Wall clock time and date at job start Tue Mar 31 2020 06:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50702 * 109.46775 * 2 1 4 4 C 1.38579 * 119.83290 * 90.00039 * 3 2 1 5 5 C 1.38020 * 120.42133 * 180.02562 * 4 3 2 6 6 C 1.38846 * 120.07143 * 0.02562 * 5 4 3 7 7 N 1.39258 * 120.16837 * 179.97438 * 6 5 4 8 8 C 1.34780 * 119.99672 * 317.67068 * 7 6 5 9 9 O 1.21273 * 120.00107 * 4.55244 * 8 7 6 10 10 C 1.50694 * 119.99795 * 184.55013 * 8 7 6 11 11 C 1.52998 * 109.47179 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47362 * 179.97438 * 11 10 8 13 13 H 1.08005 * 119.99794 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00355 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99599 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00341 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47121 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47374 * 120.00102 * 16 14 12 19 19 H 1.48502 * 109.47471 * 240.00534 * 16 14 12 20 20 C 1.40326 * 119.66752 * 359.97438 * 6 5 4 21 21 C 1.47379 * 120.20812 * 180.02562 * 20 6 5 22 22 O 1.21507 * 119.99835 * 5.37527 * 21 20 6 23 23 O 1.34757 * 120.00287 * 185.65328 * 21 20 6 24 24 C 1.37780 * 119.83063 * 270.25359 * 3 2 1 25 25 H 1.09001 * 109.46854 * 60.00296 * 1 2 3 26 26 H 1.08999 * 109.46978 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47282 * 299.99760 * 1 2 3 28 28 H 1.08994 * 109.47282 * 240.00240 * 2 1 3 29 29 H 1.08994 * 109.47217 * 119.99754 * 2 1 3 30 30 H 1.08004 * 119.78703 * 359.97438 * 4 3 2 31 31 H 1.07996 * 119.96035 * 179.97438 * 5 4 3 32 32 H 0.97000 * 120.00150 * 137.67075 * 7 6 5 33 33 H 1.09004 * 109.47509 * 300.00356 * 10 8 7 34 34 H 1.09001 * 109.47311 * 60.00420 * 10 8 7 35 35 H 1.08999 * 109.47190 * 299.99728 * 11 10 8 36 36 H 1.09002 * 109.47233 * 60.00270 * 11 10 8 37 37 H 0.96996 * 119.99726 * 179.97438 * 15 14 12 38 38 H 0.96701 * 117.00497 * 179.97438 * 23 21 20 39 39 H 1.08001 * 120.04265 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2621 2.0708 1.2021 5 6 2.7216 3.3722 1.2163 6 6 2.9565 4.0402 0.0220 7 7 3.4196 5.3534 0.0339 8 6 2.9003 6.2432 0.9029 9 8 2.0898 5.8815 1.7294 10 6 3.3268 7.6874 0.8477 11 6 2.5942 8.4775 1.9339 12 6 3.0212 9.9217 1.8791 13 1 3.7428 10.2439 1.1428 14 6 2.4901 10.8319 2.7682 15 7 1.6112 10.4397 3.6644 16 14 3.0200 12.6219 2.7007 17 1 4.0120 12.8037 1.6107 18 1 1.8359 13.4792 2.4397 19 1 3.6330 13.0060 3.9976 20 6 2.7250 3.3852 -1.1973 21 6 2.9709 4.0827 -2.4721 22 8 3.4670 5.1918 -2.4719 23 8 2.6404 3.4927 -3.6377 24 6 2.2558 2.0688 -1.1952 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 2.0797 1.5560 2.1339 31 1 2.8977 3.8718 2.1575 32 1 4.1159 5.6278 -0.5832 33 1 4.4022 7.7553 1.0124 34 1 3.0823 8.1014 -0.1305 35 1 1.5188 8.4098 1.7696 36 1 2.8391 8.0635 2.9121 37 1 1.2378 11.0799 4.2901 38 1 2.8204 3.9892 -4.4477 39 1 2.0708 1.5593 -2.1293 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605819104.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:34 Heat of formation + Delta-G solvation = -119.002759 kcal Electronic energy + Delta-G solvation = -22484.508673 eV Core-core repulsion = 18970.359271 eV Total energy + Delta-G solvation = -3514.149402 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.99266 -39.61262 -38.58325 -36.38427 -35.13457 -33.49347 -33.06931 -31.55209 -31.01571 -28.75581 -25.91672 -24.71570 -23.94594 -22.56650 -21.68088 -20.41474 -19.69860 -18.25002 -17.58325 -17.02704 -16.84913 -15.96057 -15.85261 -15.38330 -14.90300 -14.67904 -14.46151 -14.21717 -13.89874 -13.66073 -13.31742 -13.26159 -12.73878 -12.51582 -12.19694 -12.05274 -11.88785 -11.71180 -11.43551 -11.19777 -11.12049 -10.94841 -10.71884 -10.58324 -9.99018 -9.95069 -9.70978 -9.32379 -9.13536 -9.05240 -8.33418 -8.13020 -5.96692 -4.00826 0.53312 1.18956 2.40180 2.83517 3.03408 3.33028 3.33046 3.40519 3.44446 3.66906 4.47018 4.47731 4.62257 4.82647 4.90647 5.10835 5.13282 5.23041 5.36614 5.37359 5.38574 5.56697 5.64545 5.71430 5.82869 5.98059 6.03718 6.14915 6.18824 6.24295 6.27839 6.38977 6.50771 6.85891 6.91452 7.67949 7.72456 7.74440 7.83391 8.05224 8.36331 8.58682 9.07151 9.62804 11.14342 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.022315 B = 0.003349 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.477769 B = 8357.542195 C = 9286.236469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.079 4.079 3 C -0.122 4.122 4 C -0.059 4.059 5 C -0.129 4.129 6 C 0.224 3.776 7 N -0.679 5.679 8 C 0.512 3.488 9 O -0.515 6.515 10 C -0.128 4.128 11 C 0.037 3.963 12 C -0.526 4.526 13 H 0.057 0.943 14 C 0.058 3.942 15 N -0.890 5.890 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.166 4.166 21 C 0.532 3.468 22 O -0.513 6.513 23 O -0.513 6.513 24 C -0.042 4.042 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.131 0.869 31 H 0.145 0.855 32 H 0.420 0.580 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.024 0.976 36 H 0.025 0.975 37 H 0.260 0.740 38 H 0.414 0.586 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.485 -22.174 -12.006 25.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.123 4.123 4 C -0.077 4.077 5 C -0.149 4.149 6 C 0.126 3.874 7 N -0.329 5.329 8 C 0.302 3.698 9 O -0.389 6.389 10 C -0.168 4.168 11 C -0.001 4.001 12 C -0.564 4.564 13 H 0.075 0.925 14 C -0.144 4.144 15 N -0.528 5.528 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.170 4.170 21 C 0.377 3.623 22 O -0.403 6.403 23 O -0.325 6.325 24 C -0.061 4.061 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.149 0.851 31 H 0.163 0.837 32 H 0.261 0.739 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.272 0.728 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.852 -22.160 -10.900 24.765 hybrid contribution 0.642 1.541 -0.886 1.890 sum 2.495 -20.619 -11.786 23.881 Atomic orbital electron populations 1.21787 0.94737 1.01644 1.02539 1.20482 0.96187 0.92061 1.02893 1.19802 1.02650 0.97144 0.92696 1.21210 0.94841 0.93764 0.97922 1.21255 1.01729 0.94101 0.97835 1.17763 0.92987 0.84776 0.91835 1.44165 1.41167 1.07377 1.40175 1.21917 0.80009 0.89010 0.78850 1.90679 1.32537 1.80265 1.35388 1.21908 1.02531 0.88057 1.04259 1.18929 0.95766 0.93136 0.92247 1.21247 1.25059 0.93397 1.16741 0.92460 1.25025 0.95060 0.98920 0.95406 1.70007 1.29187 1.34529 1.19124 0.86520 0.78440 0.85059 0.77862 1.19719 1.21018 1.21001 1.18870 1.12413 0.96793 0.88973 1.20720 0.74199 0.83321 0.84046 1.90811 1.41736 1.20136 1.87624 1.84549 1.78846 1.52019 1.17059 1.21075 0.94338 0.92215 0.98488 0.92482 0.92445 0.92345 0.91002 0.90898 0.85084 0.83717 0.73918 0.89761 0.89619 0.95744 0.95696 0.93001 0.72783 0.84484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.90 37.16 0.37 -0.70 16 2 C -0.08 -0.56 6.05 -27.88 -0.17 -0.73 16 3 C -0.12 -1.21 5.13 -104.66 -0.54 -1.75 16 4 C -0.06 -0.65 9.68 -39.54 -0.38 -1.04 16 5 C -0.13 -1.85 8.66 -39.44 -0.34 -2.19 16 6 C 0.22 3.38 6.16 -83.48 -0.51 2.87 16 7 N -0.68 -11.12 4.45 -9.68 -0.04 -11.16 16 8 C 0.51 10.24 7.64 -10.99 -0.08 10.16 16 9 O -0.52 -11.92 13.90 5.56 0.08 -11.84 16 10 C -0.13 -2.69 5.64 -27.89 -0.16 -2.84 16 11 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 12 C -0.53 -15.08 9.11 -34.44 -0.31 -15.40 16 13 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -27.51 13.29 55.43 0.74 -26.77 16 16 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 20 C -0.17 -2.16 5.89 -104.83 -0.62 -2.78 16 21 C 0.53 6.63 8.25 34.45 0.28 6.91 16 22 O -0.51 -7.58 14.82 -19.27 -0.29 -7.87 16 23 O -0.51 -4.50 12.69 -40.65 -0.52 -5.01 16 24 C -0.04 -0.45 9.25 -39.18 -0.36 -0.81 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 29 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 30 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 31 H 0.15 2.29 6.78 -52.49 -0.36 1.93 16 32 H 0.42 6.26 6.73 -40.82 -0.27 5.98 16 33 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 34 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 35 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 36 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.41 1.81 9.11 45.56 0.42 2.22 16 39 H 0.14 1.16 7.62 -52.49 -0.40 0.76 16 LS Contribution 338.51 15.07 5.10 5.10 Total: -1.00 -35.15 338.51 -7.37 -42.51 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -4.37 Total: 4.02 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -3.04 Total: -5.83 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.69 Total: -37.94 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.72 Total: -24.72 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.15 -7.37 -42.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605819104.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.489 kcal (2) G-P(sol) polarization free energy of solvation -35.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds