Wall clock time and date at job start Tue Mar 31 2020 06:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50702 * 109.46775 * 2 1 4 4 C 1.38579 * 119.83290 * 90.00039 * 3 2 1 5 5 C 1.38020 * 120.42133 * 180.02562 * 4 3 2 6 6 C 1.38846 * 120.07143 * 0.02562 * 5 4 3 7 7 N 1.39258 * 120.16837 * 179.97438 * 6 5 4 8 8 C 1.34780 * 119.99672 * 317.67068 * 7 6 5 9 9 O 1.21273 * 120.00107 * 4.55244 * 8 7 6 10 10 C 1.50694 * 119.99795 * 184.55013 * 8 7 6 11 11 C 1.52998 * 109.47179 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47362 * 179.97438 * 11 10 8 13 13 H 1.08005 * 119.99794 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00355 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99599 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00341 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47121 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47374 * 120.00102 * 16 14 12 19 19 H 1.48502 * 109.47471 * 240.00534 * 16 14 12 20 20 C 1.40326 * 119.66752 * 359.97438 * 6 5 4 21 21 C 1.47379 * 120.20812 * 180.02562 * 20 6 5 22 22 O 1.21507 * 119.99835 * 5.37527 * 21 20 6 23 23 O 1.34757 * 120.00287 * 185.65328 * 21 20 6 24 24 C 1.37780 * 119.83063 * 270.25359 * 3 2 1 25 25 H 1.09001 * 109.46854 * 60.00296 * 1 2 3 26 26 H 1.08999 * 109.46978 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47282 * 299.99760 * 1 2 3 28 28 H 1.08994 * 109.47282 * 240.00240 * 2 1 3 29 29 H 1.08994 * 109.47217 * 119.99754 * 2 1 3 30 30 H 1.08004 * 119.78703 * 359.97438 * 4 3 2 31 31 H 1.07996 * 119.96035 * 179.97438 * 5 4 3 32 32 H 0.97000 * 120.00150 * 137.67075 * 7 6 5 33 33 H 1.09004 * 109.47509 * 300.00356 * 10 8 7 34 34 H 1.09001 * 109.47311 * 60.00420 * 10 8 7 35 35 H 1.08999 * 109.47190 * 299.99728 * 11 10 8 36 36 H 1.09002 * 109.47233 * 60.00270 * 11 10 8 37 37 H 0.96996 * 119.99726 * 179.97438 * 15 14 12 38 38 H 0.96701 * 117.00497 * 179.97438 * 23 21 20 39 39 H 1.08001 * 120.04265 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2621 2.0708 1.2021 5 6 2.7216 3.3722 1.2163 6 6 2.9565 4.0402 0.0220 7 7 3.4196 5.3534 0.0339 8 6 2.9003 6.2432 0.9029 9 8 2.0898 5.8815 1.7294 10 6 3.3268 7.6874 0.8477 11 6 2.5942 8.4775 1.9339 12 6 3.0212 9.9217 1.8791 13 1 3.7428 10.2439 1.1428 14 6 2.4901 10.8319 2.7682 15 7 1.6112 10.4397 3.6644 16 14 3.0200 12.6219 2.7007 17 1 4.0120 12.8037 1.6107 18 1 1.8359 13.4792 2.4397 19 1 3.6330 13.0060 3.9976 20 6 2.7250 3.3852 -1.1973 21 6 2.9709 4.0827 -2.4721 22 8 3.4670 5.1918 -2.4719 23 8 2.6404 3.4927 -3.6377 24 6 2.2558 2.0688 -1.1952 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 2.0797 1.5560 2.1339 31 1 2.8977 3.8718 2.1575 32 1 4.1159 5.6278 -0.5832 33 1 4.4022 7.7553 1.0124 34 1 3.0823 8.1014 -0.1305 35 1 1.5188 8.4098 1.7696 36 1 2.8391 8.0635 2.9121 37 1 1.2378 11.0799 4.2901 38 1 2.8204 3.9892 -4.4477 39 1 2.0708 1.5593 -2.1293 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605819104.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:33 Heat of formation + Delta-G solvation = -142.474596 kcal Electronic energy + Delta-G solvation = -22485.526488 eV Core-core repulsion = 18970.359271 eV Total energy + Delta-G solvation = -3515.167217 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.09154 -40.80774 -39.68483 -37.30897 -36.27207 -35.59492 -34.09399 -32.99441 -32.47719 -29.80696 -27.76676 -25.74903 -25.02823 -23.61217 -23.24939 -21.35123 -21.25723 -19.13424 -18.92819 -18.69818 -17.80908 -17.64553 -17.02346 -16.57273 -16.48890 -15.98663 -15.73575 -15.38645 -14.85693 -14.63201 -14.60120 -14.27373 -14.15593 -14.00788 -13.59522 -13.29366 -13.01529 -12.86423 -12.69865 -12.59343 -12.47556 -12.16372 -11.99267 -11.78761 -11.69634 -11.64092 -11.32666 -11.13691 -10.85209 -10.59272 -10.14105 -9.22899 -8.20397 -6.34256 -0.44724 0.20227 1.40859 1.42287 1.45214 1.51445 1.55839 1.99484 2.02837 2.41999 2.66993 3.12638 3.64214 3.79359 3.84900 3.99445 4.17251 4.27725 4.41791 4.44076 4.45937 4.52102 4.58848 4.74070 4.85859 4.97517 5.05369 5.12531 5.16227 5.22420 5.37935 5.46075 5.48285 5.53327 5.56637 5.57903 5.81103 5.85048 6.14643 6.34657 6.82577 6.91291 7.09564 7.35674 8.92456 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.022315 B = 0.003349 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.477769 B = 8357.542195 C = 9286.236469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.076 4.076 3 C -0.109 4.109 4 C -0.057 4.057 5 C -0.148 4.148 6 C 0.186 3.814 7 N -0.663 5.663 8 C 0.515 3.485 9 O -0.558 6.558 10 C -0.117 4.117 11 C 0.045 3.955 12 C -0.544 4.544 13 H 0.073 0.927 14 C -0.006 4.006 15 N -0.935 5.935 16 Si 0.975 3.025 17 H -0.255 1.255 18 H -0.280 1.280 19 H -0.278 1.278 20 C -0.171 4.171 21 C 0.535 3.465 22 O -0.543 6.543 23 O -0.498 6.498 24 C -0.034 4.034 25 H 0.052 0.948 26 H 0.074 0.926 27 H 0.045 0.955 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.153 0.847 31 H 0.119 0.881 32 H 0.426 0.574 33 H 0.108 0.892 34 H 0.100 0.900 35 H -0.016 1.016 36 H -0.011 1.011 37 H 0.264 0.736 38 H 0.435 0.565 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.199 -23.613 -14.217 27.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 C -0.110 4.110 4 C -0.075 4.075 5 C -0.168 4.168 6 C 0.090 3.910 7 N -0.313 5.313 8 C 0.305 3.695 9 O -0.435 6.435 10 C -0.157 4.157 11 C 0.007 3.993 12 C -0.582 4.582 13 H 0.092 0.908 14 C -0.203 4.203 15 N -0.575 5.575 16 Si 0.798 3.202 17 H -0.179 1.179 18 H -0.205 1.205 19 H -0.204 1.204 20 C -0.175 4.175 21 C 0.382 3.618 22 O -0.435 6.435 23 O -0.311 6.311 24 C -0.053 4.053 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.064 0.936 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.171 0.829 31 H 0.137 0.863 32 H 0.269 0.731 33 H 0.126 0.874 34 H 0.118 0.882 35 H 0.002 0.998 36 H 0.008 0.992 37 H 0.072 0.928 38 H 0.297 0.703 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 2.593 -23.649 -13.185 27.200 hybrid contribution 0.366 1.787 -0.268 1.844 sum 2.959 -21.862 -13.453 25.839 Atomic orbital electron populations 1.21798 0.94654 1.02598 1.01761 1.20577 0.96040 0.89997 1.04723 1.20202 1.00520 0.98457 0.91803 1.21481 0.93763 0.92535 0.99767 1.21192 1.03302 0.95587 0.96754 1.17984 0.95565 0.84258 0.93191 1.43768 1.40815 1.07764 1.38954 1.21585 0.79696 0.89144 0.79067 1.90660 1.34664 1.80842 1.37356 1.21659 1.03065 0.88393 1.02579 1.18690 0.94002 0.94010 0.92609 1.21707 1.25304 0.94086 1.17110 0.90836 1.26120 0.94873 1.04542 0.94778 1.70175 1.30640 1.36568 1.20151 0.85261 0.78335 0.78111 0.78463 1.17862 1.20545 1.20376 1.19023 1.12266 0.97696 0.88519 1.20645 0.73613 0.82791 0.84798 1.90795 1.43184 1.21378 1.88138 1.84489 1.77931 1.51713 1.17002 1.21437 0.92768 0.91107 0.99969 0.92903 0.90683 0.93550 0.88887 0.89475 0.82905 0.86334 0.73132 0.87352 0.88169 0.99759 0.99227 0.92769 0.70313 0.81609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.90 71.98 0.71 -1.00 16 2 C -0.08 -0.80 6.05 29.85 0.18 -0.62 16 3 C -0.11 -1.89 5.13 -19.89 -0.10 -1.99 16 4 C -0.06 -1.22 9.68 22.30 0.22 -1.01 16 5 C -0.15 -4.40 8.66 22.36 0.19 -4.21 16 6 C 0.19 5.73 6.16 38.62 0.24 5.96 16 7 N -0.66 -22.41 4.45 -302.94 -1.35 -23.75 16 8 C 0.51 21.65 7.64 87.65 0.67 22.31 16 9 O -0.56 -27.70 13.90 -3.01 -0.04 -27.74 16 10 C -0.12 -5.08 5.64 29.85 0.17 -4.91 16 11 C 0.04 2.54 4.26 29.85 0.13 2.67 16 12 C -0.54 -31.76 9.11 25.60 0.23 -31.53 16 13 H 0.07 3.96 7.74 -2.91 -0.02 3.94 16 14 C -0.01 -0.33 5.46 84.65 0.46 0.14 16 15 N -0.94 -59.81 13.29 21.45 0.28 -59.52 16 16 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 17 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 20 C -0.17 -4.25 5.89 -20.00 -0.12 -4.37 16 21 C 0.54 12.51 8.25 70.23 0.58 13.09 16 22 O -0.54 -15.61 14.82 19.81 0.29 -15.32 16 23 O -0.50 -7.26 12.69 -56.67 -0.72 -7.98 16 24 C -0.03 -0.63 9.25 22.53 0.21 -0.42 16 25 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.09 0.66 8.08 -2.39 -0.02 0.64 16 29 H 0.09 0.73 8.08 -2.39 -0.02 0.72 16 30 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 31 H 0.12 4.10 6.78 -2.91 -0.02 4.08 16 32 H 0.43 12.89 6.73 -92.71 -0.62 12.27 16 33 H 0.11 4.12 8.14 -2.39 -0.02 4.10 16 34 H 0.10 4.03 8.14 -2.39 -0.02 4.01 16 35 H -0.02 -1.03 8.10 -2.39 -0.02 -1.05 16 36 H -0.01 -0.68 8.10 -2.39 -0.02 -0.70 16 37 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 38 H 0.43 2.48 9.11 -74.06 -0.67 1.81 16 39 H 0.17 2.09 7.62 -2.91 -0.02 2.07 16 Total: -1.00 -80.06 338.51 4.05 -76.01 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -0.21 Total: 17.05 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 3.77 Total: -5.88 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -1.06 Total: -83.28 kcal Atomic # 8 Polarization: -50.57 SS G_CDS: -0.47 Total: -51.04 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -80.06 4.05 -76.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605819104.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.467 kcal (2) G-P(sol) polarization free energy of solvation -80.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds