Wall clock time and date at job start Tue Mar 31 2020 06:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50705 * 109.47070 * 2 1 4 4 C 1.38062 * 119.96050 * 351.63666 * 3 2 1 5 5 C 1.38535 * 120.41660 * 179.70333 * 4 3 2 6 6 C 1.37819 * 120.33448 * 0.27719 * 5 4 3 7 7 C 1.39705 * 119.91792 * 359.97438 * 6 5 4 8 8 C 1.47384 * 120.20561 * 180.02562 * 7 6 5 9 9 O 1.21520 * 120.00124 * 185.32974 * 8 7 6 10 10 O 1.34757 * 120.00155 * 5.33441 * 8 7 6 11 11 C 1.38803 * 119.96095 * 171.88640 * 3 2 1 12 12 N 1.39257 * 120.16979 * 0.02562 * 11 3 2 13 13 C 1.34772 * 119.99874 * 287.62058 * 12 11 3 14 14 O 1.21280 * 120.00259 * 5.00193 * 13 12 11 15 15 C 1.50701 * 120.00136 * 185.00081 * 13 12 11 16 16 C 1.52996 * 109.47516 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.47516 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99839 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00065 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00170 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00053 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46890 * 59.99909 * 21 19 17 23 23 H 1.48493 * 109.46976 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46808 * 300.00052 * 21 19 17 25 25 H 1.09000 * 109.46891 * 178.70524 * 1 2 3 26 26 H 1.09004 * 109.47073 * 298.71005 * 1 2 3 27 27 H 1.08997 * 109.46981 * 58.70443 * 1 2 3 28 28 H 1.08997 * 109.47080 * 239.99827 * 2 1 3 29 29 H 1.09004 * 109.46616 * 119.99820 * 2 1 3 30 30 H 1.08000 * 119.79474 * 359.97335 * 4 3 2 31 31 H 1.07996 * 119.83392 * 180.28798 * 5 4 3 32 32 H 1.08002 * 120.03771 * 180.02562 * 6 5 4 33 33 H 0.96700 * 117.00347 * 179.97438 * 10 8 7 34 34 H 0.97003 * 120.00054 * 107.62825 * 12 11 3 35 35 H 1.08999 * 109.47296 * 300.00616 * 15 13 12 36 36 H 1.08996 * 109.47195 * 60.00237 * 15 13 12 37 37 H 1.08999 * 109.47194 * 300.00499 * 16 15 13 38 38 H 1.09002 * 109.47279 * 59.99929 * 16 15 13 39 39 H 0.96998 * 120.00368 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 1.1465 2.4654 -0.1740 5 6 1.5971 3.7754 -0.1695 6 6 2.9365 4.0501 0.0032 7 6 3.8459 3.0037 0.1752 8 6 5.2797 3.2903 0.3610 9 8 6.0800 2.3774 0.4132 10 8 5.7031 4.5647 0.4729 11 6 3.3859 1.6776 0.1697 12 7 4.2819 0.6252 0.3396 13 6 4.3012 -0.0630 1.4982 14 8 3.4790 0.1736 2.3579 15 6 5.3443 -1.1266 1.7257 16 6 5.1444 -1.7497 3.1086 17 6 6.1871 -2.8137 3.3358 18 1 6.9195 -3.0241 2.5705 19 6 6.2061 -3.5186 4.5206 20 7 5.3139 -3.2627 5.4524 21 14 7.4991 -4.8370 4.8025 22 1 8.8515 -4.2284 4.7253 23 1 7.3049 -5.4418 6.1447 24 1 7.3692 -5.8882 3.7617 25 1 -0.3633 -1.0274 -0.0232 26 1 -0.3633 0.4937 0.9014 27 1 -0.3633 0.5338 -0.8781 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 0.0949 2.2602 -0.3101 31 1 0.8952 4.5854 -0.3017 32 1 3.2825 5.0732 0.0063 33 1 6.6525 4.7029 0.5938 34 1 4.8922 0.3875 -0.3759 35 1 5.2485 -1.8987 0.9623 36 1 6.3370 -0.6801 1.6681 37 1 5.2399 -0.9778 3.8722 38 1 4.1517 -2.1963 3.1658 39 1 5.3270 -3.7588 6.2858 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605826728.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:08 Heat of formation + Delta-G solvation = -136.578896 kcal Electronic energy + Delta-G solvation = -23114.931934 eV Core-core repulsion = 19600.020374 eV Total energy + Delta-G solvation = -3514.911561 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.06386 -40.74401 -39.57965 -37.16601 -35.79631 -35.52414 -35.27965 -33.10186 -31.34739 -30.10411 -27.75047 -26.01613 -25.00398 -23.92433 -22.38510 -21.57221 -21.26028 -18.97263 -18.91897 -18.71018 -17.74917 -17.54648 -17.01623 -16.57781 -16.49373 -15.98224 -15.93474 -15.53195 -15.23767 -14.83195 -14.45820 -14.22196 -14.17308 -13.46501 -13.35940 -13.26120 -12.93424 -12.80421 -12.60838 -12.53002 -12.46745 -12.15838 -12.02086 -11.91095 -11.76241 -11.67608 -11.35668 -10.93769 -10.59289 -10.50784 -9.96371 -9.59820 -8.19534 -6.33962 -0.42053 0.21892 1.40396 1.45370 1.49075 1.53119 1.58543 1.99909 2.16157 2.42861 2.68924 3.13047 3.63098 3.88286 3.96067 3.99850 4.22928 4.26731 4.31717 4.38703 4.47442 4.49280 4.56299 4.63014 4.93575 5.00786 5.01826 5.15584 5.18329 5.22941 5.39573 5.43476 5.46727 5.50879 5.55335 5.58816 5.81446 5.89941 6.15517 6.40069 6.82798 6.91999 7.23693 7.36031 8.92987 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.017910 B = 0.004183 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.961495 B = 6692.302604 C = 7834.127769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.096 4.096 4 C -0.076 4.076 5 C -0.121 4.121 6 C -0.058 4.058 7 C -0.157 4.157 8 C 0.524 3.476 9 O -0.536 6.536 10 O -0.502 6.502 11 C 0.173 3.827 12 N -0.668 5.668 13 C 0.524 3.476 14 O -0.569 6.569 15 C -0.117 4.117 16 C 0.048 3.952 17 C -0.547 4.547 18 H 0.073 0.927 19 C -0.004 4.004 20 N -0.936 5.936 21 Si 0.975 3.025 22 H -0.265 1.265 23 H -0.285 1.285 24 H -0.261 1.261 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.165 0.835 31 H 0.175 0.825 32 H 0.164 0.836 33 H 0.432 0.568 34 H 0.421 0.579 35 H 0.107 0.893 36 H 0.094 0.906 37 H -0.022 1.022 38 H -0.012 1.012 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.316 16.591 -18.087 25.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.129 4.129 3 C -0.098 4.098 4 C -0.095 4.095 5 C -0.138 4.138 6 C -0.076 4.076 7 C -0.160 4.160 8 C 0.369 3.631 9 O -0.428 6.428 10 O -0.316 6.316 11 C 0.080 3.920 12 N -0.318 5.318 13 C 0.315 3.685 14 O -0.447 6.447 15 C -0.157 4.157 16 C 0.010 3.990 17 C -0.584 4.584 18 H 0.091 0.909 19 C -0.202 4.202 20 N -0.576 5.576 21 Si 0.798 3.202 22 H -0.190 1.190 23 H -0.210 1.210 24 H -0.185 1.185 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.066 0.934 30 H 0.182 0.818 31 H 0.192 0.808 32 H 0.181 0.819 33 H 0.294 0.706 34 H 0.260 0.740 35 H 0.125 0.875 36 H 0.112 0.888 37 H -0.003 1.003 38 H 0.006 0.994 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.105 16.394 -17.333 25.197 hybrid contribution 1.714 -0.817 0.578 1.985 sum -6.390 15.577 -16.755 23.754 Atomic orbital electron populations 1.21811 0.92846 1.02802 1.02744 1.20523 0.98253 0.92204 1.01898 1.20289 0.91671 0.97740 1.00083 1.21761 1.01016 0.91664 0.95011 1.21636 0.95518 0.97486 0.99204 1.21670 0.92899 0.98843 0.94194 1.19482 0.90942 0.93955 1.11584 1.20886 0.89346 0.80716 0.72111 1.90900 1.56982 1.47153 1.47716 1.84485 1.35142 1.27663 1.84307 1.17694 0.90098 0.86173 0.98010 1.43150 1.38943 1.32320 1.17412 1.21307 0.84824 0.81933 0.80472 1.90653 1.41056 1.68139 1.44843 1.21619 0.97199 0.96061 1.00789 1.18642 0.95541 0.94051 0.90733 1.21651 1.14998 1.19554 1.02222 0.90892 1.26120 0.98360 1.00037 0.95637 1.70168 1.37184 1.42823 1.07421 0.85365 0.78811 0.78573 0.77451 1.18951 1.21020 1.18536 0.92013 0.92723 0.89578 0.89894 0.93416 0.81762 0.80801 0.81882 0.70631 0.73985 0.87527 0.88759 1.00313 0.99377 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.62 71.98 0.62 -2.20 16 2 C -0.09 -2.44 5.62 29.85 0.17 -2.27 16 3 C -0.10 -2.51 5.60 -19.77 -0.11 -2.62 16 4 C -0.08 -1.39 9.02 22.30 0.20 -1.19 16 5 C -0.12 -1.78 10.02 22.24 0.22 -1.56 16 6 C -0.06 -1.06 9.61 22.53 0.22 -0.84 16 7 C -0.16 -4.14 5.89 -20.00 -0.12 -4.26 16 8 C 0.52 14.19 8.25 70.23 0.58 14.77 16 9 O -0.54 -17.88 15.60 19.77 0.31 -17.57 16 10 O -0.50 -9.25 12.69 -56.68 -0.72 -9.97 16 11 C 0.17 5.21 5.44 38.62 0.21 5.42 16 12 N -0.67 -22.17 2.98 -302.93 -0.90 -23.08 16 13 C 0.52 22.44 6.78 87.66 0.59 23.03 16 14 O -0.57 -29.16 14.38 -3.03 -0.04 -29.21 16 15 C -0.12 -5.21 5.64 29.85 0.17 -5.04 16 16 C 0.05 2.80 4.26 29.85 0.13 2.93 16 17 C -0.55 -32.38 9.11 25.60 0.23 -32.15 16 18 H 0.07 3.97 7.74 -2.91 -0.02 3.95 16 19 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 20 N -0.94 -60.54 13.29 21.45 0.28 -60.26 16 21 Si 0.97 45.42 29.54 68.60 2.03 47.45 16 22 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 24 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 25 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.05 1.11 7.96 -2.38 -0.02 1.09 16 27 H 0.09 1.14 7.03 -2.39 -0.02 1.12 16 28 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.05 1.72 5.81 -2.38 -0.01 1.71 16 30 H 0.17 2.00 5.88 -2.91 -0.02 1.98 16 31 H 0.17 1.14 8.06 -2.91 -0.02 1.11 16 32 H 0.16 2.14 7.62 -2.91 -0.02 2.11 16 33 H 0.43 4.32 9.11 -74.06 -0.67 3.64 16 34 H 0.42 11.94 8.44 -92.71 -0.78 11.16 16 35 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16 36 H 0.09 4.00 8.14 -2.39 -0.02 3.99 16 37 H -0.02 -1.43 8.10 -2.39 -0.02 -1.45 16 38 H -0.01 -0.79 8.10 -2.39 -0.02 -0.81 16 39 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -84.65 333.85 4.17 -80.48 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -0.36 Total: 17.89 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 3.57 Total: -5.74 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -0.62 Total: -83.33 kcal Atomic # 8 Polarization: -56.29 SS G_CDS: -0.45 Total: -56.75 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -84.65 4.17 -80.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605826728.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.094 kcal (2) G-P(sol) polarization free energy of solvation -84.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds