Wall clock time and date at job start Tue Mar 31 2020 06:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38007 * 120.00827 * 2 1 4 4 C 1.38214 * 120.23018 * 180.25074 * 3 2 1 5 5 C 1.39004 * 120.23385 * 359.45055 * 4 3 2 6 6 N 1.39957 * 119.99717 * 180.27353 * 5 4 3 7 7 C 1.34775 * 120.00009 * 148.90738 * 6 5 4 8 8 O 1.21288 * 119.99763 * 354.23547 * 7 6 5 9 9 C 1.50697 * 119.99954 * 174.23085 * 7 6 5 10 10 C 1.53003 * 109.47116 * 180.02562 * 9 7 6 11 11 C 1.52994 * 109.47252 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47235 * 180.02562 * 11 10 9 13 13 H 1.08006 * 119.99712 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00220 * 179.97438 * 12 11 10 15 15 N 1.31522 * 120.00063 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00274 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47081 * 59.99973 * 16 14 12 18 18 H 1.48500 * 109.47293 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47126 * 300.00123 * 16 14 12 20 20 C 1.38579 * 120.00439 * 0.29236 * 5 4 3 21 21 C 1.39551 * 119.77402 * 359.97438 * 20 5 4 22 22 C 1.47746 * 120.11600 * 180.02562 * 21 20 5 23 23 O 1.21469 * 119.99978 * 173.72784 * 22 21 20 24 24 O 1.34713 * 119.99590 * 353.73210 * 22 21 20 25 25 H 1.09003 * 109.47209 * 262.75727 * 1 2 3 26 26 H 1.08996 * 109.46750 * 22.75451 * 1 2 3 27 27 H 1.09001 * 109.47070 * 142.75887 * 1 2 3 28 28 H 1.08003 * 119.88212 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.88691 * 179.72338 * 4 3 2 30 30 H 0.97001 * 119.99783 * 328.91138 * 6 5 4 31 31 H 1.08999 * 109.47078 * 299.99919 * 9 7 6 32 32 H 1.09000 * 109.47066 * 60.00150 * 9 7 6 33 33 H 1.09002 * 109.46923 * 300.00232 * 10 9 7 34 34 H 1.09000 * 109.47333 * 59.99944 * 10 9 7 35 35 H 1.08999 * 109.46695 * 299.99397 * 11 10 9 36 36 H 1.08996 * 109.47763 * 59.99758 * 11 10 9 37 37 H 0.96995 * 120.00471 * 179.97438 * 15 14 12 38 38 H 1.08001 * 120.11425 * 179.97438 * 20 5 4 39 39 H 0.96699 * 116.99251 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1951 0.0000 4 6 3.5793 1.2004 -0.0052 5 6 4.2839 0.0022 0.0010 6 7 5.6834 0.0135 0.0014 7 6 6.3651 -0.9776 0.6094 8 8 5.7698 -1.8219 1.2448 9 6 7.8669 -1.0366 0.4996 10 6 8.3876 -2.2492 1.2740 11 6 9.9124 -2.3088 1.1630 12 6 10.4252 -3.5034 1.9252 13 1 9.7327 -4.1548 2.4379 14 6 11.7782 -3.7649 1.9681 15 7 12.6213 -2.9721 1.3434 16 14 12.4139 -5.2453 2.9135 17 1 11.8268 -6.4851 2.3448 18 1 13.8938 -5.3032 2.8057 19 1 12.0265 -5.1241 4.3419 20 6 3.6007 -1.2034 0.0064 21 6 2.2052 -1.2092 0.0060 22 6 1.4692 -2.4902 0.0123 23 8 0.2599 -2.4953 0.1269 24 8 2.1392 -3.6526 -0.1090 25 1 -0.3634 -0.1296 1.0195 26 1 -0.3633 0.9477 -0.3975 27 1 -0.3633 -0.8181 -0.6219 28 1 1.6554 2.1294 0.0004 29 1 4.1138 2.1389 -0.0097 30 1 6.1628 0.7346 -0.4358 31 1 8.1513 -1.1261 -0.5488 32 1 8.2978 -0.1264 0.9166 33 1 8.1031 -2.1602 2.3224 34 1 7.9567 -3.1592 0.8566 35 1 10.1971 -2.3976 0.1147 36 1 10.3430 -1.3987 1.5806 37 1 13.5733 -3.1558 1.3739 38 1 4.1464 -2.1355 0.0108 39 1 1.6144 -4.4647 -0.0999 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600447213.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:15 Heat of formation + Delta-G solvation = -117.550578 kcal Electronic energy + Delta-G solvation = -22031.742066 eV Core-core repulsion = 18517.655635 eV Total energy + Delta-G solvation = -3514.086431 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.00371 -40.11389 -38.53801 -36.37887 -35.11959 -34.26146 -32.26393 -31.65985 -31.53080 -28.26759 -26.61959 -24.82763 -23.89449 -22.60103 -21.33855 -20.43437 -19.90040 -18.54065 -17.82148 -16.96354 -16.23747 -16.05686 -15.96694 -15.74505 -15.45532 -14.95926 -14.45271 -14.14809 -13.86650 -13.65634 -13.46535 -13.37233 -12.58120 -12.38439 -12.31846 -12.13069 -11.91862 -11.80177 -11.66594 -11.43251 -10.81335 -10.68559 -10.57917 -10.47856 -10.35754 -9.82769 -9.72119 -9.35844 -9.29575 -9.07614 -8.34201 -8.21829 -6.00051 -4.01727 0.43216 1.04748 2.26503 2.71229 2.81606 2.99468 3.35256 3.38832 3.42606 3.53338 4.43425 4.47483 4.65444 4.70502 4.81090 5.02143 5.13475 5.16806 5.36089 5.48193 5.54009 5.58062 5.59596 5.65418 5.77071 5.92932 6.01291 6.14501 6.16562 6.24641 6.40039 6.64992 6.70712 6.85476 7.10090 7.29821 7.66819 7.71666 7.79042 7.99973 8.16512 8.43542 9.05054 9.62459 11.11405 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.025869 B = 0.002787 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.121824 B =10044.115471 C =10961.450767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.041 4.041 3 C -0.114 4.114 4 C -0.110 4.110 5 C 0.136 3.864 6 N -0.682 5.682 7 C 0.511 3.489 8 O -0.513 6.513 9 C -0.137 4.137 10 C -0.096 4.096 11 C 0.021 3.979 12 C -0.520 4.520 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.893 3.107 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.064 4.064 21 C -0.115 4.115 22 C 0.529 3.471 23 O -0.513 6.513 24 O -0.506 6.506 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.136 0.864 29 H 0.133 0.867 30 H 0.413 0.587 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.261 0.739 38 H 0.155 0.845 39 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.654 10.006 -6.526 24.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.043 4.043 3 C -0.133 4.133 4 C -0.130 4.130 5 C 0.041 3.959 6 N -0.328 5.328 7 C 0.301 3.699 8 O -0.387 6.387 9 C -0.177 4.177 10 C -0.134 4.134 11 C -0.016 4.016 12 C -0.558 4.558 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.084 4.084 21 C -0.117 4.117 22 C 0.375 3.625 23 O -0.403 6.403 24 O -0.317 6.317 25 H 0.094 0.906 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.153 0.847 29 H 0.151 0.849 30 H 0.249 0.751 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.035 0.965 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.172 0.828 39 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -21.881 9.725 -6.068 24.702 hybrid contribution 0.477 -0.858 0.314 1.031 sum -21.404 8.866 -5.754 23.871 Atomic orbital electron populations 1.21059 0.89913 1.02952 1.03588 1.19965 0.96839 0.91200 0.96248 1.20769 0.93259 0.97422 1.01821 1.21170 0.94490 0.96859 1.00529 1.17697 0.83675 0.93558 1.00947 1.43833 1.03875 1.28303 1.56774 1.21587 0.91421 0.79914 0.76991 1.90707 1.70758 1.38334 1.38866 1.21892 0.88249 1.03558 1.03974 1.21480 0.99233 0.94010 0.98713 1.19121 0.88131 0.97153 0.97203 1.21225 0.91965 1.10701 1.31899 0.92605 1.25014 0.97075 0.96671 0.95703 1.69948 1.02598 1.37901 1.43296 0.86647 0.77536 0.83240 0.80532 1.20204 1.21319 1.20222 1.21564 0.92606 0.99043 0.95191 1.18739 0.92948 0.90047 1.09981 1.20842 0.85210 0.84399 0.72059 1.90833 1.15193 1.87808 1.46510 1.84636 1.45210 1.16995 1.84881 0.90635 0.92065 0.89221 0.84665 0.84880 0.75117 0.88778 0.88926 0.92560 0.92514 0.96546 0.96565 0.92976 0.82753 0.72761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 8.68 36.00 0.31 -0.77 16 2 C -0.04 -0.43 5.92 -104.19 -0.62 -1.05 16 3 C -0.11 -0.98 9.65 -39.67 -0.38 -1.36 16 4 C -0.11 -0.97 9.95 -39.31 -0.39 -1.36 16 5 C 0.14 1.57 6.31 -83.74 -0.53 1.04 16 6 N -0.68 -7.49 5.35 -9.89 -0.05 -7.54 16 7 C 0.51 7.58 7.57 -10.99 -0.08 7.49 16 8 O -0.51 -9.55 13.54 5.55 0.08 -9.47 16 9 C -0.14 -2.07 5.70 -27.88 -0.16 -2.23 16 10 C -0.10 -1.98 4.44 -26.73 -0.12 -2.10 16 11 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 12 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 13 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 16 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 C -0.06 -0.85 8.23 -38.97 -0.32 -1.17 16 21 C -0.12 -1.42 5.87 -105.00 -0.62 -2.04 16 22 C 0.53 6.50 8.20 34.62 0.28 6.79 16 23 O -0.51 -6.78 14.14 -19.24 -0.27 -7.05 16 24 O -0.51 -5.38 12.70 -40.53 -0.51 -5.90 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.41 8.03 -51.93 -0.42 -0.01 16 27 H 0.09 0.93 5.92 -51.93 -0.31 0.63 16 28 H 0.14 0.77 8.05 -52.48 -0.42 0.35 16 29 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 30 H 0.41 3.02 8.81 -40.82 -0.36 2.66 16 31 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 34 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.15 2.37 5.83 -52.49 -0.31 2.07 16 39 H 0.41 2.35 9.11 45.56 0.42 2.76 16 LS Contribution 336.71 15.07 5.07 5.07 Total: -1.00 -35.14 336.71 -7.46 -42.60 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -4.32 Total: 1.50 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -3.17 Total: -9.97 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.68 Total: -33.59 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.71 Total: -22.42 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.14 -7.46 -42.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600447213.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.954 kcal (2) G-P(sol) polarization free energy of solvation -35.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds