Wall clock time and date at job start Tue Mar 31 2020 06:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38279 * 119.93129 * 2 1 4 4 C 1.38112 * 120.07227 * 180.27773 * 3 2 1 5 5 C 1.38880 * 119.92591 * 359.46855 * 4 3 2 6 6 N 1.39921 * 120.06637 * 180.29734 * 5 4 3 7 7 C 1.46504 * 119.99709 * 247.88943 * 6 5 4 8 8 C 1.50697 * 109.46906 * 90.00866 * 7 6 5 9 9 H 1.08004 * 120.00315 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00353 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99420 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00378 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47149 * 89.99896 * 12 10 8 14 14 H 1.48503 * 109.46757 * 210.00522 * 12 10 8 15 15 H 1.48503 * 109.46892 * 329.99854 * 12 10 8 16 16 C 1.34777 * 120.00051 * 67.90141 * 6 5 4 17 17 O 1.21286 * 120.00048 * 4.72389 * 16 6 5 18 18 C 1.50700 * 119.99602 * 184.73635 * 16 6 5 19 19 C 1.53002 * 109.46688 * 179.97438 * 18 16 6 20 20 C 1.50704 * 109.47004 * 179.97438 * 19 18 16 21 21 O 1.20828 * 120.00263 * 359.97438 * 20 19 18 22 22 O 1.34227 * 119.99920 * 179.97438 * 20 19 18 23 23 C 1.38874 * 119.85729 * 0.27850 * 5 4 3 24 24 C 1.38114 * 119.93006 * 359.97438 * 23 5 4 25 25 H 1.08997 * 109.47146 * 270.23432 * 1 2 3 26 26 H 1.09004 * 109.47265 * 30.23327 * 1 2 3 27 27 H 1.08997 * 109.47241 * 150.23012 * 1 2 3 28 28 H 1.08000 * 119.96745 * 0.04534 * 3 2 1 29 29 H 1.07999 * 120.04037 * 179.73762 * 4 3 2 30 30 H 1.08998 * 109.47136 * 210.00180 * 7 6 5 31 31 H 1.08997 * 109.47384 * 330.00615 * 7 6 5 32 32 H 0.97011 * 119.99942 * 179.97438 * 11 10 8 33 33 H 1.09006 * 109.46923 * 299.99072 * 18 16 6 34 34 H 1.08999 * 109.47466 * 59.99499 * 18 16 6 35 35 H 1.08993 * 109.47113 * 299.99242 * 19 18 16 36 36 H 1.08999 * 109.47271 * 59.99754 * 19 18 16 37 37 H 0.96701 * 117.00387 * 180.02562 * 22 20 19 38 38 H 1.08001 * 120.02798 * 180.02562 * 23 5 4 39 39 H 1.08000 * 119.96158 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 -0.0058 5 6 4.2739 -0.0001 -0.0005 6 7 5.6731 -0.0001 0.0000 7 6 6.4059 -0.4826 -1.1732 8 6 6.6575 0.6660 -2.1157 9 1 6.3062 1.6564 -1.8661 10 6 7.3361 0.4528 -3.2969 11 7 7.7634 -0.7532 -3.6011 12 14 7.6473 1.8765 -4.4655 13 1 8.9416 2.5208 -4.1271 14 1 7.6961 1.3700 -5.8607 15 1 6.5512 2.8703 -4.3378 16 6 6.3466 0.4437 1.0798 17 8 5.7430 0.7622 2.0823 18 6 7.8498 0.5442 1.0412 19 6 8.3601 1.0716 2.3837 20 6 9.8634 1.1716 2.3455 21 8 10.4649 0.8532 1.3471 22 8 10.5341 1.6144 3.4205 23 6 3.5780 -1.2019 0.0048 24 6 2.1968 -1.1984 0.0053 25 1 -0.3633 0.0042 1.0276 26 1 -0.3634 0.8879 -0.5175 27 1 -0.3633 -0.8920 -0.5102 28 1 1.6553 2.1327 0.0007 29 1 4.1164 2.1380 -0.0101 30 1 7.3583 -0.9083 -0.8570 31 1 5.8170 -1.2467 -1.6806 32 1 8.2405 -0.9034 -4.4324 33 1 8.2751 -0.4415 0.8524 34 1 8.1480 1.2271 0.2458 35 1 7.9349 2.0573 2.5722 36 1 8.0619 0.3890 3.1794 37 1 11.4973 1.6615 3.3484 38 1 4.1163 -2.1382 0.0094 39 1 1.6551 -2.1327 0.0098 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605284491.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:46 Heat of formation + Delta-G solvation = -131.519023 kcal Electronic energy + Delta-G solvation = -22947.703382 eV Core-core repulsion = 19433.011234 eV Total energy + Delta-G solvation = -3514.692148 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.64205 -41.08188 -39.59352 -37.15079 -36.90588 -34.80387 -34.09997 -32.61839 -31.86982 -29.34539 -28.13391 -26.38717 -25.01762 -23.52846 -22.94478 -21.76604 -20.20193 -19.14380 -18.74258 -18.46208 -17.83490 -17.34890 -16.85751 -16.55974 -16.36403 -16.12887 -15.66353 -15.25828 -14.54544 -14.51671 -14.37524 -14.29615 -14.03626 -14.02474 -13.58483 -13.14251 -13.01132 -12.93794 -12.76265 -12.59799 -12.54321 -12.45269 -12.25554 -12.09890 -12.03101 -11.72671 -11.63959 -10.93657 -10.61961 -10.02440 -9.84283 -9.12050 -8.24218 -6.38664 0.36629 0.50206 1.20585 1.38507 1.39456 1.48616 1.60131 1.89679 2.32543 2.45145 2.82991 3.06911 3.63080 3.83460 3.96949 4.03619 4.07321 4.10594 4.46288 4.50220 4.53133 4.58185 4.61744 4.76437 4.85472 4.90467 4.93905 5.00048 5.09881 5.17166 5.21848 5.41883 5.55790 5.62138 5.67851 5.69488 5.80049 5.99268 6.16354 6.43222 6.72207 7.01235 7.19883 7.34108 8.81793 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.010088 B = 0.006016 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.967732 B = 4653.042281 C = 6755.596512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.098 4.098 3 C -0.114 4.114 4 C -0.125 4.125 5 C 0.128 3.872 6 N -0.561 5.561 7 C 0.255 3.745 8 C -0.545 4.545 9 H 0.053 0.947 10 C 0.022 3.978 11 N -0.919 5.919 12 Si 0.955 3.045 13 H -0.274 1.274 14 H -0.278 1.278 15 H -0.270 1.270 16 C 0.521 3.479 17 O -0.574 6.574 18 C -0.117 4.117 19 C -0.089 4.089 20 C 0.490 3.510 21 O -0.549 6.549 22 O -0.508 6.508 23 C -0.136 4.136 24 C -0.111 4.111 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.146 0.854 29 H 0.105 0.895 30 H 0.035 0.965 31 H 0.020 0.980 32 H 0.268 0.732 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.428 0.572 38 H 0.120 0.880 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.317 2.085 10.090 12.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.098 4.098 3 C -0.132 4.132 4 C -0.145 4.145 5 C 0.038 3.962 6 N -0.288 5.288 7 C 0.136 3.864 8 C -0.583 4.583 9 H 0.072 0.928 10 C -0.178 4.178 11 N -0.558 5.558 12 Si 0.780 3.220 13 H -0.199 1.199 14 H -0.204 1.204 15 H -0.194 1.194 16 C 0.312 3.688 17 O -0.455 6.455 18 C -0.157 4.157 19 C -0.127 4.127 20 C 0.333 3.667 21 O -0.440 6.440 22 O -0.321 6.321 23 C -0.156 4.156 24 C -0.129 4.129 25 H 0.100 0.900 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.164 0.836 29 H 0.123 0.877 30 H 0.053 0.947 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.290 0.710 38 H 0.138 0.862 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.754 2.025 10.222 12.418 hybrid contribution 1.476 0.501 -1.174 1.952 sum -5.277 2.526 9.048 10.775 Atomic orbital electron populations 1.20798 0.88224 1.03866 1.03280 1.20315 0.98053 0.92299 0.99122 1.21154 0.92399 0.99287 1.00393 1.21271 0.95564 0.96653 1.00990 1.17931 0.83006 0.94311 1.00990 1.45842 1.04189 1.62115 1.16649 1.19194 0.91293 0.94461 0.81480 1.21579 1.36874 0.95292 1.04602 0.92850 1.25644 0.94903 0.98138 0.99147 1.70004 1.38371 1.22129 1.25274 0.85589 0.78700 0.79458 0.78213 1.19935 1.20375 1.19424 1.20759 0.90584 0.75720 0.81744 1.90609 1.71333 1.51357 1.32216 1.21303 0.90589 1.04849 0.98913 1.20989 0.86571 1.06533 0.98624 1.23427 0.91721 0.71758 0.79745 1.90784 1.71278 1.47280 1.34665 1.84483 1.28610 1.78177 1.40870 1.21353 0.95654 0.96710 1.01884 1.21179 0.92420 0.99211 1.00090 0.89988 0.90557 0.90281 0.83607 0.87701 0.94664 0.96213 0.92254 0.88527 0.88564 0.86113 0.85697 0.70993 0.86196 0.83023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 10.01 71.24 0.71 -1.13 16 2 C -0.10 -2.62 5.88 -19.85 -0.12 -2.74 16 3 C -0.11 -3.47 9.69 22.25 0.22 -3.25 16 4 C -0.13 -4.82 9.55 22.39 0.21 -4.60 16 5 C 0.13 5.32 4.75 38.16 0.18 5.51 16 6 N -0.56 -24.89 2.51 -635.30 -1.59 -26.48 16 7 C 0.26 12.71 4.88 85.63 0.42 13.12 16 8 C -0.55 -29.26 9.16 25.60 0.23 -29.03 16 9 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 10 C 0.02 1.21 5.46 84.65 0.46 1.67 16 11 N -0.92 -52.12 13.29 21.45 0.28 -51.83 16 12 Si 0.96 43.12 29.54 68.60 2.03 45.15 16 13 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 14 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 15 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 16 C 0.52 21.67 7.53 87.66 0.66 22.33 16 17 O -0.57 -24.79 15.74 -3.05 -0.05 -24.83 16 18 C -0.12 -4.30 3.65 29.85 0.11 -4.19 16 19 C -0.09 -2.54 5.10 29.85 0.15 -2.39 16 20 C 0.49 13.64 8.33 71.24 0.59 14.23 16 21 O -0.55 -19.86 16.74 21.96 0.37 -19.49 16 22 O -0.51 -10.14 13.42 -51.38 -0.69 -10.83 16 23 C -0.14 -4.96 9.69 22.39 0.22 -4.74 16 24 C -0.11 -3.20 9.69 22.25 0.22 -2.98 16 25 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 27 H 0.08 1.17 8.08 -2.39 -0.02 1.15 16 28 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 29 H 0.10 4.19 8.06 -2.91 -0.02 4.16 16 30 H 0.04 1.80 6.47 -2.39 -0.02 1.79 16 31 H 0.02 1.05 7.86 -2.39 -0.02 1.03 16 32 H 0.27 14.42 8.31 -92.70 -0.77 13.64 16 33 H 0.10 3.63 7.22 -2.38 -0.02 3.61 16 34 H 0.10 3.94 7.87 -2.39 -0.02 3.92 16 35 H 0.12 3.21 8.10 -2.39 -0.02 3.19 16 36 H 0.13 3.18 8.10 -2.39 -0.02 3.16 16 37 H 0.43 4.73 9.10 -74.06 -0.67 4.05 16 38 H 0.12 4.23 8.06 -2.91 -0.02 4.21 16 39 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -69.78 343.31 5.01 -64.77 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.39 Total: 21.75 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 4.27 Total: 1.80 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -1.31 Total: -78.32 kcal Atomic # 8 Polarization: -54.79 SS G_CDS: -0.37 Total: -55.16 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -69.78 5.01 -64.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605284491.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.750 kcal (2) G-P(sol) polarization free energy of solvation -69.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds