Wall clock time and date at job start Tue Mar 31 2020 06:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38267 * 119.88024 * 2 1 4 4 C 1.38963 * 120.23007 * 179.97438 * 3 2 1 5 5 N 1.39959 * 119.99457 * 180.02562 * 4 3 2 6 6 C 1.34775 * 119.99970 * 144.89268 * 5 4 3 7 7 O 1.21289 * 119.99581 * 4.61816 * 6 5 4 8 8 C 1.50694 * 120.00011 * 184.61971 * 6 5 4 9 9 C 1.52998 * 109.47020 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.46979 * 180.02562 * 9 8 6 11 11 C 1.50705 * 109.46966 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99890 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99756 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00473 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99781 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47333 * 90.00123 * 15 13 11 17 17 H 1.48501 * 109.47355 * 210.00179 * 15 13 11 18 18 H 1.48504 * 109.47275 * 330.00129 * 15 13 11 19 19 C 1.38625 * 120.00795 * 0.02562 * 4 3 2 20 20 C 1.39509 * 119.77100 * 0.02562 * 19 4 3 21 21 C 1.47739 * 120.11687 * 179.97438 * 20 19 4 22 22 O 1.21465 * 120.00341 * 180.02562 * 21 20 19 23 23 O 1.34715 * 119.99899 * 0.02562 * 21 20 19 24 24 C 1.37961 * 119.89211 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.47477 * 90.00262 * 1 2 3 26 26 H 1.09003 * 109.46561 * 209.99849 * 1 2 3 27 27 H 1.08995 * 109.47473 * 329.99749 * 1 2 3 28 28 H 1.07992 * 119.88860 * 359.97438 * 3 2 1 29 29 H 0.97001 * 119.99986 * 324.89024 * 5 4 3 30 30 H 1.09002 * 109.47433 * 299.99952 * 8 6 5 31 31 H 1.09003 * 109.46913 * 60.00329 * 8 6 5 32 32 H 1.09001 * 109.47746 * 300.00146 * 9 8 6 33 33 H 1.08996 * 109.47308 * 60.00666 * 9 8 6 34 34 H 1.08996 * 109.47152 * 299.99838 * 10 9 8 35 35 H 1.08995 * 109.47160 * 60.00352 * 10 9 8 36 36 H 0.97003 * 120.00379 * 179.97438 * 14 13 11 37 37 H 1.07998 * 120.11160 * 179.74870 * 19 4 3 38 38 H 0.96697 * 117.00260 * 180.02562 * 23 21 20 39 39 H 1.08008 * 120.00201 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1989 0.0000 4 6 3.5854 1.2074 0.0005 5 7 4.2777 2.4237 0.0011 6 6 5.4406 2.5370 0.6728 7 8 5.9297 1.5639 1.2067 8 6 6.1331 3.8725 0.7606 9 6 7.4216 3.7264 1.5725 10 6 8.1244 5.0826 1.6622 11 6 9.3939 4.9385 2.4614 12 1 9.6715 3.9761 2.8653 13 6 10.2010 6.0354 2.6768 14 7 9.8633 7.2072 2.1846 15 14 11.7750 5.8568 3.6669 16 1 12.8979 5.5208 2.7550 17 1 12.0689 7.1345 4.3642 18 1 11.6095 4.7730 4.6685 19 6 4.2860 0.0112 0.0005 20 6 3.5912 -1.1986 -0.0005 21 6 4.3301 -2.4779 -0.0011 22 8 3.7231 -3.5300 -0.0025 23 8 5.6773 -2.4776 -0.0001 24 6 2.1945 -1.1961 0.0005 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6521 2.1319 -0.0004 29 1 3.9205 3.1853 -0.4820 30 1 6.3734 4.2239 -0.2429 31 1 5.4755 4.5913 1.2496 32 1 7.1811 3.3753 2.5760 33 1 8.0794 3.0076 1.0840 34 1 8.3650 5.4341 0.6589 35 1 7.4665 5.8011 2.1509 36 1 10.4309 7.9790 2.3365 37 1 5.3660 0.0158 -0.0031 38 1 6.1165 -3.3390 -0.0009 39 1 1.6527 -2.1305 0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607677411.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:03 Heat of formation + Delta-G solvation = -123.135133 kcal Electronic energy + Delta-G solvation = -21882.545718 eV Core-core repulsion = 18368.217123 eV Total energy + Delta-G solvation = -3514.328595 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.93085 -40.08402 -38.63457 -36.27545 -35.10250 -34.26463 -33.00455 -32.11484 -30.35458 -27.88307 -27.22865 -25.06977 -24.23155 -22.27643 -21.24051 -20.38859 -19.89850 -18.28132 -17.81429 -16.85717 -16.51001 -16.13915 -15.95956 -15.85624 -15.69526 -15.02333 -14.45440 -14.09816 -13.93960 -13.62051 -13.49343 -13.23512 -12.58646 -12.42934 -12.33803 -12.03471 -11.96510 -11.83564 -11.73404 -11.44207 -10.90239 -10.83798 -10.68008 -10.56303 -10.46546 -9.79722 -9.72733 -9.35051 -9.13930 -9.05842 -8.37680 -8.34654 -6.00448 -4.02008 0.41317 1.03253 2.24222 2.70192 2.78562 2.98503 3.33303 3.39318 3.44056 3.51347 4.40245 4.47092 4.64072 4.77759 4.85168 4.92236 5.05922 5.12552 5.27473 5.35873 5.38846 5.48249 5.57563 5.59249 5.69857 5.91245 6.07723 6.12320 6.15667 6.18335 6.28622 6.64867 6.70050 6.85245 7.09898 7.28755 7.66794 7.69481 7.78759 7.99692 8.16393 8.43317 9.05022 9.62287 11.11038 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.022362 B = 0.002817 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.819617 B = 9936.167937 C =10997.781809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.081 4.081 3 C -0.113 4.113 4 C 0.144 3.856 5 N -0.683 5.683 6 C 0.512 3.488 7 O -0.513 6.513 8 C -0.136 4.136 9 C -0.096 4.096 10 C 0.021 3.979 11 C -0.519 4.519 12 H 0.056 0.944 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.892 3.108 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.273 1.273 19 C -0.070 4.070 20 C -0.110 4.110 21 C 0.532 3.468 22 O -0.519 6.519 23 O -0.504 6.504 24 C -0.076 4.076 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.133 0.867 29 H 0.413 0.587 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.260 0.740 37 H 0.157 0.843 38 H 0.414 0.586 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.007 -13.209 -8.134 24.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.082 4.082 3 C -0.133 4.133 4 C 0.049 3.951 5 N -0.329 5.329 6 C 0.301 3.699 7 O -0.387 6.387 8 C -0.176 4.176 9 C -0.134 4.134 10 C -0.016 4.016 11 C -0.557 4.557 12 H 0.075 0.925 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.090 4.090 20 C -0.111 4.111 21 C 0.376 3.624 22 O -0.409 6.409 23 O -0.315 6.315 24 C -0.095 4.095 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.151 0.849 29 H 0.249 0.751 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.035 0.965 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.175 0.825 38 H 0.273 0.727 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.874 -13.559 -7.713 24.486 hybrid contribution 1.011 -0.107 0.290 1.057 sum -17.864 -13.665 -7.423 23.684 Atomic orbital electron populations 1.20783 0.90125 1.03256 1.02686 1.19585 0.96441 0.91847 1.00303 1.21092 0.92150 0.98701 1.01406 1.17690 0.90793 0.86272 1.00336 1.43813 1.24127 1.12079 1.52883 1.21596 0.79393 0.92581 0.76297 1.90701 1.63615 1.39732 1.44608 1.21887 0.99698 0.92182 1.03854 1.21481 0.92442 1.01181 0.98337 1.19128 0.94919 0.90454 0.97141 1.21263 1.06335 0.95030 1.33085 0.92548 1.25015 0.98128 0.95337 0.96000 1.69956 1.38270 0.99722 1.45788 0.86592 0.83660 0.77437 0.80326 1.20655 1.21252 1.19819 1.21686 1.02236 0.89638 0.95479 1.18889 0.93102 0.90439 1.08709 1.20841 0.80565 0.89230 0.71718 1.90867 1.69641 1.33605 1.46793 1.84637 1.20767 1.40772 1.85354 1.21061 0.91920 0.98655 0.97838 0.90819 0.91126 0.91157 0.84899 0.75092 0.88851 0.88858 0.92552 0.92506 0.96547 0.96559 0.93034 0.82509 0.72713 0.84520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.00 36.00 0.36 -0.28 16 2 C -0.08 -0.71 5.87 -104.71 -0.61 -1.32 16 3 C -0.11 -1.02 9.61 -39.30 -0.38 -1.39 16 4 C 0.14 1.66 6.29 -83.73 -0.53 1.13 16 5 N -0.68 -7.44 5.34 -9.89 -0.05 -7.50 16 6 C 0.51 7.54 7.67 -10.99 -0.08 7.45 16 7 O -0.51 -9.48 13.42 5.55 0.07 -9.41 16 8 C -0.14 -2.05 5.70 -27.89 -0.16 -2.21 16 9 C -0.10 -1.98 4.44 -26.73 -0.12 -2.10 16 10 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 11 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 12 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 15 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 C -0.07 -0.92 8.26 -38.96 -0.32 -1.25 16 20 C -0.11 -1.35 5.87 -105.01 -0.62 -1.96 16 21 C 0.53 6.65 8.27 34.61 0.29 6.94 16 22 O -0.52 -7.34 17.13 -19.24 -0.33 -7.67 16 23 O -0.50 -5.40 12.68 -40.53 -0.51 -5.92 16 24 C -0.08 -0.79 9.24 -39.15 -0.36 -1.15 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 27 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 28 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 29 H 0.41 3.00 8.82 -40.82 -0.36 2.64 16 30 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 33 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.16 2.39 5.78 -52.49 -0.30 2.08 16 38 H 0.41 2.37 9.11 45.56 0.42 2.79 16 39 H 0.14 1.30 7.65 -52.48 -0.40 0.90 16 LS Contribution 342.02 15.07 5.15 5.15 Total: -1.00 -35.50 342.02 -7.44 -42.95 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -4.41 Total: 0.96 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -3.08 Total: -9.34 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.68 Total: -33.52 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.77 Total: -22.99 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.50 -7.44 -42.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607677411.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.186 kcal (2) G-P(sol) polarization free energy of solvation -35.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds