Wall clock time and date at job start Tue Mar 31 2020 06:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38623 * 120.11523 * 2 1 4 4 N 1.39956 * 119.99948 * 359.72756 * 3 2 1 5 5 C 1.34776 * 119.99880 * 200.87057 * 4 3 2 6 6 O 1.21279 * 120.00296 * 5.98218 * 5 4 3 7 7 C 1.50704 * 119.99328 * 185.99220 * 5 4 3 8 8 C 1.53007 * 109.46693 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.46701 * 179.97438 * 8 7 5 10 10 C 1.50702 * 109.46655 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99972 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99766 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00289 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99923 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46891 * 60.00305 * 14 12 10 16 16 H 1.48502 * 109.46972 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47269 * 299.99949 * 14 12 10 18 18 C 1.38960 * 120.00647 * 179.70958 * 3 2 1 19 19 C 1.38266 * 120.23088 * 0.02562 * 18 3 2 20 20 C 1.37967 * 120.23232 * 359.97438 * 19 18 3 21 21 C 1.39513 * 120.10881 * 179.72939 * 2 1 3 22 22 C 1.47733 * 120.11873 * 0.24742 * 21 2 1 23 23 O 1.21473 * 120.00214 * 5.97032 * 22 21 2 24 24 O 1.34708 * 120.00404 * 185.97059 * 22 21 2 25 25 H 1.08998 * 109.47503 * 97.83749 * 1 2 3 26 26 H 1.09000 * 109.47320 * 217.84764 * 1 2 3 27 27 H 1.09001 * 109.46293 * 337.84182 * 1 2 3 28 28 H 0.97000 * 119.99643 * 20.86541 * 4 3 2 29 29 H 1.09006 * 109.47182 * 299.99370 * 7 5 4 30 30 H 1.08995 * 109.47447 * 59.99518 * 7 5 4 31 31 H 1.08989 * 109.46964 * 299.99762 * 8 7 5 32 32 H 1.09004 * 109.47080 * 59.99911 * 8 7 5 33 33 H 1.08993 * 109.47474 * 300.00337 * 9 8 7 34 34 H 1.09004 * 109.46993 * 60.00389 * 9 8 7 35 35 H 0.96995 * 120.00387 * 180.02562 * 13 12 10 36 36 H 1.07999 * 119.88517 * 180.02562 * 18 3 2 37 37 H 1.08003 * 119.88562 * 180.02562 * 19 18 3 38 38 H 1.07996 * 120.00469 * 180.02562 * 20 19 18 39 39 H 0.96696 * 117.00418 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1991 0.0000 4 7 1.5052 2.4126 -0.0058 5 6 2.1167 3.5392 -0.4218 6 8 3.2331 3.4849 -0.8925 7 6 1.4133 4.8666 -0.3017 8 6 2.3200 5.9748 -0.8410 9 6 1.6055 7.3224 -0.7197 10 6 2.4988 8.4140 -1.2502 11 1 3.4780 8.1709 -1.6358 12 6 2.0661 9.7230 -1.2435 13 7 0.8740 10.0192 -0.7736 14 14 3.1737 11.0763 -1.9004 15 1 3.4879 10.8097 -3.3271 16 1 2.4802 12.3842 -1.7829 17 1 4.4329 11.1107 -1.1142 18 6 3.5921 1.1965 0.0061 19 6 4.2860 0.0005 0.0116 20 6 3.6036 -1.1985 0.0117 21 6 2.2069 -1.2069 0.0057 22 6 1.4733 -2.4892 0.0062 23 8 0.2639 -2.4972 -0.1077 24 8 2.1454 -3.6497 0.1331 25 1 -0.3634 -0.1401 -1.0180 26 1 -0.3634 -0.8115 0.6305 27 1 -0.3632 0.9518 0.3876 28 1 0.5817 2.4426 0.2896 29 1 0.4882 4.8410 -0.8778 30 1 1.1837 5.0628 0.7456 31 1 3.2447 6.0003 -0.2646 32 1 2.5499 5.7788 -1.8883 33 1 0.6809 7.2966 -1.2962 34 1 1.3753 7.5186 0.3275 35 1 0.5694 10.9400 -0.7691 36 1 4.1320 2.1318 0.0065 37 1 5.3660 0.0050 0.0168 38 1 4.1492 -2.1305 0.0165 39 1 1.6223 -4.4629 0.1275 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600031972.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:57 Heat of formation + Delta-G solvation = -111.292261 kcal Electronic energy + Delta-G solvation = -21998.977256 eV Core-core repulsion = 18485.162206 eV Total energy + Delta-G solvation = -3513.815050 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.15781 -40.25935 -38.48406 -36.49652 -35.08170 -34.30936 -32.73433 -32.17054 -30.50728 -28.08802 -27.19515 -24.77276 -24.09594 -22.31098 -21.43443 -20.49901 -19.88441 -18.66766 -17.81086 -17.21668 -16.28052 -16.11940 -15.94896 -15.91900 -15.58436 -14.77525 -14.45466 -14.12112 -14.00037 -13.71178 -13.52588 -13.27575 -12.75854 -12.53672 -12.31940 -12.15247 -11.89436 -11.85241 -11.55841 -11.46107 -10.82427 -10.75021 -10.69702 -10.58393 -10.50457 -9.74398 -9.73033 -9.35100 -9.14312 -9.07019 -8.34893 -8.21320 -6.00537 -4.02371 0.44763 1.01207 2.22562 2.58236 2.68647 3.03613 3.34727 3.38468 3.41982 3.55278 4.46105 4.47714 4.54977 4.69812 4.80753 4.92345 5.15640 5.24589 5.35551 5.42371 5.47682 5.56958 5.57492 5.58231 5.83030 5.97937 6.03871 6.12038 6.17984 6.21928 6.28549 6.63112 6.73456 6.83609 7.08385 7.27894 7.56068 7.65897 7.78035 7.99212 8.11131 8.42567 9.04334 9.61819 11.10871 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.042123 B = 0.002492 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.555317 B =11233.974233 C =11794.578259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.057 4.057 3 C 0.145 3.855 4 N -0.676 5.676 5 C 0.514 3.486 6 O -0.514 6.514 7 C -0.138 4.138 8 C -0.096 4.096 9 C 0.021 3.979 10 C -0.520 4.520 11 H 0.056 0.944 12 C 0.056 3.944 13 N -0.897 5.897 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.277 1.277 18 C -0.098 4.098 19 C -0.117 4.117 20 C -0.083 4.083 21 C -0.117 4.117 22 C 0.529 3.471 23 O -0.510 6.510 24 O -0.513 6.513 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.057 0.943 28 H 0.412 0.588 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.016 0.984 34 H 0.016 0.984 35 H 0.261 0.739 36 H 0.162 0.838 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.628 -26.128 4.292 26.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.060 4.060 3 C 0.049 3.951 4 N -0.322 5.322 5 C 0.304 3.696 6 O -0.388 6.388 7 C -0.178 4.178 8 C -0.134 4.134 9 C -0.016 4.016 10 C -0.558 4.558 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.721 3.279 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.118 4.118 19 C -0.136 4.136 20 C -0.102 4.102 21 C -0.119 4.119 22 C 0.374 3.626 23 O -0.400 6.400 24 O -0.325 6.325 25 H 0.098 0.902 26 H 0.112 0.888 27 H 0.076 0.924 28 H 0.250 0.750 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.070 0.930 36 H 0.179 0.821 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 1.187 -25.536 3.963 25.869 hybrid contribution -0.301 0.220 -0.216 0.432 sum 0.885 -25.316 3.747 25.607 Atomic orbital electron populations 1.21002 0.89712 1.02714 1.03988 1.19625 0.96684 0.90162 0.99536 1.17530 0.91626 0.85003 1.00897 1.43916 1.16696 1.06188 1.65360 1.21571 0.86742 0.85749 0.75544 1.90600 1.19634 1.86459 1.42126 1.21915 1.01070 0.90668 1.04132 1.21480 0.97554 0.93991 1.00347 1.19126 0.95663 0.89659 0.97198 1.21213 1.01903 0.91861 1.40830 0.92610 1.25018 0.95155 0.98833 0.95471 1.69944 1.18136 1.19040 1.46558 0.86645 0.80730 0.81000 0.79570 1.20218 1.21321 1.20211 1.22006 0.92575 1.00826 0.96381 1.21095 1.00547 0.91408 1.00546 1.21366 0.92440 0.99096 0.97323 1.18522 0.93475 0.89114 1.10770 1.20868 0.85293 0.84238 0.72209 1.90856 1.15288 1.87661 1.46160 1.84561 1.45449 1.17143 1.85308 0.90199 0.88796 0.92433 0.75004 0.88844 0.88721 0.92517 0.92515 0.96541 0.96541 0.92963 0.82107 0.84758 0.84582 0.72822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 8.51 36.01 0.31 -0.83 16 2 C -0.06 -0.63 5.93 -104.00 -0.62 -1.25 16 3 C 0.15 1.77 6.46 -83.74 -0.54 1.23 16 4 N -0.68 -7.88 5.22 -9.89 -0.05 -7.94 16 5 C 0.51 7.58 7.66 -10.98 -0.08 7.49 16 6 O -0.51 -9.17 12.94 5.56 0.07 -9.10 16 7 C -0.14 -2.09 5.70 -27.88 -0.16 -2.25 16 8 C -0.10 -1.95 4.44 -26.73 -0.12 -2.07 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.52 -14.74 9.11 -34.44 -0.31 -15.06 16 11 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 14 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 C -0.10 -1.22 8.76 -39.30 -0.34 -1.56 16 19 C -0.12 -1.18 10.02 -39.67 -0.40 -1.58 16 20 C -0.08 -0.78 9.61 -39.15 -0.38 -1.16 16 21 C -0.12 -1.24 5.87 -105.01 -0.62 -1.85 16 22 C 0.53 5.17 8.20 34.61 0.28 5.46 16 23 O -0.51 -5.94 14.15 -19.25 -0.27 -6.21 16 24 O -0.51 -3.44 12.69 -40.51 -0.51 -3.95 16 25 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.09 0.96 5.94 -51.93 -0.31 0.65 16 27 H 0.06 0.44 6.09 -51.93 -0.32 0.13 16 28 H 0.41 3.61 6.70 -40.82 -0.27 3.34 16 29 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.06 1.19 8.10 -51.94 -0.42 0.77 16 32 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.16 2.28 5.50 -52.49 -0.29 1.99 16 37 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 38 H 0.14 1.00 7.62 -52.49 -0.40 0.60 16 39 H 0.41 0.90 9.11 45.56 0.42 1.32 16 LS Contribution 331.86 15.07 5.00 5.00 Total: -1.00 -34.18 331.86 -7.35 -41.54 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -4.09 Total: 1.46 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -3.21 Total: -11.54 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.68 Total: -33.94 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.71 Total: -19.26 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.18 -7.35 -41.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600031972.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.754 kcal (2) G-P(sol) polarization free energy of solvation -34.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds