Wall clock time and date at job start Tue Mar 31 2020 06:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38267 * 119.88409 * 2 1 4 4 C 1.37965 * 120.22793 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.00537 * 180.02562 * 4 3 2 6 6 C 1.39671 * 119.99201 * 0.02562 * 4 3 2 7 7 C 1.47737 * 120.11771 * 179.97438 * 6 4 3 8 8 O 1.21476 * 119.99742 * 356.85416 * 7 6 4 9 9 O 1.34711 * 120.00194 * 176.84927 * 7 6 4 10 10 C 1.39516 * 119.76573 * 359.73156 * 6 4 3 11 11 C 1.38626 * 119.77290 * 0.53873 * 10 6 4 12 12 N 1.39949 * 119.99475 * 179.73316 * 11 10 6 13 13 C 1.34775 * 120.00484 * 33.73979 * 12 11 10 14 14 O 1.21294 * 119.99603 * 355.03828 * 13 12 11 15 15 C 1.50703 * 120.00361 * 174.76690 * 13 12 11 16 16 H 1.08996 * 109.46930 * 59.99935 * 15 13 12 17 17 C 1.52995 * 109.46881 * 299.99979 * 15 13 12 18 18 C 1.50701 * 109.46881 * 179.97438 * 15 13 12 19 19 H 1.07991 * 120.00329 * 359.97438 * 18 15 13 20 20 C 1.37883 * 119.99498 * 179.97438 * 18 15 13 21 21 N 1.31504 * 120.00159 * 0.02562 * 20 18 15 22 22 Si 1.86799 * 119.99733 * 179.97438 * 20 18 15 23 23 H 1.48497 * 109.47258 * 89.99955 * 22 20 18 24 24 H 1.48498 * 109.47136 * 210.00268 * 22 20 18 25 25 H 1.48506 * 109.47357 * 330.00183 * 22 20 18 26 26 H 1.09006 * 109.46774 * 270.02209 * 1 2 3 27 27 H 1.09002 * 109.47265 * 30.01520 * 1 2 3 28 28 H 1.08990 * 109.47532 * 150.01988 * 1 2 3 29 29 H 1.07999 * 119.88587 * 359.96404 * 3 2 1 30 30 H 1.09005 * 109.47134 * 97.55379 * 5 4 3 31 31 H 1.09001 * 109.46938 * 217.55457 * 5 4 3 32 32 H 1.09004 * 109.46952 * 337.55649 * 5 4 3 33 33 H 0.96701 * 117.00346 * 180.02562 * 9 7 6 34 34 H 1.07999 * 120.10954 * 180.29215 * 10 6 4 35 35 H 0.97003 * 119.99710 * 213.73060 * 12 11 10 36 36 H 1.09000 * 109.46832 * 180.02562 * 17 15 13 37 37 H 1.09005 * 109.47387 * 299.99541 * 17 15 13 38 38 H 1.08997 * 109.47662 * 59.99689 * 17 15 13 39 39 H 0.97007 * 120.00014 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1988 0.0000 4 6 3.5755 1.2071 0.0005 5 6 4.3213 2.5166 0.0011 6 6 4.2809 0.0016 0.0005 7 6 5.7583 0.0073 0.0005 8 8 6.3616 1.0600 -0.0572 9 8 6.4363 -1.1550 0.0647 10 6 3.5855 -1.2078 0.0057 11 6 2.1993 -1.2049 -0.0006 12 7 1.4970 -2.4154 -0.0011 13 6 1.9954 -3.4840 0.6517 14 8 3.0935 -3.4241 1.1633 15 6 1.1858 -4.7512 0.7513 16 1 0.9766 -5.1282 -0.2497 17 6 -0.1317 -4.4592 1.4720 18 6 1.9637 -5.7847 1.5245 19 1 2.9461 -5.5479 1.9052 20 6 1.4210 -7.0328 1.7457 21 7 0.2249 -7.3214 1.2816 22 14 2.3855 -8.3142 2.7034 23 1 2.0688 -8.1936 4.1492 24 1 2.0149 -9.6709 2.2269 25 1 3.8398 -8.0967 2.4955 26 1 -0.3633 0.0004 1.0277 27 1 -0.3634 0.8899 -0.5141 28 1 -0.3634 -0.8901 -0.5135 29 1 1.6521 2.1319 -0.0006 30 1 4.6181 2.7653 1.0201 31 1 5.2093 2.4293 -0.6250 32 1 3.6758 3.3025 -0.3913 33 1 7.4018 -1.1008 0.0623 34 1 4.1254 -2.1432 0.0105 35 1 0.6514 -2.4853 -0.4713 36 1 -0.7171 -5.3759 1.5445 37 1 0.0775 -4.0822 2.4732 38 1 -0.6942 -3.7118 0.9126 39 1 -0.1567 -8.1996 1.4369 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600154146.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:18 Heat of formation + Delta-G solvation = -129.121248 kcal Electronic energy + Delta-G solvation = -23137.623463 eV Core-core repulsion = 19623.035291 eV Total energy + Delta-G solvation = -3514.588173 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.94442 -41.07105 -39.53219 -37.29521 -36.04053 -35.83598 -33.80651 -33.01781 -31.87985 -28.70517 -27.72057 -27.19347 -24.96296 -24.02526 -23.39330 -21.47030 -21.01003 -19.49662 -18.83459 -18.23841 -17.72982 -16.85748 -16.77871 -16.40290 -16.36366 -16.12085 -15.64844 -15.01773 -14.80724 -14.50727 -14.42921 -14.25213 -13.98605 -13.53671 -13.47547 -13.06573 -12.97332 -12.86190 -12.76329 -12.65450 -12.58360 -12.55805 -12.33701 -12.23433 -12.03208 -11.25791 -11.13360 -11.04713 -10.61308 -10.33299 -9.86155 -9.01350 -8.16501 -6.26378 -0.39687 0.26537 1.39472 1.40608 1.41848 1.52944 1.82621 2.05874 2.21302 2.46584 2.69859 3.13912 3.69011 3.85299 3.88975 4.04224 4.27425 4.36208 4.40818 4.65731 4.73444 4.81338 4.82164 4.85266 4.89441 4.93948 4.96639 5.05301 5.12541 5.26806 5.37840 5.44990 5.48175 5.49776 5.67920 5.73653 5.90607 5.96700 6.18712 6.59693 6.81996 6.94485 7.32619 7.44311 8.89247 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.019760 B = 0.004366 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.675771 B = 6412.295493 C = 7670.453500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.065 4.065 3 C -0.110 4.110 4 C -0.038 4.038 5 C -0.119 4.119 6 C -0.147 4.147 7 C 0.531 3.469 8 O -0.527 6.527 9 O -0.513 6.513 10 C -0.082 4.082 11 C 0.111 3.889 12 N -0.665 5.665 13 C 0.520 3.480 14 O -0.560 6.560 15 C 0.028 3.972 16 H 0.048 0.952 17 C -0.120 4.120 18 C -0.530 4.530 19 H 0.049 0.951 20 C 0.023 3.977 21 N -0.908 5.908 22 Si 0.953 3.047 23 H -0.275 1.275 24 H -0.275 1.275 25 H -0.280 1.280 26 H 0.083 0.917 27 H 0.103 0.897 28 H 0.071 0.929 29 H 0.175 0.825 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.430 0.570 34 H 0.125 0.875 35 H 0.422 0.578 36 H 0.073 0.927 37 H 0.022 0.978 38 H 0.056 0.944 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.104 18.157 -5.240 18.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.067 4.067 3 C -0.128 4.128 4 C -0.039 4.039 5 C -0.175 4.175 6 C -0.149 4.149 7 C 0.377 3.623 8 O -0.420 6.420 9 O -0.327 6.327 10 C -0.103 4.103 11 C 0.017 3.983 12 N -0.313 5.313 13 C 0.311 3.689 14 O -0.437 6.437 15 C 0.007 3.993 16 H 0.066 0.934 17 C -0.178 4.178 18 C -0.568 4.568 19 H 0.067 0.933 20 C -0.176 4.176 21 N -0.548 5.548 22 Si 0.779 3.221 23 H -0.201 1.201 24 H -0.200 1.200 25 H -0.205 1.205 26 H 0.101 0.899 27 H 0.122 0.878 28 H 0.090 0.910 29 H 0.192 0.808 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.292 0.708 34 H 0.143 0.857 35 H 0.262 0.738 36 H 0.091 0.909 37 H 0.041 0.959 38 H 0.075 0.925 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.248 18.202 -4.881 18.846 hybrid contribution 1.098 -1.385 0.394 1.811 sum 1.347 16.816 -4.487 17.457 Atomic orbital electron populations 1.20916 0.87842 1.04714 1.03833 1.20366 0.98302 0.90646 0.97395 1.21095 0.92052 0.98441 1.01244 1.20260 0.94471 0.94120 0.95053 1.21129 1.00896 0.92168 1.03341 1.18913 0.89238 0.94422 1.12315 1.20941 0.88982 0.80892 0.71452 1.90772 1.70902 1.32295 1.47996 1.84660 1.28203 1.34933 1.84902 1.21526 0.93897 0.98187 0.96648 1.17818 0.90824 0.86569 1.03127 1.43649 1.25727 1.08762 1.53160 1.21879 0.86456 0.85475 0.75072 1.90535 1.22397 1.83287 1.47445 1.18826 0.93856 0.88273 0.98370 0.93440 1.21574 0.96647 1.01647 0.97950 1.21255 1.02780 0.97510 1.35267 0.93313 1.25528 0.95957 0.99652 0.96497 1.69927 1.16138 1.22346 1.46340 0.85637 0.78831 0.78604 0.79064 1.20070 1.19975 1.20509 0.89897 0.87826 0.91001 0.80754 0.91032 0.89984 0.89028 0.70821 0.85710 0.73845 0.90867 0.95875 0.92498 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.80 9.76 71.23 0.70 -1.11 16 2 C -0.06 -1.48 5.90 -19.69 -0.12 -1.60 16 3 C -0.11 -2.19 9.30 22.21 0.21 -1.99 16 4 C -0.04 -0.93 5.92 -19.58 -0.12 -1.05 16 5 C -0.12 -2.41 8.85 71.24 0.63 -1.78 16 6 C -0.15 -4.55 5.87 -20.11 -0.12 -4.67 16 7 C 0.53 16.02 8.24 70.33 0.58 16.60 16 8 O -0.53 -16.03 14.01 19.91 0.28 -15.75 16 9 O -0.51 -14.23 12.68 -56.21 -0.71 -14.95 16 10 C -0.08 -2.91 8.28 22.67 0.19 -2.73 16 11 C 0.11 3.51 6.30 38.11 0.24 3.75 16 12 N -0.67 -22.24 4.89 -303.60 -1.48 -23.72 16 13 C 0.52 23.17 7.00 87.66 0.61 23.78 16 14 O -0.56 -29.04 12.80 -3.07 -0.04 -29.08 16 15 C 0.03 1.35 2.63 -12.29 -0.03 1.32 16 16 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 17 C -0.12 -5.19 8.87 71.98 0.64 -4.55 16 18 C -0.53 -29.98 8.38 25.60 0.21 -29.76 16 19 H 0.05 2.97 6.75 -2.92 -0.02 2.95 16 20 C 0.02 1.27 5.30 84.66 0.45 1.72 16 21 N -0.91 -49.66 11.32 21.45 0.24 -49.42 16 22 Si 0.95 44.36 29.54 68.60 2.03 46.38 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 25 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 26 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 27 H 0.10 0.98 8.08 -2.39 -0.02 0.96 16 28 H 0.07 1.07 6.48 -2.39 -0.02 1.05 16 29 H 0.18 2.01 8.05 -2.91 -0.02 1.99 16 30 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.08 1.96 5.64 -2.39 -0.01 1.94 16 32 H 0.09 1.24 8.03 -2.38 -0.02 1.23 16 33 H 0.43 7.06 9.11 -74.06 -0.67 6.39 16 34 H 0.13 5.30 5.66 -2.91 -0.02 5.29 16 35 H 0.42 11.16 6.75 -92.71 -0.63 10.53 16 36 H 0.07 3.52 6.07 -2.39 -0.01 3.51 16 37 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.06 1.90 7.69 -2.39 -0.02 1.88 16 39 H 0.27 13.77 8.31 -92.70 -0.77 13.00 16 Total: -1.00 -71.88 326.34 4.20 -67.69 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -0.19 Total: 20.89 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 4.07 Total: -2.05 kcal Atomic # 7 Polarization: -71.90 SS G_CDS: -1.24 Total: -73.14 kcal Atomic # 8 Polarization: -59.30 SS G_CDS: -0.47 Total: -59.77 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -71.88 4.20 -67.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600154146.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.433 kcal (2) G-P(sol) polarization free energy of solvation -71.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds