Wall clock time and date at job start Tue Mar 31 2020 06:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47510 * 2 1 4 4 C 1.52999 * 109.47180 * 53.29034 * 3 2 1 5 5 N 1.46501 * 109.46795 * 60.00500 * 4 3 2 6 6 C 1.34774 * 120.00220 * 179.97438 * 5 4 3 7 7 O 1.21692 * 119.99888 * 0.02562 * 6 5 4 8 8 C 1.46374 * 120.00227 * 179.97438 * 6 5 4 9 9 H 1.07996 * 119.99789 * 0.02562 * 8 6 5 10 10 C 1.40052 * 119.99709 * 180.02562 * 8 6 5 11 11 N 1.30666 * 120.00448 * 0.02562 * 10 8 6 12 12 Si 1.86798 * 119.99516 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.47030 * 89.99990 * 12 10 8 14 14 H 1.48500 * 109.47096 * 209.99777 * 12 10 8 15 15 H 1.48497 * 109.47415 * 329.99883 * 12 10 8 16 16 C 1.50700 * 109.47337 * 173.29619 * 3 2 1 17 17 O 1.20820 * 119.99837 * 359.97438 * 16 3 2 18 18 O 1.34228 * 119.99867 * 179.97438 * 16 3 2 19 19 C 1.50708 * 109.46920 * 293.29325 * 3 2 1 20 20 C 1.38231 * 119.99901 * 171.62907 * 19 3 2 21 21 C 1.38236 * 120.00101 * 180.02562 * 20 19 3 22 22 C 1.38237 * 119.99802 * 359.95485 * 21 20 19 23 23 C 1.38241 * 120.00094 * 0.27849 * 22 21 20 24 24 C 1.38232 * 119.99935 * 351.61187 * 19 3 2 25 25 H 1.08998 * 109.46966 * 52.22106 * 1 2 3 26 26 H 1.08996 * 109.47053 * 172.22306 * 1 2 3 27 27 H 1.08994 * 109.47010 * 292.22598 * 1 2 3 28 28 H 1.09004 * 109.47071 * 239.99635 * 2 1 3 29 29 H 1.08999 * 109.47234 * 120.00322 * 2 1 3 30 30 H 1.08998 * 109.47235 * 179.97438 * 4 3 2 31 31 H 1.08995 * 109.47197 * 300.00756 * 4 3 2 32 32 H 0.97003 * 119.99842 * 359.97438 * 5 4 3 33 33 H 0.96993 * 120.00315 * 179.97438 * 11 10 8 34 34 H 0.96706 * 116.99662 * 180.02562 * 18 16 3 35 35 H 1.08001 * 120.00069 * 359.97438 * 20 19 3 36 36 H 1.07997 * 120.00436 * 179.97438 * 21 20 19 37 37 H 1.07997 * 120.00382 * 180.02562 * 22 21 20 38 38 H 1.07996 * 119.99888 * 179.72298 * 23 22 21 39 39 H 1.08005 * 120.00175 * 359.97438 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.3972 2.2107 1.1564 5 7 1.7494 1.5683 2.4250 6 6 1.2925 2.0756 3.5870 7 8 0.5870 3.0671 3.5824 8 6 1.6439 1.4334 4.8546 9 1 2.2697 0.5532 4.8586 10 6 1.1686 1.9604 6.0620 11 7 0.4111 3.0250 6.0570 12 14 1.6178 1.1412 7.6795 13 1 2.8748 1.7343 8.2025 14 1 0.5244 1.3528 8.6619 15 1 1.8112 -0.3147 7.4602 16 6 3.5379 1.4456 0.1659 17 8 4.1360 0.4014 0.2735 18 8 4.2076 2.6086 0.1940 19 6 1.6778 2.1033 -1.3051 20 6 1.8802 3.4605 -1.4721 21 6 1.5475 4.0668 -2.6690 22 6 1.0132 3.3157 -3.6992 23 6 0.8062 1.9594 -3.5305 24 6 1.1435 1.3523 -2.3352 25 1 -0.3633 0.6296 -0.8122 26 1 -0.3633 -1.0182 -0.1391 27 1 -0.3633 0.3887 0.9513 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.7609 3.2382 1.1567 31 1 0.3139 2.2084 1.0364 32 1 2.3115 0.7777 2.4287 33 1 0.0816 3.3897 6.8932 34 1 5.1674 2.5600 0.3019 35 1 2.2976 4.0473 -0.6672 36 1 1.7052 5.1272 -2.7994 37 1 0.7535 3.7893 -4.6344 38 1 0.3846 1.3734 -4.3338 39 1 0.9860 0.2917 -2.2050 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605028562.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:10 Heat of formation + Delta-G solvation = -108.397059 kcal Electronic energy + Delta-G solvation = -23761.953445 eV Core-core repulsion = 20248.263940 eV Total energy + Delta-G solvation = -3513.689504 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.02022 -39.09852 -37.47760 -36.20300 -35.58836 -32.77626 -32.04870 -31.34652 -30.24616 -28.38689 -26.48124 -24.49994 -22.99147 -22.46310 -22.15063 -19.87763 -19.10770 -17.92445 -17.62863 -16.95390 -16.45252 -15.59368 -15.20201 -15.18417 -14.70223 -14.61198 -14.07980 -13.99909 -13.70099 -13.25572 -13.00964 -12.69686 -12.57250 -12.24549 -12.18062 -11.77320 -11.53119 -11.41781 -11.28431 -11.17420 -11.07655 -10.91543 -10.61204 -10.47938 -10.39783 -10.34006 -10.20870 -8.90366 -8.85473 -8.75799 -7.64256 -7.56770 -6.19449 -4.64705 1.23291 1.38931 2.34844 3.12051 3.14467 3.21427 3.25019 3.81114 4.09371 4.39450 4.57073 4.59490 4.89707 4.95674 4.99423 5.07802 5.13824 5.29271 5.41447 5.53692 5.56204 5.64212 5.76384 5.83935 5.91078 6.01416 6.08904 6.25662 6.29760 6.36811 6.43643 6.49834 6.55193 6.58759 6.63270 6.95318 7.43249 7.85088 8.00719 8.04221 8.30602 9.02152 9.47507 10.58420 10.76609 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.023099 B = 0.004344 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.904447 B = 6443.674085 C = 6605.596161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.103 4.103 3 C -0.017 4.017 4 C 0.148 3.852 5 N -0.768 5.768 6 C 0.557 3.443 7 O -0.578 6.578 8 C -0.544 4.544 9 H 0.067 0.933 10 C 0.088 3.912 11 N -0.767 5.767 12 Si 0.907 3.093 13 H -0.272 1.272 14 H -0.279 1.279 15 H -0.265 1.265 16 C 0.500 3.500 17 O -0.515 6.515 18 O -0.506 6.506 19 C -0.077 4.077 20 C -0.093 4.093 21 C -0.122 4.122 22 C -0.119 4.119 23 C -0.126 4.126 24 C -0.109 4.109 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.379 0.621 33 H 0.268 0.732 34 H 0.407 0.593 35 H 0.133 0.867 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.103 -2.353 -17.117 17.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.141 4.141 3 C -0.019 4.019 4 C 0.023 3.977 5 N -0.426 5.426 6 C 0.361 3.639 7 O -0.461 6.461 8 C -0.581 4.581 9 H 0.085 0.915 10 C -0.131 4.131 11 N -0.396 5.396 12 Si 0.732 3.268 13 H -0.198 1.198 14 H -0.204 1.204 15 H -0.189 1.189 16 C 0.342 3.658 17 O -0.403 6.403 18 O -0.317 6.317 19 C -0.077 4.077 20 C -0.111 4.111 21 C -0.140 4.140 22 C -0.137 4.137 23 C -0.145 4.145 24 C -0.127 4.127 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.212 0.788 33 H 0.079 0.921 34 H 0.265 0.735 35 H 0.151 0.849 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.193 -1.727 -17.025 17.252 hybrid contribution 1.210 -0.775 0.869 1.679 sum 3.403 -2.503 -16.156 16.699 Atomic orbital electron populations 1.22023 0.94319 1.01912 1.03527 1.21481 0.96807 0.92263 1.03536 1.19796 0.87458 0.99099 0.95549 1.20998 0.99341 0.95414 0.81978 1.46257 1.57998 1.33327 1.04974 1.18187 0.79642 0.83851 0.82231 1.90607 1.41077 1.27829 1.86606 1.20871 1.33786 1.13851 0.89633 0.91490 1.25688 0.93208 0.94018 1.00214 1.70012 1.24653 1.17508 1.27422 0.86382 0.78629 0.80336 0.81477 1.19759 1.20442 1.18894 1.23110 0.90716 0.80941 0.71066 1.90689 1.70082 1.33432 1.46069 1.84543 1.26970 1.35715 1.84489 1.19357 1.00856 0.94033 0.93491 1.21219 0.98070 0.94066 0.97783 1.21146 0.99517 0.99960 0.93376 1.21182 0.99277 0.94306 0.98912 1.21104 1.00936 0.95058 0.97354 1.21283 0.98266 1.00494 0.92635 0.91977 0.92306 0.91066 0.91100 0.90028 0.91934 0.91169 0.78841 0.92104 0.73477 0.84929 0.85907 0.86249 0.86061 0.84986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 8.43 37.16 0.31 -1.81 16 2 C -0.10 -1.45 3.61 -26.73 -0.10 -1.55 16 3 C -0.02 -0.27 0.36 -156.81 -0.06 -0.32 16 4 C 0.15 2.81 3.69 -4.04 -0.01 2.80 16 5 N -0.77 -17.15 5.04 -61.72 -0.31 -17.46 16 6 C 0.56 15.75 7.75 -12.99 -0.10 15.65 16 7 O -0.58 -18.54 15.02 5.20 0.08 -18.47 16 8 C -0.54 -15.44 9.54 -35.63 -0.34 -15.78 16 9 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 10 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16 11 N -0.77 -22.95 11.83 55.55 0.66 -22.30 16 12 Si 0.91 20.24 29.56 -169.99 -5.02 15.22 16 13 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 14 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 15 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 16 C 0.50 7.86 6.17 36.01 0.22 8.09 16 17 O -0.51 -8.98 16.64 -18.75 -0.31 -9.30 16 18 O -0.51 -6.86 12.10 -39.25 -0.47 -7.34 16 19 C -0.08 -1.04 4.38 -104.62 -0.46 -1.50 16 20 C -0.09 -1.23 8.46 -39.58 -0.33 -1.57 16 21 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 22 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 23 C -0.13 -1.30 10.05 -39.58 -0.40 -1.70 16 24 C -0.11 -1.28 7.45 -39.58 -0.29 -1.57 16 25 H 0.06 0.76 5.65 -51.93 -0.29 0.47 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.07 1.13 6.82 -51.93 -0.35 0.78 16 28 H 0.07 0.89 6.66 -51.93 -0.35 0.54 16 29 H 0.08 1.26 6.81 -51.93 -0.35 0.90 16 30 H 0.06 1.27 6.94 -51.93 -0.36 0.91 16 31 H 0.07 1.40 6.51 -51.93 -0.34 1.06 16 32 H 0.38 7.91 6.92 -40.82 -0.28 7.63 16 33 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 34 H 0.41 3.72 9.10 45.56 0.41 4.13 16 35 H 0.13 1.82 6.57 -52.49 -0.34 1.47 16 36 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.13 1.39 5.14 -52.48 -0.27 1.12 16 LS Contribution 322.56 15.07 4.86 4.86 Total: -1.00 -35.58 322.56 -6.74 -42.32 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -3.76 Total: 12.70 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -2.45 Total: -0.25 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.35 Total: -39.76 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: -0.71 Total: -35.10 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.58 -6.74 -42.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605028562.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.077 kcal (2) G-P(sol) polarization free energy of solvation -35.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds