Wall clock time and date at job start Tue Mar 31 2020 06:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37666 * 119.95760 * 2 1 4 4 C 1.39790 * 119.92092 * 179.97438 * 3 2 1 5 5 C 1.47462 * 120.08092 * 179.97438 * 4 3 2 6 6 O 1.21504 * 119.99666 * 0.02562 * 5 4 3 7 7 O 1.34753 * 119.99954 * 180.02562 * 5 4 3 8 8 C 1.39830 * 119.83976 * 0.02562 * 4 3 2 9 9 C 1.37622 * 119.92221 * 359.97438 * 8 4 3 10 10 C 1.39122 * 119.96091 * 179.97438 * 2 1 3 11 11 N 1.39413 * 119.92567 * 359.73143 * 10 2 1 12 12 C 1.34771 * 120.00266 * 145.43693 * 11 10 2 13 13 O 1.21275 * 120.00350 * 4.55235 * 12 11 10 14 14 C 1.50699 * 120.00118 * 184.54547 * 12 11 10 15 15 C 1.52996 * 109.47430 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47193 * 180.02562 * 15 14 12 17 17 C 1.50699 * 109.47122 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00151 * 0.02562 * 17 16 15 19 19 C 1.37886 * 120.00218 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99487 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99964 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47277 * 90.00257 * 21 19 17 23 23 H 1.48505 * 109.46946 * 209.99853 * 21 19 17 24 24 H 1.48497 * 109.47494 * 329.99779 * 21 19 17 25 25 H 1.08991 * 109.47531 * 270.02085 * 1 2 3 26 26 H 1.08996 * 109.47245 * 30.02704 * 1 2 3 27 27 H 1.09005 * 109.46883 * 150.02177 * 1 2 3 28 28 H 1.08000 * 120.04321 * 359.97438 * 3 2 1 29 29 H 0.96697 * 116.99556 * 179.97438 * 7 5 4 30 30 H 1.08009 * 120.03851 * 180.02562 * 8 4 3 31 31 H 1.07995 * 119.96366 * 180.02562 * 9 8 4 32 32 H 0.97001 * 119.99449 * 325.44261 * 11 10 2 33 33 H 1.09002 * 109.46947 * 300.00652 * 14 12 11 34 34 H 1.08996 * 109.47174 * 60.00090 * 14 12 11 35 35 H 1.09002 * 109.47055 * 299.99933 * 15 14 12 36 36 H 1.08996 * 109.47401 * 59.99576 * 15 14 12 37 37 H 1.09000 * 109.47317 * 299.99451 * 16 15 14 38 38 H 1.09004 * 109.47237 * 59.99778 * 16 15 14 39 39 H 0.97005 * 119.99457 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1927 0.0000 4 6 3.5924 1.1918 0.0005 5 6 4.3323 2.4674 0.0000 6 8 3.7269 3.5208 -0.0005 7 8 5.6798 2.4646 0.0000 8 6 4.2874 -0.0215 0.0005 9 6 3.5935 -1.2101 0.0005 10 6 2.2018 -1.2053 0.0005 11 7 1.5024 -2.4113 0.0067 12 6 1.9930 -3.4783 -0.6544 13 8 3.0815 -3.4148 -1.1853 14 6 1.1890 -4.7504 -0.7339 15 6 1.9678 -5.7969 -1.5334 16 6 1.1513 -7.0882 -1.6147 17 6 1.9181 -8.1187 -2.4027 18 1 2.8908 -7.8769 -2.8050 19 6 1.3784 -9.3706 -2.6093 20 7 0.1946 -9.6654 -2.1181 21 14 2.3293 -10.6481 -3.5855 22 1 3.1828 -11.4407 -2.6642 23 1 1.3762 -11.5521 -4.2781 24 1 3.1849 -9.9673 -4.5903 25 1 -0.3634 0.0004 1.0276 26 1 -0.3633 0.8897 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6545 2.1280 -0.0004 29 1 6.1205 3.3253 -0.0008 30 1 5.3674 -0.0260 0.0014 31 1 4.1296 -2.1476 0.0010 32 1 0.6625 -2.4823 0.4869 33 1 1.0035 -5.1264 0.2722 34 1 0.2383 -4.5492 -1.2275 35 1 2.1536 -5.4210 -2.5396 36 1 2.9184 -5.9980 -1.0395 37 1 0.9651 -7.4643 -0.6087 38 1 0.2009 -6.8866 -2.1089 39 1 -0.1852 -10.5461 -2.2637 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600116884.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:00 Heat of formation + Delta-G solvation = -122.700502 kcal Electronic energy + Delta-G solvation = -21789.909148 eV Core-core repulsion = 18275.599399 eV Total energy + Delta-G solvation = -3514.309748 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.03249 -40.25179 -38.57384 -36.35871 -35.08373 -34.32300 -32.97759 -32.17953 -30.50612 -28.04418 -27.26786 -25.09848 -23.61098 -22.51998 -21.34888 -20.53216 -19.95439 -18.35469 -17.86745 -17.28629 -16.98272 -16.17627 -15.94968 -15.80793 -15.06553 -14.57398 -14.48538 -14.20475 -14.09837 -13.70186 -13.61284 -13.32299 -12.87567 -12.40625 -12.34548 -12.24871 -11.89667 -11.85383 -11.56347 -11.48736 -10.93100 -10.85561 -10.71490 -10.58832 -10.55111 -9.85610 -9.75924 -9.37992 -9.11878 -9.06625 -8.41301 -8.36443 -6.02187 -4.03807 0.38173 1.09071 2.17406 2.65791 2.74214 2.92241 3.32053 3.38195 3.42751 3.51168 4.43067 4.45656 4.55593 4.77046 4.79887 4.88850 5.01516 5.20879 5.28266 5.34155 5.38319 5.53836 5.54755 5.61458 5.80626 5.91622 6.00645 6.05747 6.11901 6.16229 6.23322 6.60963 6.68176 6.81410 7.06438 7.20321 7.60846 7.64362 7.76062 7.97665 8.07649 8.41120 9.03106 9.60513 11.09257 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.032869 B = 0.002489 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.655414 B =11248.881515 C =11944.063593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.132 4.132 3 C -0.033 4.033 4 C -0.156 4.156 5 C 0.532 3.468 6 O -0.522 6.522 7 O -0.512 6.512 8 C -0.043 4.043 9 C -0.138 4.138 10 C 0.195 3.805 11 N -0.680 5.680 12 C 0.513 3.487 13 O -0.510 6.510 14 C -0.137 4.137 15 C -0.096 4.096 16 C 0.021 3.979 17 C -0.519 4.519 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.892 3.108 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.273 1.273 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.139 0.861 29 H 0.413 0.587 30 H 0.140 0.860 31 H 0.151 0.849 32 H 0.414 0.586 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.699 22.966 7.911 24.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.135 4.135 3 C -0.052 4.052 4 C -0.158 4.158 5 C 0.377 3.623 6 O -0.412 6.412 7 O -0.324 6.324 8 C -0.062 4.062 9 C -0.158 4.158 10 C 0.099 3.901 11 N -0.325 5.325 12 C 0.303 3.697 13 O -0.383 6.383 14 C -0.177 4.177 15 C -0.134 4.134 16 C -0.017 4.017 17 C -0.558 4.558 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.720 3.280 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.198 1.198 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.157 0.843 29 H 0.271 0.729 30 H 0.158 0.842 31 H 0.169 0.831 32 H 0.251 0.749 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.035 0.965 38 H 0.035 0.965 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.967 22.655 7.495 24.046 hybrid contribution 0.313 -0.181 -0.286 0.461 sum 3.279 22.474 7.209 23.829 Atomic orbital electron populations 1.20742 0.90064 1.03617 1.02673 1.19612 0.96661 0.91192 1.06050 1.20875 0.91889 0.97948 0.94492 1.18937 0.93205 0.90578 1.13049 1.20845 0.80292 0.89423 0.71717 1.90881 1.69608 1.33691 1.47019 1.84584 1.21141 1.40806 1.85862 1.21346 1.00646 0.90523 0.93708 1.21383 0.92541 0.99773 1.02108 1.17971 0.91545 0.85335 0.95274 1.43844 1.26268 1.09644 1.52779 1.21630 0.87070 0.84850 0.76181 1.90687 1.20822 1.82586 1.44242 1.21908 1.00061 0.91761 1.03975 1.21483 0.98671 0.94831 0.98435 1.19128 0.95071 0.90285 0.97167 1.21251 1.03757 0.97189 1.33562 0.92558 1.25021 0.95009 0.98504 0.95966 1.69959 1.16416 1.21491 1.45799 0.86586 0.79726 0.81409 0.80261 1.20649 1.21239 1.19828 0.90815 0.90782 0.91183 0.84289 0.72870 0.84191 0.83106 0.74934 0.88765 0.88772 0.92525 0.92509 0.96537 0.96540 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 9.46 36.01 0.34 -0.44 16 2 C -0.13 -1.28 5.89 -104.50 -0.62 -1.90 16 3 C -0.03 -0.34 9.23 -39.21 -0.36 -0.70 16 4 C -0.16 -1.68 5.88 -104.96 -0.62 -2.30 16 5 C 0.53 5.62 8.26 34.49 0.28 5.90 16 6 O -0.52 -6.72 17.12 -19.27 -0.33 -7.05 16 7 O -0.51 -3.95 12.67 -40.64 -0.51 -4.46 16 8 C -0.04 -0.47 9.60 -39.21 -0.38 -0.84 16 9 C -0.14 -1.68 8.68 -39.46 -0.34 -2.02 16 10 C 0.20 2.22 6.28 -83.74 -0.53 1.69 16 11 N -0.68 -7.23 4.72 -9.86 -0.05 -7.28 16 12 C 0.51 7.28 7.67 -10.99 -0.08 7.19 16 13 O -0.51 -9.04 13.37 5.56 0.07 -8.97 16 14 C -0.14 -2.01 5.70 -27.89 -0.16 -2.17 16 15 C -0.10 -1.93 4.44 -26.73 -0.12 -2.05 16 16 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 17 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 20 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 21 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 27 H 0.07 0.47 7.17 -51.93 -0.37 0.09 16 28 H 0.14 1.27 7.64 -52.49 -0.40 0.87 16 29 H 0.41 1.28 9.11 45.56 0.42 1.69 16 30 H 0.14 1.29 7.60 -52.48 -0.40 0.89 16 31 H 0.15 2.05 6.17 -52.49 -0.32 1.73 16 32 H 0.41 3.04 7.83 -40.82 -0.32 2.72 16 33 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 36 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 339.23 15.07 5.11 5.11 Total: -1.00 -34.79 339.23 -7.43 -42.22 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -4.32 Total: 0.33 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -3.13 Total: -10.72 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 0.69 Total: -33.10 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.77 Total: -20.48 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.79 -7.43 -42.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600116884.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.478 kcal (2) G-P(sol) polarization free energy of solvation -34.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds