Wall clock time and date at job start Tue Mar 31 2020 06:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47510 * 2 1 4 4 C 1.52999 * 109.47180 * 53.29034 * 3 2 1 5 5 N 1.46501 * 109.46795 * 60.00500 * 4 3 2 6 6 C 1.34774 * 120.00220 * 179.97438 * 5 4 3 7 7 O 1.21692 * 119.99888 * 0.02562 * 6 5 4 8 8 C 1.46374 * 120.00227 * 179.97438 * 6 5 4 9 9 H 1.07996 * 119.99789 * 0.02562 * 8 6 5 10 10 C 1.40052 * 119.99709 * 180.02562 * 8 6 5 11 11 N 1.30666 * 120.00448 * 0.02562 * 10 8 6 12 12 Si 1.86798 * 119.99516 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.47030 * 89.99990 * 12 10 8 14 14 H 1.48500 * 109.47096 * 209.99777 * 12 10 8 15 15 H 1.48497 * 109.47415 * 329.99883 * 12 10 8 16 16 C 1.50700 * 109.47337 * 173.29619 * 3 2 1 17 17 O 1.20820 * 119.99837 * 359.97438 * 16 3 2 18 18 O 1.34228 * 119.99867 * 179.97438 * 16 3 2 19 19 C 1.50708 * 109.46920 * 293.29325 * 3 2 1 20 20 C 1.38231 * 119.99901 * 171.62907 * 19 3 2 21 21 C 1.38236 * 120.00101 * 180.02562 * 20 19 3 22 22 C 1.38237 * 119.99802 * 359.95485 * 21 20 19 23 23 C 1.38241 * 120.00094 * 0.27849 * 22 21 20 24 24 C 1.38232 * 119.99935 * 351.61187 * 19 3 2 25 25 H 1.08998 * 109.46966 * 52.22106 * 1 2 3 26 26 H 1.08996 * 109.47053 * 172.22306 * 1 2 3 27 27 H 1.08994 * 109.47010 * 292.22598 * 1 2 3 28 28 H 1.09004 * 109.47071 * 239.99635 * 2 1 3 29 29 H 1.08999 * 109.47234 * 120.00322 * 2 1 3 30 30 H 1.08998 * 109.47235 * 179.97438 * 4 3 2 31 31 H 1.08995 * 109.47197 * 300.00756 * 4 3 2 32 32 H 0.97003 * 119.99842 * 359.97438 * 5 4 3 33 33 H 0.96993 * 120.00315 * 179.97438 * 11 10 8 34 34 H 0.96706 * 116.99662 * 180.02562 * 18 16 3 35 35 H 1.08001 * 120.00069 * 359.97438 * 20 19 3 36 36 H 1.07997 * 120.00436 * 179.97438 * 21 20 19 37 37 H 1.07997 * 120.00382 * 180.02562 * 22 21 20 38 38 H 1.07996 * 119.99888 * 179.72298 * 23 22 21 39 39 H 1.08005 * 120.00175 * 359.97438 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.3972 2.2107 1.1564 5 7 1.7494 1.5683 2.4250 6 6 1.2925 2.0756 3.5870 7 8 0.5870 3.0671 3.5824 8 6 1.6439 1.4334 4.8546 9 1 2.2697 0.5532 4.8586 10 6 1.1686 1.9604 6.0620 11 7 0.4111 3.0250 6.0570 12 14 1.6178 1.1412 7.6795 13 1 2.8748 1.7343 8.2025 14 1 0.5244 1.3528 8.6619 15 1 1.8112 -0.3147 7.4602 16 6 3.5379 1.4456 0.1659 17 8 4.1360 0.4014 0.2735 18 8 4.2076 2.6086 0.1940 19 6 1.6778 2.1033 -1.3051 20 6 1.8802 3.4605 -1.4721 21 6 1.5475 4.0668 -2.6690 22 6 1.0132 3.3157 -3.6992 23 6 0.8062 1.9594 -3.5305 24 6 1.1435 1.3523 -2.3352 25 1 -0.3633 0.6296 -0.8122 26 1 -0.3633 -1.0182 -0.1391 27 1 -0.3633 0.3887 0.9513 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.7609 3.2382 1.1567 31 1 0.3139 2.2084 1.0364 32 1 2.3115 0.7777 2.4287 33 1 0.0816 3.3897 6.8932 34 1 5.1674 2.5600 0.3019 35 1 2.2976 4.0473 -0.6672 36 1 1.7052 5.1272 -2.7994 37 1 0.7535 3.7893 -4.6344 38 1 0.3846 1.3734 -4.3338 39 1 0.9860 0.2917 -2.2050 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605028562.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:09 Heat of formation + Delta-G solvation = -133.579388 kcal Electronic energy + Delta-G solvation = -23763.045433 eV Core-core repulsion = 20248.263940 eV Total energy + Delta-G solvation = -3514.781492 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.22834 -40.14883 -39.36043 -37.51693 -36.94661 -34.77612 -33.96724 -32.36082 -31.20277 -29.78371 -28.34655 -26.10001 -24.15072 -23.49314 -23.11042 -21.77038 -20.40539 -19.43297 -19.13448 -18.16427 -17.74046 -17.38748 -16.76808 -16.32514 -15.93859 -15.87817 -15.72795 -15.39927 -14.91356 -14.60796 -14.39111 -14.16252 -13.83091 -13.59945 -13.37977 -13.15838 -13.03179 -12.83347 -12.70508 -12.69520 -12.62257 -12.35268 -12.09149 -12.03841 -11.69949 -11.62301 -11.51222 -10.94578 -9.93266 -9.78021 -9.67460 -9.56346 -8.31275 -6.88169 0.31255 0.51517 1.08873 1.39157 1.40330 1.55737 2.01558 2.23231 2.45139 2.85476 2.98421 3.40366 3.52921 3.59985 3.71953 4.09545 4.15860 4.20453 4.29137 4.34317 4.46460 4.59846 4.61966 4.66339 4.77092 4.88859 5.01137 5.04458 5.15843 5.18410 5.29725 5.39030 5.47759 5.58099 5.63498 5.65173 5.82053 6.08059 6.10969 6.20246 6.84707 6.89311 7.43034 8.44689 8.64390 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.023099 B = 0.004344 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.904447 B = 6443.674085 C = 6605.596161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.102 4.102 3 C -0.008 4.008 4 C 0.155 3.845 5 N -0.754 5.754 6 C 0.542 3.458 7 O -0.627 6.627 8 C -0.574 4.574 9 H 0.082 0.918 10 C 0.032 3.968 11 N -0.818 5.818 12 Si 0.996 3.004 13 H -0.262 1.262 14 H -0.270 1.270 15 H -0.251 1.251 16 C 0.499 3.501 17 O -0.534 6.534 18 O -0.506 6.506 19 C -0.096 4.096 20 C -0.114 4.114 21 C -0.128 4.128 22 C -0.114 4.114 23 C -0.124 4.124 24 C -0.114 4.114 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.036 0.964 28 H 0.093 0.907 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.058 0.942 32 H 0.388 0.612 33 H 0.275 0.725 34 H 0.425 0.575 35 H 0.115 0.885 36 H 0.140 0.860 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.491 -3.718 -18.476 19.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.139 4.139 3 C -0.009 4.009 4 C 0.031 3.969 5 N -0.409 5.409 6 C 0.347 3.653 7 O -0.514 6.514 8 C -0.610 4.610 9 H 0.100 0.900 10 C -0.184 4.184 11 N -0.447 5.447 12 Si 0.815 3.185 13 H -0.187 1.187 14 H -0.195 1.195 15 H -0.175 1.175 16 C 0.342 3.658 17 O -0.424 6.424 18 O -0.319 6.319 19 C -0.096 4.096 20 C -0.132 4.132 21 C -0.146 4.146 22 C -0.132 4.132 23 C -0.141 4.141 24 C -0.132 4.132 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.055 0.945 28 H 0.112 0.888 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.222 0.778 33 H 0.085 0.915 34 H 0.287 0.713 35 H 0.133 0.867 36 H 0.158 0.842 37 H 0.168 0.832 38 H 0.170 0.830 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.622 -3.108 -18.431 18.874 hybrid contribution 1.103 -0.278 1.161 1.625 sum 3.725 -3.386 -17.270 17.989 Atomic orbital electron populations 1.21961 0.93700 1.03364 1.02013 1.21503 0.97253 0.91381 1.03760 1.19662 0.86988 0.99398 0.94868 1.20948 0.98950 0.95033 0.81997 1.45886 1.56947 1.33093 1.05011 1.18517 0.79357 0.83469 0.83983 1.90559 1.43249 1.29861 1.87686 1.21384 1.34523 1.14651 0.90482 0.89989 1.26915 0.92374 0.94345 1.04723 1.70166 1.25957 1.19455 1.29167 0.85044 0.78642 0.79491 0.75278 1.18652 1.19503 1.17450 1.23220 0.91042 0.81013 0.70571 1.90674 1.70554 1.34045 1.47093 1.84521 1.28654 1.34825 1.83914 1.19285 1.02821 0.94362 0.93160 1.21218 0.99352 0.94150 0.98480 1.21402 0.99207 1.01069 0.92874 1.21583 0.97695 0.94370 0.99549 1.21497 0.99796 0.95450 0.97381 1.21470 0.97910 1.01084 0.92705 0.90860 0.89982 0.94499 0.88843 0.91712 0.93683 0.92346 0.77850 0.91461 0.71336 0.86675 0.84229 0.83202 0.82985 0.83753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 8.43 71.98 0.61 -3.37 16 2 C -0.10 -2.80 3.61 30.59 0.11 -2.69 16 3 C -0.01 -0.23 0.36 -53.67 -0.02 -0.25 16 4 C 0.16 6.21 3.69 86.38 0.32 6.53 16 5 N -0.75 -35.06 5.04 -467.41 -2.35 -37.41 16 6 C 0.54 31.96 7.75 86.36 0.67 32.63 16 7 O -0.63 -42.24 15.02 -4.32 -0.06 -42.31 16 8 C -0.57 -33.19 9.54 24.83 0.24 -32.95 16 9 H 0.08 4.33 7.85 -2.91 -0.02 4.31 16 10 C 0.03 1.80 5.50 85.31 0.47 2.27 16 11 N -0.82 -50.30 11.83 21.84 0.26 -50.04 16 12 Si 1.00 41.49 29.56 68.60 2.03 43.52 16 13 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 14 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 15 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 16 C 0.50 15.77 6.17 71.24 0.44 16.21 16 17 O -0.53 -18.48 16.64 21.98 0.37 -18.11 16 18 O -0.51 -13.88 12.10 -51.39 -0.62 -14.50 16 19 C -0.10 -2.54 4.38 -19.86 -0.09 -2.63 16 20 C -0.11 -3.01 8.46 22.27 0.19 -2.82 16 21 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 22 C -0.11 -1.95 10.05 22.27 0.22 -1.72 16 23 C -0.12 -2.12 10.05 22.27 0.22 -1.90 16 24 C -0.11 -2.43 7.45 22.27 0.17 -2.26 16 25 H 0.07 1.72 5.65 -2.39 -0.01 1.71 16 26 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.04 1.20 6.82 -2.39 -0.02 1.19 16 28 H 0.09 2.17 6.66 -2.38 -0.02 2.15 16 29 H 0.06 2.00 6.81 -2.39 -0.02 1.98 16 30 H 0.04 1.95 6.94 -2.39 -0.02 1.93 16 31 H 0.06 2.48 6.51 -2.39 -0.02 2.46 16 32 H 0.39 16.67 6.92 -92.71 -0.64 16.03 16 33 H 0.28 15.29 8.29 -92.71 -0.77 14.52 16 34 H 0.43 7.67 9.10 -74.05 -0.67 7.00 16 35 H 0.12 3.35 6.57 -2.91 -0.02 3.33 16 36 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 37 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 38 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 39 H 0.14 2.63 5.14 -2.91 -0.01 2.62 16 Total: -1.00 -79.81 322.56 3.18 -76.64 By element: Atomic # 1 Polarization: 37.83 SS G_CDS: -0.20 Total: 37.62 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 3.77 Total: 4.60 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -2.10 Total: -87.45 kcal Atomic # 8 Polarization: -74.60 SS G_CDS: -0.32 Total: -74.92 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -79.81 3.18 -76.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605028562.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.943 kcal (2) G-P(sol) polarization free energy of solvation -79.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds