Wall clock time and date at job start Tue Mar 31 2020 06:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37666 * 119.95760 * 2 1 4 4 C 1.39790 * 119.92092 * 179.97438 * 3 2 1 5 5 C 1.47462 * 120.08092 * 179.97438 * 4 3 2 6 6 O 1.21504 * 119.99666 * 0.02562 * 5 4 3 7 7 O 1.34753 * 119.99954 * 180.02562 * 5 4 3 8 8 C 1.39830 * 119.83976 * 0.02562 * 4 3 2 9 9 C 1.37622 * 119.92221 * 359.97438 * 8 4 3 10 10 C 1.39122 * 119.96091 * 179.97438 * 2 1 3 11 11 N 1.39413 * 119.92567 * 359.73143 * 10 2 1 12 12 C 1.34771 * 120.00266 * 145.43693 * 11 10 2 13 13 O 1.21275 * 120.00350 * 4.55235 * 12 11 10 14 14 C 1.50699 * 120.00118 * 184.54547 * 12 11 10 15 15 C 1.52996 * 109.47430 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47193 * 180.02562 * 15 14 12 17 17 C 1.50699 * 109.47122 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00151 * 0.02562 * 17 16 15 19 19 C 1.37886 * 120.00218 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99487 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99964 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47277 * 90.00257 * 21 19 17 23 23 H 1.48505 * 109.46946 * 209.99853 * 21 19 17 24 24 H 1.48497 * 109.47494 * 329.99779 * 21 19 17 25 25 H 1.08991 * 109.47531 * 270.02085 * 1 2 3 26 26 H 1.08996 * 109.47245 * 30.02704 * 1 2 3 27 27 H 1.09005 * 109.46883 * 150.02177 * 1 2 3 28 28 H 1.08000 * 120.04321 * 359.97438 * 3 2 1 29 29 H 0.96697 * 116.99556 * 179.97438 * 7 5 4 30 30 H 1.08009 * 120.03851 * 180.02562 * 8 4 3 31 31 H 1.07995 * 119.96366 * 180.02562 * 9 8 4 32 32 H 0.97001 * 119.99449 * 325.44261 * 11 10 2 33 33 H 1.09002 * 109.46947 * 300.00652 * 14 12 11 34 34 H 1.08996 * 109.47174 * 60.00090 * 14 12 11 35 35 H 1.09002 * 109.47055 * 299.99933 * 15 14 12 36 36 H 1.08996 * 109.47401 * 59.99576 * 15 14 12 37 37 H 1.09000 * 109.47317 * 299.99451 * 16 15 14 38 38 H 1.09004 * 109.47237 * 59.99778 * 16 15 14 39 39 H 0.97005 * 119.99457 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1927 0.0000 4 6 3.5924 1.1918 0.0005 5 6 4.3323 2.4674 0.0000 6 8 3.7269 3.5208 -0.0005 7 8 5.6798 2.4646 0.0000 8 6 4.2874 -0.0215 0.0005 9 6 3.5935 -1.2101 0.0005 10 6 2.2018 -1.2053 0.0005 11 7 1.5024 -2.4113 0.0067 12 6 1.9930 -3.4783 -0.6544 13 8 3.0815 -3.4148 -1.1853 14 6 1.1890 -4.7504 -0.7339 15 6 1.9678 -5.7969 -1.5334 16 6 1.1513 -7.0882 -1.6147 17 6 1.9181 -8.1187 -2.4027 18 1 2.8908 -7.8769 -2.8050 19 6 1.3784 -9.3706 -2.6093 20 7 0.1946 -9.6654 -2.1181 21 14 2.3293 -10.6481 -3.5855 22 1 3.1828 -11.4407 -2.6642 23 1 1.3762 -11.5521 -4.2781 24 1 3.1849 -9.9673 -4.5903 25 1 -0.3634 0.0004 1.0276 26 1 -0.3633 0.8897 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6545 2.1280 -0.0004 29 1 6.1205 3.3253 -0.0008 30 1 5.3674 -0.0260 0.0014 31 1 4.1296 -2.1476 0.0010 32 1 0.6625 -2.4823 0.4869 33 1 1.0035 -5.1264 0.2722 34 1 0.2383 -4.5492 -1.2275 35 1 2.1536 -5.4210 -2.5396 36 1 2.9184 -5.9980 -1.0395 37 1 0.9651 -7.4643 -0.6087 38 1 0.2009 -6.8866 -2.1089 39 1 -0.1852 -10.5461 -2.2637 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600116884.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:59 Heat of formation + Delta-G solvation = -145.313115 kcal Electronic energy + Delta-G solvation = -21790.889704 eV Core-core repulsion = 18275.599399 eV Total energy + Delta-G solvation = -3515.290305 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.94666 -41.14022 -39.52446 -37.11671 -36.24377 -35.94320 -34.06000 -33.73551 -31.53525 -29.63415 -27.98154 -26.42135 -25.05122 -23.41250 -22.49289 -21.70275 -21.22538 -19.22652 -18.76373 -18.44054 -18.04986 -17.91581 -16.98755 -16.66437 -16.49618 -16.02658 -15.54818 -15.24904 -15.05133 -14.64462 -14.58331 -14.29746 -14.25666 -13.78050 -13.58413 -13.19267 -13.03824 -12.85673 -12.64287 -12.60153 -12.52711 -12.41501 -12.37172 -11.79576 -11.57335 -11.49584 -11.42721 -11.24710 -10.81160 -10.53155 -9.89719 -9.28638 -8.19778 -6.29012 -0.47019 0.28253 1.26105 1.40561 1.40905 1.52376 1.64673 1.94458 2.08197 2.42195 2.68430 3.13708 3.63952 3.77420 3.77936 4.04889 4.12899 4.18680 4.25653 4.28550 4.40066 4.71189 4.79716 4.82263 4.89939 4.97381 5.06158 5.11302 5.17436 5.20878 5.24225 5.28619 5.37292 5.54848 5.55743 5.77399 5.82171 5.88741 6.27345 6.33197 6.86876 6.94985 7.04965 7.39605 8.91548 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.032869 B = 0.002489 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.655414 B =11248.881515 C =11944.063593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.122 4.122 3 C -0.038 4.038 4 C -0.163 4.163 5 C 0.538 3.462 6 O -0.548 6.548 7 O -0.506 6.506 8 C -0.044 4.044 9 C -0.154 4.154 10 C 0.178 3.822 11 N -0.660 5.660 12 C 0.519 3.481 13 O -0.552 6.552 14 C -0.128 4.128 15 C -0.084 4.084 16 C 0.025 3.975 17 C -0.547 4.547 18 H 0.051 0.949 19 C 0.003 3.997 20 N -0.928 5.928 21 Si 0.959 3.041 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.269 1.269 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.150 0.850 29 H 0.433 0.567 30 H 0.151 0.849 31 H 0.132 0.868 32 H 0.431 0.569 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.041 0.959 36 H 0.043 0.957 37 H 0.003 0.997 38 H 0.002 0.998 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.307 23.907 8.217 25.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.124 4.124 3 C -0.056 4.056 4 C -0.165 4.165 5 C 0.384 3.616 6 O -0.441 6.441 7 O -0.320 6.320 8 C -0.063 4.063 9 C -0.174 4.174 10 C 0.082 3.918 11 N -0.306 5.306 12 C 0.309 3.691 13 O -0.428 6.428 14 C -0.167 4.167 15 C -0.122 4.122 16 C -0.012 4.012 17 C -0.585 4.585 18 H 0.069 0.931 19 C -0.195 4.195 20 N -0.569 5.569 21 Si 0.784 3.216 22 H -0.198 1.198 23 H -0.204 1.204 24 H -0.193 1.193 25 H 0.112 0.888 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.168 0.832 29 H 0.295 0.705 30 H 0.168 0.832 31 H 0.150 0.850 32 H 0.272 0.728 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.021 0.979 38 H 0.021 0.979 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.570 23.630 7.830 25.026 hybrid contribution 0.470 -0.405 -0.355 0.715 sum 3.040 23.225 7.475 24.587 Atomic orbital electron populations 1.20856 0.87771 1.04361 1.04207 1.19861 0.98200 0.90146 1.04221 1.21096 0.91805 0.98589 0.94131 1.19123 0.93815 0.90701 1.12864 1.20772 0.80966 0.88830 0.71032 1.90872 1.70322 1.34425 1.48478 1.84544 1.19802 1.42566 1.85079 1.21402 1.01210 0.90129 0.93533 1.21336 0.93285 0.99496 1.03309 1.18091 0.91428 0.85906 0.96368 1.43494 1.26602 1.08620 1.51880 1.21387 0.86309 0.85348 0.76062 1.90686 1.22515 1.83309 1.46328 1.21717 0.99894 0.90625 1.04485 1.21180 0.98088 0.94363 0.98583 1.19021 0.94722 0.91885 0.95560 1.21701 1.04009 0.98552 1.34198 0.93083 1.25876 0.95974 1.00649 0.96960 1.70057 1.17753 1.22221 1.46830 0.85541 0.78495 0.78701 0.78895 1.19772 1.20437 1.19340 0.88775 0.89756 0.90758 0.83201 0.70474 0.83172 0.84999 0.72831 0.86493 0.86610 0.94005 0.93774 0.97871 0.97941 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 9.46 71.24 0.67 -0.56 16 2 C -0.12 -2.11 5.89 -19.79 -0.12 -2.23 16 3 C -0.04 -0.70 9.23 22.51 0.21 -0.49 16 4 C -0.16 -3.34 5.88 -20.09 -0.12 -3.46 16 5 C 0.54 10.71 8.26 70.25 0.58 11.29 16 6 O -0.55 -13.52 17.12 19.82 0.34 -13.18 16 7 O -0.51 -6.99 12.67 -56.64 -0.72 -7.71 16 8 C -0.04 -0.93 9.60 22.51 0.22 -0.71 16 9 C -0.15 -3.75 8.68 22.35 0.19 -3.56 16 10 C 0.18 3.84 6.28 38.37 0.24 4.08 16 11 N -0.66 -12.95 4.72 -303.50 -1.43 -14.38 16 12 C 0.52 14.31 7.67 87.66 0.67 14.99 16 13 O -0.55 -19.82 13.37 -3.02 -0.04 -19.86 16 14 C -0.13 -3.58 5.70 29.85 0.17 -3.41 16 15 C -0.08 -3.42 4.44 30.59 0.14 -3.28 16 16 C 0.03 1.27 4.97 29.85 0.15 1.42 16 17 C -0.55 -31.28 9.11 25.60 0.23 -31.05 16 18 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 19 C 0.00 0.20 5.46 84.66 0.46 0.66 16 20 N -0.93 -55.26 13.29 21.45 0.28 -54.97 16 21 Si 0.96 44.44 29.54 68.60 2.03 46.47 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 25 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.08 0.77 8.08 -2.39 -0.02 0.75 16 27 H 0.07 0.76 7.17 -2.38 -0.02 0.74 16 28 H 0.15 2.45 7.64 -2.91 -0.02 2.42 16 29 H 0.43 1.88 9.11 -74.06 -0.67 1.20 16 30 H 0.15 2.71 7.60 -2.91 -0.02 2.69 16 31 H 0.13 3.73 6.17 -2.91 -0.02 3.72 16 32 H 0.43 5.20 7.83 -92.71 -0.73 4.47 16 33 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 35 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 36 H 0.04 1.88 8.10 -2.39 -0.02 1.86 16 37 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 38 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 39 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 Total: -1.00 -75.68 339.23 3.85 -71.83 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -0.31 Total: 8.13 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: 3.70 Total: -16.32 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: -1.15 Total: -69.35 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -0.42 Total: -40.76 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -75.68 3.85 -71.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600116884.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.486 kcal (2) G-P(sol) polarization free energy of solvation -75.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds