Wall clock time and date at job start Tue Mar 31 2020 06:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50705 * 109.47070 * 2 1 4 4 C 1.38062 * 119.96050 * 351.63666 * 3 2 1 5 5 C 1.38535 * 120.41660 * 179.70333 * 4 3 2 6 6 C 1.37819 * 120.33448 * 0.27719 * 5 4 3 7 7 C 1.39705 * 119.91792 * 359.97438 * 6 5 4 8 8 C 1.47384 * 120.20561 * 180.02562 * 7 6 5 9 9 O 1.21520 * 120.00124 * 185.32974 * 8 7 6 10 10 O 1.34757 * 120.00155 * 5.33441 * 8 7 6 11 11 C 1.38803 * 119.96095 * 171.88640 * 3 2 1 12 12 N 1.39257 * 120.16979 * 0.02562 * 11 3 2 13 13 C 1.34772 * 119.99874 * 287.62058 * 12 11 3 14 14 O 1.21280 * 120.00259 * 5.00193 * 13 12 11 15 15 C 1.50701 * 120.00136 * 185.00081 * 13 12 11 16 16 C 1.52996 * 109.47516 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.47516 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99839 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00065 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00170 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00053 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46890 * 59.99909 * 21 19 17 23 23 H 1.48493 * 109.46976 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46808 * 300.00052 * 21 19 17 25 25 H 1.09000 * 109.46891 * 178.70524 * 1 2 3 26 26 H 1.09004 * 109.47073 * 298.71005 * 1 2 3 27 27 H 1.08997 * 109.46981 * 58.70443 * 1 2 3 28 28 H 1.08997 * 109.47080 * 239.99827 * 2 1 3 29 29 H 1.09004 * 109.46616 * 119.99820 * 2 1 3 30 30 H 1.08000 * 119.79474 * 359.97335 * 4 3 2 31 31 H 1.07996 * 119.83392 * 180.28798 * 5 4 3 32 32 H 1.08002 * 120.03771 * 180.02562 * 6 5 4 33 33 H 0.96700 * 117.00347 * 179.97438 * 10 8 7 34 34 H 0.97003 * 120.00054 * 107.62825 * 12 11 3 35 35 H 1.08999 * 109.47296 * 300.00616 * 15 13 12 36 36 H 1.08996 * 109.47195 * 60.00237 * 15 13 12 37 37 H 1.08999 * 109.47194 * 300.00499 * 16 15 13 38 38 H 1.09002 * 109.47279 * 59.99929 * 16 15 13 39 39 H 0.96998 * 120.00368 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 1.1465 2.4654 -0.1740 5 6 1.5971 3.7754 -0.1695 6 6 2.9365 4.0501 0.0032 7 6 3.8459 3.0037 0.1752 8 6 5.2797 3.2903 0.3610 9 8 6.0800 2.3774 0.4132 10 8 5.7031 4.5647 0.4729 11 6 3.3859 1.6776 0.1697 12 7 4.2819 0.6252 0.3396 13 6 4.3012 -0.0630 1.4982 14 8 3.4790 0.1736 2.3579 15 6 5.3443 -1.1266 1.7257 16 6 5.1444 -1.7497 3.1086 17 6 6.1871 -2.8137 3.3358 18 1 6.9195 -3.0241 2.5705 19 6 6.2061 -3.5186 4.5206 20 7 5.3139 -3.2627 5.4524 21 14 7.4991 -4.8370 4.8025 22 1 8.8515 -4.2284 4.7253 23 1 7.3049 -5.4418 6.1447 24 1 7.3692 -5.8882 3.7617 25 1 -0.3633 -1.0274 -0.0232 26 1 -0.3633 0.4937 0.9014 27 1 -0.3633 0.5338 -0.8781 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 0.0949 2.2602 -0.3101 31 1 0.8952 4.5854 -0.3017 32 1 3.2825 5.0732 0.0063 33 1 6.6525 4.7029 0.5938 34 1 4.8922 0.3875 -0.3759 35 1 5.2485 -1.8987 0.9623 36 1 6.3370 -0.6801 1.6681 37 1 5.2399 -0.9778 3.8722 38 1 4.1517 -2.1963 3.1658 39 1 5.3270 -3.7588 6.2858 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605826728.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:09 Heat of formation + Delta-G solvation = -111.556952 kcal Electronic energy + Delta-G solvation = -23113.846901 eV Core-core repulsion = 19600.020374 eV Total energy + Delta-G solvation = -3513.826528 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.95328 -39.55669 -38.35080 -36.17044 -34.46995 -34.31219 -33.42092 -31.14163 -30.27179 -29.02931 -25.80022 -25.07291 -23.83370 -22.38353 -21.04334 -20.58835 -19.71368 -17.99260 -17.64856 -16.96060 -16.67192 -15.85906 -15.75641 -15.41256 -15.10626 -14.68436 -14.43072 -14.33059 -14.16430 -13.54983 -13.21579 -12.62506 -12.51365 -12.27361 -12.14279 -12.05159 -11.64104 -11.54824 -11.25708 -11.13442 -11.04852 -10.87937 -10.68197 -10.59694 -9.91306 -9.65404 -9.43591 -9.19167 -9.05632 -8.98595 -8.54098 -8.28885 -5.93276 -3.97437 0.53929 1.13707 2.47706 2.89787 3.16747 3.36823 3.40229 3.41812 3.45410 3.64285 4.50033 4.55721 4.71439 4.82028 5.05145 5.14234 5.22103 5.23806 5.41613 5.42215 5.47078 5.67864 5.78168 5.89079 5.98820 6.09021 6.15349 6.23300 6.25821 6.32974 6.37015 6.42080 6.50981 6.92017 6.98478 7.76175 7.78926 7.81774 7.88770 8.09519 8.41429 8.74121 9.10505 9.65818 11.17686 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.017910 B = 0.004183 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.961495 B = 6692.302604 C = 7834.127769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 C -0.080 4.080 4 C -0.081 4.081 5 C -0.136 4.136 6 C -0.064 4.064 7 C -0.136 4.136 8 C 0.524 3.476 9 O -0.498 6.498 10 O -0.516 6.516 11 C 0.213 3.787 12 N -0.689 5.689 13 C 0.520 3.480 14 O -0.523 6.523 15 C -0.127 4.127 16 C 0.039 3.961 17 C -0.526 4.526 18 H 0.056 0.944 19 C 0.059 3.941 20 N -0.891 5.891 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.136 0.864 31 H 0.131 0.869 32 H 0.138 0.862 33 H 0.413 0.587 34 H 0.412 0.588 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.108 15.269 -16.078 23.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.128 4.128 3 C -0.081 4.081 4 C -0.100 4.100 5 C -0.154 4.154 6 C -0.082 4.082 7 C -0.139 4.139 8 C 0.368 3.632 9 O -0.386 6.386 10 O -0.328 6.328 11 C 0.120 3.880 12 N -0.342 5.342 13 C 0.311 3.689 14 O -0.397 6.397 15 C -0.167 4.167 16 C 0.001 3.999 17 C -0.565 4.565 18 H 0.074 0.926 19 C -0.143 4.143 20 N -0.529 5.529 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.111 0.889 30 H 0.154 0.846 31 H 0.149 0.851 32 H 0.156 0.844 33 H 0.272 0.728 34 H 0.250 0.750 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.041 0.959 38 H 0.042 0.958 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.918 15.021 -15.259 22.829 hybrid contribution 1.721 -0.572 -0.003 1.813 sum -6.198 14.449 -15.261 21.911 Atomic orbital electron populations 1.21829 0.95104 1.02182 1.01646 1.20574 0.96237 0.92208 1.03771 1.20127 0.91832 0.96942 0.99227 1.21376 1.00132 0.91870 0.96580 1.21126 0.95424 0.96877 1.01950 1.21303 0.92705 0.98546 0.95669 1.19300 0.90337 0.93758 1.10529 1.20715 0.89280 0.80222 0.72980 1.90925 1.56037 1.45919 1.45707 1.84538 1.33314 1.29832 1.85137 1.17374 0.89519 0.86090 0.95055 1.43604 1.38997 1.32731 1.18831 1.21700 0.85691 0.81881 0.79676 1.90683 1.39405 1.66650 1.42948 1.21873 0.96189 0.94880 1.03749 1.18895 0.97477 0.95234 0.88296 1.21183 1.14530 1.19299 1.01458 0.92619 1.25013 0.95894 0.97304 0.96097 1.69989 1.34885 1.41297 1.06743 0.86650 0.82052 0.81957 0.77265 1.20259 1.21298 1.20237 0.92134 0.92206 0.92621 0.90604 0.88882 0.84585 0.85061 0.84399 0.72808 0.75021 0.90118 0.89690 0.95895 0.95821 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.62 37.16 0.32 -1.23 16 2 C -0.09 -1.19 5.62 -27.88 -0.16 -1.35 16 3 C -0.08 -1.06 5.60 -104.48 -0.59 -1.64 16 4 C -0.08 -0.86 9.02 -39.54 -0.36 -1.21 16 5 C -0.14 -1.28 10.02 -39.63 -0.40 -1.67 16 6 C -0.06 -0.68 9.61 -39.19 -0.38 -1.06 16 7 C -0.14 -1.86 5.89 -104.83 -0.62 -2.47 16 8 C 0.52 7.23 8.25 34.45 0.28 7.51 16 9 O -0.50 -8.18 15.60 -19.28 -0.30 -8.48 16 10 O -0.52 -5.19 12.69 -40.65 -0.52 -5.71 16 11 C 0.21 3.19 5.44 -83.48 -0.45 2.73 16 12 N -0.69 -11.04 2.98 -9.68 -0.03 -11.06 16 13 C 0.52 10.52 6.78 -10.99 -0.07 10.45 16 14 O -0.52 -12.48 14.38 5.56 0.08 -12.40 16 15 C -0.13 -2.72 5.64 -27.88 -0.16 -2.87 16 16 C 0.04 1.06 4.26 -27.88 -0.12 0.94 16 17 C -0.53 -15.23 9.11 -34.44 -0.31 -15.54 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -27.77 13.29 55.43 0.74 -27.03 16 21 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.64 7.96 -51.93 -0.41 0.22 16 27 H 0.05 0.45 7.03 -51.93 -0.37 0.09 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.09 1.56 5.81 -51.93 -0.30 1.26 16 30 H 0.14 1.11 5.88 -52.49 -0.31 0.80 16 31 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 32 H 0.14 1.18 7.62 -52.49 -0.40 0.78 16 33 H 0.41 2.41 9.11 45.56 0.42 2.82 16 34 H 0.41 5.67 8.44 -40.82 -0.34 5.33 16 35 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 36 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 333.85 15.07 5.03 5.03 Total: -1.00 -36.49 333.85 -7.33 -43.82 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -4.21 Total: 4.65 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -3.10 Total: -5.79 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.71 Total: -38.09 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.74 Total: -26.59 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -36.49 -7.33 -43.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605826728.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.733 kcal (2) G-P(sol) polarization free energy of solvation -36.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds