Wall clock time and date at job start Tue Mar 31 2020 06:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50703 * 109.46507 * 2 1 4 4 C 1.38381 * 119.84748 * 269.72350 * 3 2 1 5 5 C 1.37932 * 120.15192 * 179.72705 * 4 3 2 6 6 C 1.39647 * 119.84302 * 0.57091 * 5 4 3 7 7 C 1.47727 * 120.14936 * 179.68157 * 6 5 4 8 8 O 1.21591 * 120.00066 * 151.25036 * 7 6 5 9 9 N 1.34781 * 120.00012 * 331.24872 * 7 6 5 10 10 C 1.36867 * 119.99760 * 186.86095 * 9 7 6 11 11 H 1.08002 * 119.99765 * 220.14174 * 10 9 7 12 12 C 1.39047 * 120.00594 * 40.14355 * 10 9 7 13 13 N 1.31361 * 120.00035 * 20.49505 * 12 10 9 14 14 Si 1.86798 * 120.00205 * 200.50349 * 12 10 9 15 15 H 1.48505 * 109.47338 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47314 * 119.99688 * 14 12 10 17 17 H 1.48494 * 109.47205 * 239.99839 * 14 12 10 18 18 C 1.46497 * 120.00081 * 6.86048 * 9 7 6 19 19 C 1.52999 * 109.47428 * 99.53600 * 18 9 7 20 20 C 1.50692 * 109.47255 * 180.02562 * 19 18 9 21 21 O 1.20818 * 120.00258 * 359.97438 * 20 19 18 22 22 O 1.34235 * 119.99980 * 180.02562 * 20 19 18 23 23 C 1.39650 * 119.70238 * 359.70615 * 6 5 4 24 24 C 1.37936 * 119.84431 * 359.97438 * 23 6 5 25 25 H 1.08994 * 109.47063 * 299.99932 * 1 2 3 26 26 H 1.09005 * 109.46507 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46999 * 60.00263 * 1 2 3 28 28 H 1.08994 * 109.46995 * 119.99961 * 2 1 3 29 29 H 1.08994 * 109.47063 * 240.00067 * 2 1 3 30 30 H 1.08007 * 119.92096 * 0.02562 * 4 3 2 31 31 H 1.08002 * 120.07770 * 180.25278 * 5 4 3 32 32 H 0.96994 * 120.00459 * 184.93557 * 13 12 10 33 33 H 1.09000 * 109.47176 * 219.54454 * 18 9 7 34 34 H 1.09007 * 109.46660 * 339.53901 * 18 9 7 35 35 H 1.09000 * 109.47132 * 300.00716 * 19 18 9 36 36 H 1.09000 * 109.46747 * 59.99831 * 19 18 9 37 37 H 0.96691 * 117.00080 * 179.97438 * 22 20 19 38 38 H 1.07996 * 120.07892 * 179.97438 * 23 6 5 39 39 H 1.07994 * 119.92638 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2672 2.0683 -1.2002 5 6 2.7215 3.3707 -1.2076 6 6 2.9557 4.0318 -0.0001 7 6 3.4490 5.4243 0.0000 8 8 3.1746 6.1665 0.9231 9 7 4.2033 5.8720 -1.0234 10 6 4.7767 7.1131 -0.9589 11 1 4.8018 7.7425 -1.8362 12 6 5.3271 7.5636 0.2359 13 7 5.6664 6.7029 1.1685 14 14 5.5838 9.3926 0.5150 15 1 5.1235 10.1451 -0.6797 16 1 4.8059 9.8260 1.7034 17 1 7.0264 9.6610 0.7429 18 6 4.4093 5.0303 -2.2046 19 6 3.4595 5.4740 -3.3190 20 6 3.6710 4.6078 -4.5338 21 8 4.4970 3.7263 -4.5109 22 8 2.9424 4.8162 -5.6418 23 6 2.7220 3.3705 1.2075 24 6 2.2614 2.0703 1.2002 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 2.0899 1.5542 -2.1334 31 1 2.9006 3.8762 -2.1451 32 1 5.9832 7.0197 2.0288 33 1 5.4401 5.1282 -2.5452 34 1 4.2084 3.9899 -1.9488 35 1 2.4287 5.3761 -2.9783 36 1 3.6603 6.5144 -3.5747 37 1 3.1140 4.2355 -6.3957 38 1 2.9014 3.8759 2.1450 39 1 2.0805 1.5576 2.1333 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605803994.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:57 Heat of formation + Delta-G solvation = -93.051476 kcal Electronic energy + Delta-G solvation = -23542.921606 eV Core-core repulsion = 20029.897536 eV Total energy + Delta-G solvation = -3513.024070 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.68586 -40.84302 -39.30256 -37.25910 -36.57369 -35.19526 -34.09915 -32.11489 -31.63391 -30.47714 -27.23193 -25.99681 -24.69876 -23.68621 -22.40138 -21.85132 -21.31677 -19.15222 -18.90180 -18.00808 -17.64955 -17.01276 -16.87573 -16.55112 -16.25409 -15.74658 -15.37882 -15.23688 -14.90365 -14.54525 -14.26856 -14.12839 -13.96386 -13.69217 -13.41425 -13.31630 -12.95861 -12.89166 -12.80427 -12.52852 -12.46315 -12.21904 -12.10113 -11.96809 -11.73015 -11.63643 -11.41808 -10.89764 -10.23503 -9.81571 -9.49850 -9.29516 -8.28092 -6.03975 0.11929 0.45623 1.20729 1.38007 1.44895 1.53727 2.01997 2.22052 2.43925 2.88553 3.20859 3.26972 3.81851 3.85515 3.89299 3.96799 4.04620 4.12836 4.35878 4.43228 4.52028 4.58174 4.60720 4.64670 4.71672 4.76424 5.02604 5.07448 5.09020 5.14026 5.18864 5.40997 5.43764 5.46193 5.57856 5.63258 5.67711 6.04403 6.13180 6.92751 7.03687 7.12592 7.54056 8.22786 8.80673 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.012476 B = 0.006258 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.683324 B = 4473.031977 C = 6372.945972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 C -0.070 4.070 4 C -0.123 4.123 5 C -0.129 4.129 6 C -0.136 4.136 7 C 0.502 3.498 8 O -0.590 6.590 9 N -0.453 5.453 10 C -0.362 4.362 11 H 0.096 0.904 12 C 0.017 3.983 13 N -0.872 5.872 14 Si 0.973 3.027 15 H -0.250 1.250 16 H -0.295 1.295 17 H -0.276 1.276 18 C 0.082 3.918 19 C -0.131 4.131 20 C 0.499 3.501 21 O -0.541 6.541 22 O -0.507 6.507 23 C -0.090 4.090 24 C -0.122 4.122 25 H 0.049 0.951 26 H 0.076 0.924 27 H 0.053 0.947 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.152 0.848 31 H 0.156 0.844 32 H 0.261 0.739 33 H 0.062 0.938 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.429 0.571 38 H 0.101 0.899 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.672 -12.238 -9.942 17.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 C -0.071 4.071 4 C -0.140 4.140 5 C -0.147 4.147 6 C -0.139 4.139 7 C 0.292 3.708 8 O -0.472 6.472 9 N -0.172 5.172 10 C -0.489 4.489 11 H 0.114 0.886 12 C -0.189 4.189 13 N -0.507 5.507 14 Si 0.797 3.203 15 H -0.173 1.173 16 H -0.221 1.221 17 H -0.202 1.202 18 C -0.041 4.041 19 C -0.169 4.169 20 C 0.342 3.658 21 O -0.431 6.431 22 O -0.321 6.321 23 C -0.110 4.110 24 C -0.140 4.140 25 H 0.068 0.932 26 H 0.095 0.905 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.170 0.830 31 H 0.173 0.827 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.126 0.874 35 H 0.134 0.866 36 H 0.138 0.862 37 H 0.292 0.708 38 H 0.119 0.881 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.496 -11.845 -9.031 17.148 hybrid contribution 0.725 0.955 0.297 1.236 sum -7.771 -10.890 -8.734 15.977 Atomic orbital electron populations 1.21744 0.93864 1.02643 1.01942 1.20628 0.96736 0.90259 1.04195 1.20408 0.96798 0.97590 0.92276 1.21289 0.99678 0.93969 0.99087 1.22338 0.98175 0.96477 0.97688 1.20269 1.03532 0.94497 0.95595 1.18557 0.80376 0.87480 0.84349 1.90524 1.60351 1.58921 1.37450 1.43297 1.42891 1.15412 1.15630 1.19490 1.37125 0.92948 0.99327 0.88638 1.26137 0.93165 1.02968 0.96624 1.69984 1.38462 1.36753 1.05487 0.85220 0.77300 0.79213 0.78520 1.17288 1.22149 1.20159 1.22295 0.98856 0.96870 0.86079 1.21735 1.03391 1.01443 0.90350 1.23061 0.76837 0.81683 0.84263 1.90727 1.34857 1.33697 1.83820 1.84506 1.61290 1.61603 1.24693 1.21192 0.97674 0.95490 0.96622 1.21166 1.00174 0.93262 0.99380 0.93219 0.90533 0.92738 0.89888 0.89433 0.82995 0.82703 0.92968 0.91998 0.87368 0.86555 0.86240 0.70847 0.88054 0.83580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.89 71.98 0.71 -1.51 16 2 C -0.08 -1.41 6.06 29.85 0.18 -1.23 16 3 C -0.07 -1.83 5.14 -19.80 -0.10 -1.93 16 4 C -0.12 -3.39 9.68 22.23 0.22 -3.17 16 5 C -0.13 -4.51 7.53 22.54 0.17 -4.34 16 6 C -0.14 -6.01 5.62 -20.09 -0.11 -6.12 16 7 C 0.50 27.31 6.61 86.75 0.57 27.89 16 8 O -0.59 -37.34 14.55 -4.00 -0.06 -37.39 16 9 N -0.45 -23.19 2.55 -638.94 -1.63 -24.83 16 10 C -0.36 -19.98 9.17 84.10 0.77 -19.21 16 11 H 0.10 4.85 7.91 -2.91 -0.02 4.83 16 12 C 0.02 1.00 4.31 84.96 0.37 1.36 16 13 N -0.87 -54.25 11.75 21.68 0.25 -54.00 16 14 Si 0.97 45.70 29.60 68.60 2.03 47.74 16 15 H -0.25 -10.74 7.11 99.48 0.71 -10.03 16 16 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16 17 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 18 C 0.08 3.30 4.14 86.38 0.36 3.66 16 19 C -0.13 -3.99 5.14 29.85 0.15 -3.84 16 20 C 0.50 13.02 8.11 71.23 0.58 13.60 16 21 O -0.54 -17.03 16.74 21.99 0.37 -16.66 16 22 O -0.51 -9.37 13.42 -51.47 -0.69 -10.06 16 23 C -0.09 -3.71 9.60 22.54 0.22 -3.49 16 24 C -0.12 -3.73 9.68 22.23 0.22 -3.52 16 25 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 1.28 8.08 -2.39 -0.02 1.26 16 29 H 0.09 1.28 8.08 -2.39 -0.02 1.26 16 30 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 31 H 0.16 5.07 2.47 -2.91 -0.01 5.07 16 32 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 33 H 0.06 2.62 8.07 -2.39 -0.02 2.60 16 34 H 0.11 4.23 3.77 -5.46 -0.02 4.21 16 35 H 0.12 3.33 7.24 -2.39 -0.02 3.32 16 36 H 0.12 3.59 8.14 -2.39 -0.02 3.57 16 37 H 0.43 3.74 9.10 -74.06 -0.67 3.07 16 38 H 0.10 4.58 7.91 -2.91 -0.02 4.56 16 39 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -79.64 330.23 4.97 -74.67 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.40 Total: 22.39 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: 4.29 Total: -1.85 kcal Atomic # 7 Polarization: -77.45 SS G_CDS: -1.38 Total: -78.82 kcal Atomic # 8 Polarization: -63.74 SS G_CDS: -0.38 Total: -64.12 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.74 kcal Total: -79.64 4.97 -74.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605803994.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.385 kcal (2) G-P(sol) polarization free energy of solvation -79.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds