Wall clock time and date at job start Tue Mar 31 2020 06:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38267 * 119.88409 * 2 1 4 4 C 1.37965 * 120.22793 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.00537 * 180.02562 * 4 3 2 6 6 C 1.39671 * 119.99201 * 0.02562 * 4 3 2 7 7 C 1.47737 * 120.11771 * 179.97438 * 6 4 3 8 8 O 1.21476 * 119.99742 * 356.85416 * 7 6 4 9 9 O 1.34711 * 120.00194 * 176.84927 * 7 6 4 10 10 C 1.39516 * 119.76573 * 359.73156 * 6 4 3 11 11 C 1.38626 * 119.77290 * 0.53873 * 10 6 4 12 12 N 1.39949 * 119.99475 * 179.73316 * 11 10 6 13 13 C 1.34775 * 120.00484 * 33.73979 * 12 11 10 14 14 O 1.21294 * 119.99603 * 355.03828 * 13 12 11 15 15 C 1.50703 * 120.00361 * 174.76690 * 13 12 11 16 16 H 1.08996 * 109.46930 * 59.99935 * 15 13 12 17 17 C 1.52995 * 109.46881 * 299.99979 * 15 13 12 18 18 C 1.50701 * 109.46881 * 179.97438 * 15 13 12 19 19 H 1.07991 * 120.00329 * 359.97438 * 18 15 13 20 20 C 1.37883 * 119.99498 * 179.97438 * 18 15 13 21 21 N 1.31504 * 120.00159 * 0.02562 * 20 18 15 22 22 Si 1.86799 * 119.99733 * 179.97438 * 20 18 15 23 23 H 1.48497 * 109.47258 * 89.99955 * 22 20 18 24 24 H 1.48498 * 109.47136 * 210.00268 * 22 20 18 25 25 H 1.48506 * 109.47357 * 330.00183 * 22 20 18 26 26 H 1.09006 * 109.46774 * 270.02209 * 1 2 3 27 27 H 1.09002 * 109.47265 * 30.01520 * 1 2 3 28 28 H 1.08990 * 109.47532 * 150.01988 * 1 2 3 29 29 H 1.07999 * 119.88587 * 359.96404 * 3 2 1 30 30 H 1.09005 * 109.47134 * 97.55379 * 5 4 3 31 31 H 1.09001 * 109.46938 * 217.55457 * 5 4 3 32 32 H 1.09004 * 109.46952 * 337.55649 * 5 4 3 33 33 H 0.96701 * 117.00346 * 180.02562 * 9 7 6 34 34 H 1.07999 * 120.10954 * 180.29215 * 10 6 4 35 35 H 0.97003 * 119.99710 * 213.73060 * 12 11 10 36 36 H 1.09000 * 109.46832 * 180.02562 * 17 15 13 37 37 H 1.09005 * 109.47387 * 299.99541 * 17 15 13 38 38 H 1.08997 * 109.47662 * 59.99689 * 17 15 13 39 39 H 0.97007 * 120.00014 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1988 0.0000 4 6 3.5755 1.2071 0.0005 5 6 4.3213 2.5166 0.0011 6 6 4.2809 0.0016 0.0005 7 6 5.7583 0.0073 0.0005 8 8 6.3616 1.0600 -0.0572 9 8 6.4363 -1.1550 0.0647 10 6 3.5855 -1.2078 0.0057 11 6 2.1993 -1.2049 -0.0006 12 7 1.4970 -2.4154 -0.0011 13 6 1.9954 -3.4840 0.6517 14 8 3.0935 -3.4241 1.1633 15 6 1.1858 -4.7512 0.7513 16 1 0.9766 -5.1282 -0.2497 17 6 -0.1317 -4.4592 1.4720 18 6 1.9637 -5.7847 1.5245 19 1 2.9461 -5.5479 1.9052 20 6 1.4210 -7.0328 1.7457 21 7 0.2249 -7.3214 1.2816 22 14 2.3855 -8.3142 2.7034 23 1 2.0688 -8.1936 4.1492 24 1 2.0149 -9.6709 2.2269 25 1 3.8398 -8.0967 2.4955 26 1 -0.3633 0.0004 1.0277 27 1 -0.3634 0.8899 -0.5141 28 1 -0.3634 -0.8901 -0.5135 29 1 1.6521 2.1319 -0.0006 30 1 4.6181 2.7653 1.0201 31 1 5.2093 2.4293 -0.6250 32 1 3.6758 3.3025 -0.3913 33 1 7.4018 -1.1008 0.0623 34 1 4.1254 -2.1432 0.0105 35 1 0.6514 -2.4853 -0.4713 36 1 -0.7171 -5.3759 1.5445 37 1 0.0775 -4.0822 2.4732 38 1 -0.6942 -3.7118 0.9126 39 1 -0.1567 -8.1996 1.4369 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600154146.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:19 Heat of formation + Delta-G solvation = -108.510391 kcal Electronic energy + Delta-G solvation = -23136.729710 eV Core-core repulsion = 19623.035291 eV Total energy + Delta-G solvation = -3513.694419 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.74042 -39.74190 -38.19846 -36.16678 -34.69938 -33.89701 -32.70941 -31.54375 -30.26636 -27.77334 -26.57237 -25.22157 -23.53996 -22.73798 -22.15238 -20.21947 -19.51956 -18.29532 -17.58733 -16.36528 -16.14419 -15.66328 -15.41654 -15.15664 -14.90255 -14.63692 -14.12493 -13.80682 -13.59050 -13.22393 -13.11197 -13.06904 -12.70614 -12.51646 -12.11226 -11.83359 -11.73349 -11.59354 -11.48204 -11.35474 -11.06871 -10.79306 -10.72195 -10.38913 -10.08462 -10.03463 -9.87639 -9.06934 -8.89291 -8.68345 -8.40850 -7.77122 -6.10242 -4.13917 0.71264 1.41656 2.53500 3.08338 3.30466 3.36510 3.40984 3.43649 3.60440 3.87766 4.41996 4.67073 4.84488 4.92728 5.17063 5.23608 5.25674 5.34366 5.53154 5.54636 5.74261 5.77089 5.85560 5.93750 6.02696 6.10860 6.25831 6.43464 6.48550 6.52223 6.60139 6.70800 6.72177 6.82242 7.17254 7.35589 7.65051 7.84650 7.95173 8.00359 8.25592 8.93492 8.97492 9.52083 10.97363 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.019760 B = 0.004366 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.675771 B = 6412.295493 C = 7670.453500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.079 4.079 3 C -0.120 4.120 4 C -0.042 4.042 5 C -0.123 4.123 6 C -0.127 4.127 7 C 0.532 3.468 8 O -0.519 6.519 9 O -0.504 6.504 10 C -0.060 4.060 11 C 0.141 3.859 12 N -0.686 5.686 13 C 0.518 3.482 14 O -0.520 6.520 15 C 0.032 3.968 16 H 0.056 0.944 17 C -0.133 4.133 18 C -0.504 4.504 19 H 0.075 0.925 20 C 0.060 3.940 21 N -0.896 5.896 22 Si 0.901 3.099 23 H -0.280 1.280 24 H -0.287 1.287 25 H -0.272 1.272 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.132 0.868 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.411 0.589 34 H 0.160 0.840 35 H 0.407 0.593 36 H 0.096 0.904 37 H 0.032 0.968 38 H 0.012 0.988 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.507 15.845 -4.922 16.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.082 4.082 3 C -0.138 4.138 4 C -0.043 4.043 5 C -0.179 4.179 6 C -0.129 4.129 7 C 0.378 3.622 8 O -0.410 6.410 9 O -0.315 6.315 10 C -0.081 4.081 11 C 0.045 3.955 12 N -0.332 5.332 13 C 0.309 3.691 14 O -0.394 6.394 15 C 0.011 3.989 16 H 0.074 0.926 17 C -0.191 4.191 18 C -0.542 4.542 19 H 0.094 0.906 20 C -0.141 4.141 21 N -0.535 5.535 22 Si 0.729 3.271 23 H -0.206 1.206 24 H -0.213 1.213 25 H -0.197 1.197 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.150 0.850 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.077 0.923 33 H 0.269 0.731 34 H 0.178 0.822 35 H 0.244 0.756 36 H 0.114 0.886 37 H 0.051 0.949 38 H 0.031 0.969 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.878 15.865 -4.534 16.607 hybrid contribution 0.567 -0.762 0.342 1.010 sum 2.445 15.103 -4.192 15.864 Atomic orbital electron populations 1.20770 0.90531 1.02807 1.02996 1.20003 0.96473 0.91831 0.99930 1.20607 0.92650 0.97208 1.03365 1.19863 0.93481 0.94209 0.96731 1.21132 1.00977 0.92406 1.03419 1.18720 0.88806 0.94089 1.11236 1.20919 0.88857 0.80803 0.71580 1.90780 1.70694 1.32173 1.47374 1.84680 1.26315 1.35251 1.85243 1.21766 0.93051 0.98754 0.94505 1.17633 0.91082 0.86058 1.00718 1.44127 1.25488 1.09359 1.54262 1.22359 0.87217 0.84830 0.74693 1.90543 1.20995 1.82484 1.45375 1.18910 0.93020 0.87719 0.99249 0.92605 1.21764 0.97694 1.01589 0.98090 1.21112 1.03191 0.95747 1.34157 0.90641 1.24937 0.95080 0.98302 0.95789 1.69857 1.15626 1.21896 1.46100 0.86431 0.80497 0.80214 0.79972 1.20636 1.21254 1.19678 0.90438 0.91073 0.91422 0.85045 0.91136 0.88534 0.92317 0.73128 0.82238 0.75561 0.88586 0.94854 0.96852 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 9.76 36.00 0.35 -0.78 16 2 C -0.08 -1.03 5.90 -104.35 -0.62 -1.65 16 3 C -0.12 -1.43 9.30 -39.67 -0.37 -1.80 16 4 C -0.04 -0.56 5.92 -104.19 -0.62 -1.17 16 5 C -0.12 -1.42 8.85 36.01 0.32 -1.10 16 6 C -0.13 -1.96 5.87 -105.00 -0.62 -2.57 16 7 C 0.53 7.88 8.24 34.61 0.29 8.17 16 8 O -0.52 -7.92 14.01 -19.25 -0.27 -8.19 16 9 O -0.50 -6.66 12.68 -40.52 -0.51 -7.18 16 10 C -0.06 -1.04 8.28 -38.96 -0.32 -1.36 16 11 C 0.14 2.27 6.30 -83.74 -0.53 1.74 16 12 N -0.69 -11.57 4.89 -9.89 -0.05 -11.62 16 13 C 0.52 11.21 7.00 -10.99 -0.08 11.13 16 14 O -0.52 -12.80 12.80 5.55 0.07 -12.73 16 15 C 0.03 0.76 2.63 -92.92 -0.24 0.51 16 16 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 17 C -0.13 -2.90 8.87 37.16 0.33 -2.57 16 18 C -0.50 -13.78 8.38 -34.44 -0.29 -14.07 16 19 H 0.08 2.18 6.75 -52.49 -0.35 1.83 16 20 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 21 N -0.90 -24.36 11.32 55.43 0.63 -23.74 16 22 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 28 H 0.07 0.64 6.48 -51.93 -0.34 0.30 16 29 H 0.13 1.18 8.05 -52.49 -0.42 0.76 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.10 1.23 5.64 -51.93 -0.29 0.94 16 32 H 0.06 0.53 8.03 -51.93 -0.42 0.12 16 33 H 0.41 3.22 9.11 45.56 0.42 3.64 16 34 H 0.16 3.14 5.66 -52.49 -0.30 2.84 16 35 H 0.41 5.71 6.75 -40.82 -0.28 5.43 16 36 H 0.10 2.32 6.07 -51.93 -0.32 2.01 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.01 0.23 7.69 -51.93 -0.40 -0.17 16 39 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 326.34 15.07 4.92 4.92 Total: -1.00 -31.86 326.34 -6.66 -38.52 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -3.94 Total: 7.70 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -2.49 Total: -4.01 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.58 Total: -35.35 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.71 Total: -28.10 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.86 -6.66 -38.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600154146.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.986 kcal (2) G-P(sol) polarization free energy of solvation -31.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds