Wall clock time and date at job start Tue Mar 31 2020 06:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50703 * 109.46507 * 2 1 4 4 C 1.38381 * 119.84748 * 269.72350 * 3 2 1 5 5 C 1.37932 * 120.15192 * 179.72705 * 4 3 2 6 6 C 1.39647 * 119.84302 * 0.57091 * 5 4 3 7 7 C 1.47727 * 120.14936 * 179.68157 * 6 5 4 8 8 O 1.21591 * 120.00066 * 151.25036 * 7 6 5 9 9 N 1.34781 * 120.00012 * 331.24872 * 7 6 5 10 10 C 1.36867 * 119.99760 * 186.86095 * 9 7 6 11 11 H 1.08002 * 119.99765 * 220.14174 * 10 9 7 12 12 C 1.39047 * 120.00594 * 40.14355 * 10 9 7 13 13 N 1.31361 * 120.00035 * 20.49505 * 12 10 9 14 14 Si 1.86798 * 120.00205 * 200.50349 * 12 10 9 15 15 H 1.48505 * 109.47338 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47314 * 119.99688 * 14 12 10 17 17 H 1.48494 * 109.47205 * 239.99839 * 14 12 10 18 18 C 1.46497 * 120.00081 * 6.86048 * 9 7 6 19 19 C 1.52999 * 109.47428 * 99.53600 * 18 9 7 20 20 C 1.50692 * 109.47255 * 180.02562 * 19 18 9 21 21 O 1.20818 * 120.00258 * 359.97438 * 20 19 18 22 22 O 1.34235 * 119.99980 * 180.02562 * 20 19 18 23 23 C 1.39650 * 119.70238 * 359.70615 * 6 5 4 24 24 C 1.37936 * 119.84431 * 359.97438 * 23 6 5 25 25 H 1.08994 * 109.47063 * 299.99932 * 1 2 3 26 26 H 1.09005 * 109.46507 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46999 * 60.00263 * 1 2 3 28 28 H 1.08994 * 109.46995 * 119.99961 * 2 1 3 29 29 H 1.08994 * 109.47063 * 240.00067 * 2 1 3 30 30 H 1.08007 * 119.92096 * 0.02562 * 4 3 2 31 31 H 1.08002 * 120.07770 * 180.25278 * 5 4 3 32 32 H 0.96994 * 120.00459 * 184.93557 * 13 12 10 33 33 H 1.09000 * 109.47176 * 219.54454 * 18 9 7 34 34 H 1.09007 * 109.46660 * 339.53901 * 18 9 7 35 35 H 1.09000 * 109.47132 * 300.00716 * 19 18 9 36 36 H 1.09000 * 109.46747 * 59.99831 * 19 18 9 37 37 H 0.96691 * 117.00080 * 179.97438 * 22 20 19 38 38 H 1.07996 * 120.07892 * 179.97438 * 23 6 5 39 39 H 1.07994 * 119.92638 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2672 2.0683 -1.2002 5 6 2.7215 3.3707 -1.2076 6 6 2.9557 4.0318 -0.0001 7 6 3.4490 5.4243 0.0000 8 8 3.1746 6.1665 0.9231 9 7 4.2033 5.8720 -1.0234 10 6 4.7767 7.1131 -0.9589 11 1 4.8018 7.7425 -1.8362 12 6 5.3271 7.5636 0.2359 13 7 5.6664 6.7029 1.1685 14 14 5.5838 9.3926 0.5150 15 1 5.1235 10.1451 -0.6797 16 1 4.8059 9.8260 1.7034 17 1 7.0264 9.6610 0.7429 18 6 4.4093 5.0303 -2.2046 19 6 3.4595 5.4740 -3.3190 20 6 3.6710 4.6078 -4.5338 21 8 4.4970 3.7263 -4.5109 22 8 2.9424 4.8162 -5.6418 23 6 2.7220 3.3705 1.2075 24 6 2.2614 2.0703 1.2002 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 2.0899 1.5542 -2.1334 31 1 2.9006 3.8762 -2.1451 32 1 5.9832 7.0197 2.0288 33 1 5.4401 5.1282 -2.5452 34 1 4.2084 3.9899 -1.9488 35 1 2.4287 5.3761 -2.9783 36 1 3.6603 6.5144 -3.5747 37 1 3.1140 4.2355 -6.3957 38 1 2.9014 3.8759 2.1450 39 1 2.0805 1.5576 2.1333 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605803994.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:58 Heat of formation + Delta-G solvation = -70.707920 kcal Electronic energy + Delta-G solvation = -23541.952716 eV Core-core repulsion = 20029.897536 eV Total energy + Delta-G solvation = -3512.055181 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.34661 -39.46425 -37.71659 -36.10796 -34.82577 -33.90911 -32.33636 -30.52496 -30.17607 -29.19407 -25.43417 -24.56895 -23.36871 -22.28548 -21.14460 -20.58293 -19.62865 -18.00738 -17.09491 -16.59638 -16.33980 -15.49609 -15.34020 -15.19063 -14.71525 -14.13859 -13.88498 -13.71866 -13.48703 -13.35259 -13.11330 -12.78783 -12.56243 -12.34854 -11.99076 -11.69059 -11.43651 -11.41675 -11.37309 -11.11413 -10.92868 -10.85356 -10.61823 -10.58964 -10.42564 -10.26877 -9.96425 -8.88078 -8.44073 -8.30357 -8.04092 -7.28328 -6.20436 -3.92978 1.54116 1.82157 2.34518 3.14527 3.29209 3.38669 3.40338 3.88233 4.23775 4.63622 4.87748 4.96858 4.99690 5.12090 5.27939 5.31461 5.36404 5.40653 5.42277 5.56624 5.61035 5.76028 5.81728 5.85718 5.90764 5.97852 6.12599 6.17699 6.24187 6.39624 6.46040 6.52676 6.68327 6.79501 6.92925 7.00994 7.38523 7.53655 8.00020 8.15455 8.94043 9.08562 9.53060 10.18212 10.87769 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.012476 B = 0.006258 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.683324 B = 4473.031977 C = 6372.945972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.087 4.087 4 C -0.127 4.127 5 C -0.131 4.131 6 C -0.098 4.098 7 C 0.512 3.488 8 O -0.534 6.534 9 N -0.440 5.440 10 C -0.348 4.348 11 H 0.084 0.916 12 C 0.072 3.928 13 N -0.827 5.827 14 Si 0.911 3.089 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.286 1.286 18 C 0.080 3.920 19 C -0.137 4.137 20 C 0.481 3.519 21 O -0.514 6.514 22 O -0.520 6.520 23 C -0.069 4.069 24 C -0.127 4.127 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.116 0.884 31 H 0.149 0.851 32 H 0.267 0.733 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.404 0.596 38 H 0.129 0.871 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.275 -10.056 -7.563 14.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.087 4.087 4 C -0.145 4.145 5 C -0.149 4.149 6 C -0.102 4.102 7 C 0.301 3.699 8 O -0.413 6.413 9 N -0.160 5.160 10 C -0.474 4.474 11 H 0.101 0.899 12 C -0.139 4.139 13 N -0.460 5.460 14 Si 0.737 3.263 15 H -0.194 1.194 16 H -0.205 1.205 17 H -0.212 1.212 18 C -0.044 4.044 19 C -0.176 4.176 20 C 0.323 3.677 21 O -0.402 6.402 22 O -0.332 6.332 23 C -0.088 4.088 24 C -0.145 4.145 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.134 0.866 31 H 0.166 0.834 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.134 0.866 37 H 0.263 0.737 38 H 0.147 0.853 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.097 -9.648 -6.563 13.658 hybrid contribution 0.393 0.438 -0.345 0.683 sum -6.704 -9.210 -6.908 13.323 Atomic orbital electron populations 1.21747 0.95021 1.01227 1.02306 1.20512 0.95944 0.93054 1.02474 1.19895 0.99589 0.95890 0.93330 1.20881 1.01290 0.95196 0.97154 1.22295 0.98301 0.95359 0.98917 1.20509 1.00186 0.96062 0.93419 1.17799 0.81047 0.85929 0.85156 1.90592 1.58128 1.56994 1.35538 1.43115 1.43387 1.15224 1.14324 1.19058 1.37976 0.91425 0.98978 0.89872 1.25195 0.93199 0.98916 0.96633 1.69866 1.36101 1.34899 1.05136 0.86181 0.77250 0.84071 0.78765 1.19433 1.20530 1.21191 1.22254 0.98424 0.97088 0.86672 1.22016 1.04118 1.00941 0.90542 1.23716 0.77205 0.82737 0.84023 1.90719 1.33633 1.32628 1.83246 1.84587 1.62584 1.61220 1.24803 1.21230 0.95867 0.93646 0.98080 1.20897 1.01455 0.94966 0.97194 0.92540 0.92772 0.92587 0.91298 0.91315 0.86569 0.83437 0.92300 0.90625 0.87943 0.87595 0.86580 0.73749 0.85348 0.86382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.89 37.16 0.37 -1.07 16 2 C -0.08 -0.91 6.06 -27.88 -0.17 -1.08 16 3 C -0.09 -1.26 5.14 -104.52 -0.54 -1.80 16 4 C -0.13 -1.96 9.68 -39.64 -0.38 -2.34 16 5 C -0.13 -2.35 7.53 -39.17 -0.29 -2.64 16 6 C -0.10 -2.10 5.62 -104.97 -0.59 -2.69 16 7 C 0.51 13.22 6.61 -12.38 -0.08 13.14 16 8 O -0.53 -15.82 14.55 5.29 0.08 -15.74 16 9 N -0.44 -10.87 2.55 -115.93 -0.30 -11.17 16 10 C -0.35 -9.31 9.17 -15.00 -0.14 -9.45 16 11 H 0.08 2.09 7.91 -52.49 -0.42 1.67 16 12 C 0.07 1.99 4.31 -17.45 -0.08 1.92 16 13 N -0.83 -24.35 11.75 55.50 0.65 -23.70 16 14 Si 0.91 21.54 29.60 -169.99 -5.03 16.51 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 17 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 18 C 0.08 1.59 4.14 -4.04 -0.02 1.57 16 19 C -0.14 -2.17 5.14 -27.89 -0.14 -2.32 16 20 C 0.48 6.86 8.11 36.00 0.29 7.16 16 21 O -0.51 -8.63 16.74 -18.74 -0.31 -8.95 16 22 O -0.52 -5.74 13.42 -39.27 -0.53 -6.27 16 23 C -0.07 -1.36 9.60 -39.17 -0.38 -1.74 16 24 C -0.13 -2.03 9.68 -39.64 -0.38 -2.41 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 29 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 30 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 31 H 0.15 2.50 2.47 -52.49 -0.13 2.37 16 32 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.08 1.56 8.07 -51.93 -0.42 1.14 16 34 H 0.10 2.00 3.77 -55.20 -0.21 1.79 16 35 H 0.11 1.59 7.24 -51.93 -0.38 1.21 16 36 H 0.12 1.81 8.14 -51.93 -0.42 1.38 16 37 H 0.40 2.59 9.10 45.56 0.41 3.01 16 38 H 0.13 2.66 7.91 -52.49 -0.41 2.24 16 39 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 330.23 15.07 4.98 4.98 Total: -1.00 -34.27 330.23 -7.05 -41.33 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -4.06 Total: 6.78 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -2.53 Total: -3.76 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.36 Total: -34.87 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -0.76 Total: -30.96 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.27 -7.05 -41.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605803994.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.381 kcal (2) G-P(sol) polarization free energy of solvation -34.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds