Wall clock time and date at job start Tue Mar 31 2020 06:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38007 * 120.00827 * 2 1 4 4 C 1.38214 * 120.23018 * 180.25074 * 3 2 1 5 5 C 1.39004 * 120.23385 * 359.45055 * 4 3 2 6 6 N 1.39957 * 119.99717 * 180.27353 * 5 4 3 7 7 C 1.34775 * 120.00009 * 148.90738 * 6 5 4 8 8 O 1.21288 * 119.99763 * 354.23547 * 7 6 5 9 9 C 1.50697 * 119.99954 * 174.23085 * 7 6 5 10 10 C 1.53003 * 109.47116 * 180.02562 * 9 7 6 11 11 C 1.52994 * 109.47252 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47235 * 180.02562 * 11 10 9 13 13 H 1.08006 * 119.99712 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00220 * 179.97438 * 12 11 10 15 15 N 1.31522 * 120.00063 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00274 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47081 * 59.99973 * 16 14 12 18 18 H 1.48500 * 109.47293 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47126 * 300.00123 * 16 14 12 20 20 C 1.38579 * 120.00439 * 0.29236 * 5 4 3 21 21 C 1.39551 * 119.77402 * 359.97438 * 20 5 4 22 22 C 1.47746 * 120.11600 * 180.02562 * 21 20 5 23 23 O 1.21469 * 119.99978 * 173.72784 * 22 21 20 24 24 O 1.34713 * 119.99590 * 353.73210 * 22 21 20 25 25 H 1.09003 * 109.47209 * 262.75727 * 1 2 3 26 26 H 1.08996 * 109.46750 * 22.75451 * 1 2 3 27 27 H 1.09001 * 109.47070 * 142.75887 * 1 2 3 28 28 H 1.08003 * 119.88212 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.88691 * 179.72338 * 4 3 2 30 30 H 0.97001 * 119.99783 * 328.91138 * 6 5 4 31 31 H 1.08999 * 109.47078 * 299.99919 * 9 7 6 32 32 H 1.09000 * 109.47066 * 60.00150 * 9 7 6 33 33 H 1.09002 * 109.46923 * 300.00232 * 10 9 7 34 34 H 1.09000 * 109.47333 * 59.99944 * 10 9 7 35 35 H 1.08999 * 109.46695 * 299.99397 * 11 10 9 36 36 H 1.08996 * 109.47763 * 59.99758 * 11 10 9 37 37 H 0.96995 * 120.00471 * 179.97438 * 15 14 12 38 38 H 1.08001 * 120.11425 * 179.97438 * 20 5 4 39 39 H 0.96699 * 116.99251 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1951 0.0000 4 6 3.5793 1.2004 -0.0052 5 6 4.2839 0.0022 0.0010 6 7 5.6834 0.0135 0.0014 7 6 6.3651 -0.9776 0.6094 8 8 5.7698 -1.8219 1.2448 9 6 7.8669 -1.0366 0.4996 10 6 8.3876 -2.2492 1.2740 11 6 9.9124 -2.3088 1.1630 12 6 10.4252 -3.5034 1.9252 13 1 9.7327 -4.1548 2.4379 14 6 11.7782 -3.7649 1.9681 15 7 12.6213 -2.9721 1.3434 16 14 12.4139 -5.2453 2.9135 17 1 11.8268 -6.4851 2.3448 18 1 13.8938 -5.3032 2.8057 19 1 12.0265 -5.1241 4.3419 20 6 3.6007 -1.2034 0.0064 21 6 2.2052 -1.2092 0.0060 22 6 1.4692 -2.4902 0.0123 23 8 0.2599 -2.4953 0.1269 24 8 2.1392 -3.6526 -0.1090 25 1 -0.3634 -0.1296 1.0195 26 1 -0.3633 0.9477 -0.3975 27 1 -0.3633 -0.8181 -0.6219 28 1 1.6554 2.1294 0.0004 29 1 4.1138 2.1389 -0.0097 30 1 6.1628 0.7346 -0.4358 31 1 8.1513 -1.1261 -0.5488 32 1 8.2978 -0.1264 0.9166 33 1 8.1031 -2.1602 2.3224 34 1 7.9567 -3.1592 0.8566 35 1 10.1971 -2.3976 0.1147 36 1 10.3430 -1.3987 1.5806 37 1 13.5733 -3.1558 1.3739 38 1 4.1464 -2.1355 0.0108 39 1 1.6144 -4.4647 -0.0999 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600447213.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:14 Heat of formation + Delta-G solvation = -141.286702 kcal Electronic energy + Delta-G solvation = -22032.771341 eV Core-core repulsion = 18517.655635 eV Total energy + Delta-G solvation = -3515.115706 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.92317 -41.13688 -39.47698 -37.29457 -36.28563 -35.93182 -34.08047 -32.56984 -32.44210 -29.87260 -27.67939 -25.93942 -25.39775 -23.53344 -22.58483 -21.62915 -21.21752 -19.46713 -18.79270 -18.48766 -17.87537 -17.03262 -16.90918 -16.76516 -16.49535 -16.38338 -15.93363 -15.23375 -15.03506 -14.64899 -14.45119 -14.29828 -14.24025 -13.77767 -13.49347 -13.15791 -13.06444 -12.85816 -12.72240 -12.59598 -12.57024 -12.49413 -12.42286 -11.56069 -11.46375 -11.40732 -11.27555 -11.21893 -10.78983 -10.53381 -10.10554 -9.09355 -8.20068 -6.29644 -0.39796 0.20150 1.35809 1.39791 1.42150 1.50263 1.63865 1.97025 2.08858 2.41866 2.70503 3.13127 3.62205 3.83950 3.89746 3.96485 4.14303 4.23681 4.27388 4.38994 4.44461 4.74490 4.78107 4.82187 4.87372 4.97263 5.00958 5.10685 5.16166 5.20125 5.24901 5.34644 5.49086 5.54655 5.60659 5.76824 5.86968 5.88944 6.27886 6.40875 6.85914 6.91208 7.12459 7.38943 8.91155 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.025869 B = 0.002787 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.121824 B =10044.115471 C =10961.450767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.045 4.045 3 C -0.105 4.105 4 C -0.092 4.092 5 C 0.116 3.884 6 N -0.660 5.660 7 C 0.515 3.485 8 O -0.559 6.559 9 C -0.127 4.127 10 C -0.084 4.084 11 C 0.026 3.974 12 C -0.549 4.549 13 H 0.050 0.950 14 C 0.004 3.996 15 N -0.929 5.929 16 Si 0.959 3.041 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.270 1.270 20 C -0.086 4.086 21 C -0.138 4.138 22 C 0.526 3.474 23 O -0.529 6.529 24 O -0.513 6.513 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.175 0.825 29 H 0.172 0.828 30 H 0.433 0.567 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.041 0.959 34 H 0.040 0.960 35 H 0.002 0.998 36 H 0.003 0.997 37 H 0.265 0.735 38 H 0.125 0.875 39 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.351 12.104 -6.768 26.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.046 4.046 3 C -0.123 4.123 4 C -0.112 4.112 5 C 0.022 3.978 6 N -0.307 5.307 7 C 0.305 3.695 8 O -0.436 6.436 9 C -0.167 4.167 10 C -0.122 4.122 11 C -0.011 4.011 12 C -0.587 4.587 13 H 0.069 0.931 14 C -0.194 4.194 15 N -0.569 5.569 16 Si 0.784 3.216 17 H -0.195 1.195 18 H -0.204 1.204 19 H -0.195 1.195 20 C -0.107 4.107 21 C -0.140 4.140 22 C 0.373 3.627 23 O -0.421 6.421 24 O -0.327 6.327 25 H 0.089 0.911 26 H 0.110 0.890 27 H 0.091 0.909 28 H 0.192 0.808 29 H 0.189 0.811 30 H 0.273 0.727 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.021 0.979 36 H 0.021 0.979 37 H 0.073 0.927 38 H 0.142 0.858 39 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -22.589 11.849 -6.342 26.284 hybrid contribution 0.643 -1.479 0.356 1.651 sum -21.946 10.370 -5.985 25.000 Atomic orbital electron populations 1.21038 0.89052 1.03935 1.03141 1.20298 0.97615 0.91240 0.95461 1.21240 0.93299 0.98052 0.99701 1.21565 0.94728 0.97028 0.97866 1.17883 0.83597 0.94099 1.02223 1.43475 1.03945 1.27654 1.55663 1.21368 0.91154 0.80148 0.76845 1.90707 1.71410 1.40305 1.41210 1.21701 0.88791 1.01779 1.04387 1.21180 0.96123 0.96213 0.98729 1.19009 0.91040 0.95434 0.95597 1.21679 0.92550 1.11911 1.32533 0.93141 1.25873 0.97293 0.99638 0.96575 1.70049 1.02984 1.39523 1.44320 0.85595 0.77203 0.79596 0.79242 1.19505 1.20373 1.19502 1.21393 0.93128 0.98863 0.97266 1.18919 0.92797 0.90884 1.11369 1.21017 0.85084 0.84908 0.71718 1.90818 1.15638 1.88139 1.47507 1.84619 1.45809 1.17728 1.84537 0.91063 0.89041 0.90909 0.80773 0.81058 0.72738 0.86712 0.86523 0.94028 0.94071 0.97940 0.97854 0.92654 0.85760 0.70720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.90 8.68 71.24 0.62 -1.28 16 2 C -0.05 -0.86 5.92 -19.58 -0.12 -0.97 16 3 C -0.10 -1.38 9.65 22.21 0.21 -1.16 16 4 C -0.09 -1.27 9.95 22.45 0.22 -1.05 16 5 C 0.12 2.50 6.31 38.11 0.24 2.74 16 6 N -0.66 -13.26 5.35 -303.60 -1.62 -14.89 16 7 C 0.52 15.02 7.57 87.66 0.66 15.69 16 8 O -0.56 -21.47 13.54 -3.05 -0.04 -21.51 16 9 C -0.13 -3.73 5.70 29.85 0.17 -3.56 16 10 C -0.08 -3.55 4.44 30.59 0.14 -3.41 16 11 C 0.03 1.36 4.97 29.85 0.15 1.50 16 12 C -0.55 -31.90 9.11 25.60 0.23 -31.67 16 13 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 14 C 0.00 0.25 5.46 84.65 0.46 0.71 16 15 N -0.93 -55.79 13.29 21.45 0.28 -55.50 16 16 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 17 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 20 C -0.09 -2.33 8.23 22.67 0.19 -2.14 16 21 C -0.14 -3.43 5.87 -20.11 -0.12 -3.54 16 22 C 0.53 13.46 8.20 70.34 0.58 14.04 16 23 O -0.53 -14.35 14.14 19.94 0.28 -14.07 16 24 O -0.51 -11.66 12.70 -56.23 -0.71 -12.37 16 25 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.09 0.92 8.03 -2.39 -0.02 0.90 16 27 H 0.07 1.47 5.92 -2.39 -0.01 1.46 16 28 H 0.17 0.97 8.05 -2.91 -0.02 0.94 16 29 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 30 H 0.43 4.94 8.81 -92.71 -0.82 4.13 16 31 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 32 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 33 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 34 H 0.04 1.83 8.10 -2.39 -0.02 1.81 16 35 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 37 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 38 H 0.12 4.10 5.83 -2.91 -0.02 4.09 16 39 H 0.43 5.36 9.11 -74.06 -0.67 4.68 16 Total: -1.00 -78.85 336.71 3.46 -75.39 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -0.40 Total: 10.14 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: 3.64 Total: -14.10 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -1.34 Total: -70.39 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -0.47 Total: -47.96 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -78.85 3.46 -75.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600447213.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.896 kcal (2) G-P(sol) polarization free energy of solvation -78.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds