcal Atomic # 8 Polarization: -64.53 SS G_CDS: -0.36 Total: -64.89 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.06 Total: 50.16 kcal Total: -77.12 3.71 -73.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595998220.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.956 kcal (2) G-P(sol) polarization free energy of solvation -77.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds